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Aquino T, Dentz M. Kinetics of contact processes under segregation. Phys Rev E 2020; 101:012114. [PMID: 32069546 DOI: 10.1103/physreve.101.012114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2019] [Indexed: 06/10/2023]
Abstract
The kinetics of contact processes are determined by the interplay among local mass transfer mechanisms, spatial heterogeneity, and segregation. Determining the macroscopic behavior of a wide variety of phenomena across the disciplines requires linking reaction times to the statistical properties of spatially fluctuating quantities. We formulate the dynamics of advected agents interacting with segregated immobile components in terms of a chemical continuous-time random walk. The inter-reaction times result from the first-passage times of mobile species to and across reactive regions, and available immobile reactants undergo a restart procedure. Segregation leads to memory effects and enhances the role of concentration fluctuations in the large-scale dynamics.
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Affiliation(s)
- Tomás Aquino
- Spanish National Research Council (IDAEA-CSIC), 08034 Barcelona, Spain
- Geosciences Rennes, UMR 6118, CNRS, Université de Rennes 1, Rennes, France
| | - Marco Dentz
- Spanish National Research Council (IDAEA-CSIC), 08034 Barcelona, Spain
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Aquino T, Lapeyre GJ, Dentz M. Survival and confinement under quenched disorder. Phys Chem Chem Phys 2019; 21:23598-23610. [PMID: 31621720 DOI: 10.1039/c9cp03792f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We study the survival and confinement of random walkers under quenched disorder characterized by spatially-varying waiting times and decay rates. Spatial heterogeneity and segregation lead to a dynamic coupling between transport and reaction, resulting in history-dependent dynamics exhibiting long survivals and confinement. The survival probability decays as a power law, in contrast to the classical exponential law for decay at a homogeneous rate. The mean squared displacement shows dimension-dependent subdiffusive growth followed by localization, with stronger confinement in higher dimensions.
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Affiliation(s)
- Tomás Aquino
- Spanish National Research Council (IDAEA-CSIC), 08034 Barcelona, Spain.
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Ostvar S, Wood BD. A non-scale-invariant form for coarse-grained diffusion-reaction equations. J Chem Phys 2016. [DOI: 10.1063/1.4962421] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Sassan Ostvar
- School of Chemical, Biological and Environmental Engineering, Oregon State University, Corvallis, Oregon 97331, USA
| | - Brian D. Wood
- School of Chemical, Biological and Environmental Engineering, Oregon State University, Corvallis, Oregon 97331, USA
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Lazaridis F, Savara A, Argyrakis P. Reaction efficiency effects on binary chemical reactions. J Chem Phys 2014; 141:104103. [PMID: 25217900 DOI: 10.1063/1.4894791] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We study the effect of the variation of reaction efficiency in binary reactions. We use the well-known A + B → 0 model, which has been extensively studied in the past. We perform simulations on this model where we vary the efficiency of reaction, i.e., when two particles meet they do not instantly react, as has been assumed in previous studies, but they react with a probability γ, where γ is in the range 0 < γ < 1. Our results show that at small γ values the system is reaction limited, but as γ increases it crosses over to a diffusion limited behavior. At early times, for small γ values, the particle density falls slower than for larger γ values. This fall-off goes over a crossover point, around the value of γ = 0.50 for high initial densities. Under a variety of conditions simulated, we find that the crossover point was dependent on the initial concentration but not on the lattice size. For intermediate and long times simulations, all γ values (in the depleted reciprocal density versus time plot) converge to the same behavior. These theoretical results are useful in models of epidemic reactions and epidemic spreading, where a contagion from one neighbor to the next is not always successful but proceeds with a certain probability, an analogous effect with the reaction probability examined in the current work.
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Affiliation(s)
- Filippos Lazaridis
- Department of Physics, University of Thessaloniki, Thessaloniki 54124, Greece
| | - Aditya Savara
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - Panos Argyrakis
- Department of Physics, University of Thessaloniki, Thessaloniki 54124, Greece
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Al-Ghoul M, Ghaddar T, Moukalled T. Pulse-Front Propagation and Interaction During the Growth of CdS Nanoparticles in a Gel. J Phys Chem B 2009; 113:11594-603. [DOI: 10.1021/jp9022647] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mazen Al-Ghoul
- Department of Chemistry, and Center for Advanced Mathematical Sciences, American University of Beirut, Beirut, Lebanon
| | - Tarek Ghaddar
- Department of Chemistry, and Center for Advanced Mathematical Sciences, American University of Beirut, Beirut, Lebanon
| | - Tharwat Moukalled
- Department of Chemistry, and Center for Advanced Mathematical Sciences, American University of Beirut, Beirut, Lebanon
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Makki R, Al-Ghoul M, Sultan R. Propagating Fronts in Thin Tubes: Concentration, Electric, and pH Effects in a Two-Dimensional Precipitation Pulse System. J Phys Chem A 2009; 113:6049-57. [DOI: 10.1021/jp8087226] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Rabih Makki
- Department of Chemistry and Center for Advanced Mathematical Sciences, American University of Beirut, P.O. Box 11-0236, 1107 2020 Riad El Solh, Beirut, Lebanon
| | - Mazen Al-Ghoul
- Department of Chemistry and Center for Advanced Mathematical Sciences, American University of Beirut, P.O. Box 11-0236, 1107 2020 Riad El Solh, Beirut, Lebanon
| | - Rabih Sultan
- Department of Chemistry and Center for Advanced Mathematical Sciences, American University of Beirut, P.O. Box 11-0236, 1107 2020 Riad El Solh, Beirut, Lebanon
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Sheu WS, Wang SC. Effects of velocity relaxation on the anomalous kinetics of a one-dimensional A+A-->Ø reaction. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 78:046101. [PMID: 18999487 DOI: 10.1103/physreve.78.046101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2008] [Revised: 08/07/2008] [Indexed: 05/27/2023]
Abstract
A one-dimensional A+A-->slashed circle reaction with alternating dichotomic velocities is investigated to study the effects of velocity relaxation on the anomalous kinetics of this reaction. While we keep the magnitudes constant, the particle velocities are allowed to change from one moving direction to the other with a relaxation time, beta. The kinetics of the reaction is studied for various relaxation times. Although the anomalous slower reaction rate is anticipated for the reaction in one-dimension, compared to the classical rate law, the rate is found to speed up at intermediate times for intermediate values of beta . The time evolution for the spatial distribution of particles is also discussed to elucidate the effects of the velocity relaxation times on the kinetics of the reaction.
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Affiliation(s)
- Wen-Shyan Sheu
- Department of Chemistry, Fu-Jen Catholic University, Hsin-Chuang, Taipei 242, Taiwan, Republic of China
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Romero AH, Lacasta AM, Sancho JM, Lindenberg K. Numerical study of A+A→0 and A+B→0 reactions with inertia. J Chem Phys 2007; 127:174506. [DOI: 10.1063/1.2779327] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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9
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Abad E. On-lattice coalescence and annihilation of immobile reactants in loopless lattices and beyond. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2004; 70:031110. [PMID: 15524509 DOI: 10.1103/physreve.70.031110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2003] [Revised: 06/03/2004] [Indexed: 05/24/2023]
Abstract
We study the behavior of the chemical reactions A+A-->A+S and A+A-->S+S (where the reactive species A and the inert species S are both assumed to be immobile) embedded on Bethe lattices of arbitrary coordination number z and on a two-dimensional (2D) square lattice. For the Bethe lattice case, exact solutions for the coverage in the A species in terms of the initial condition are obtained. In particular, our results hold for the important case of an infinite one-dimensional (1D) lattice (z=2). The method is based on an expansion in terms of conditional probabilities which exploits a Markovian property of these systems. Along the same lines, an approximate solution for the case of a 2D square lattice is developed. The effect of dilution in a random initial condition is discussed in detail, both for the lattice coverage and for the spatial distribution of reactants.
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Affiliation(s)
- E Abad
- Centre for Nonlinear Phenomena and Complex Systems, Université Libre de Bruxelles, CP 231, 1050 Bruxelles, Belgium.
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Lee JW. Dimensional crossover of diffusion-limited reaction in a quasi-one-dimensional lattice. J Chem Phys 2000. [DOI: 10.1063/1.1321037] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Lee JW. Finite-size effects of two-particle diffusion-limited reactions. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 2000; 62:2959-62. [PMID: 11088782 DOI: 10.1103/physreve.62.2959] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2000] [Indexed: 11/07/2022]
Abstract
We have studied the finite-size effects of two-particle diffusion-limited reaction A+B-->0, on a one-dimensional lattice using the Monte Carlo method. The density at a finite lattice follows a power law, C(t) approximately t(-x) below the crossover time, and shows an exponential decay above the crossover time. The crossover time depends on the lattice size and the bias field. We found second-order correction terms of the density decay as C(t) approximately t(-1/4)[1+O(t(-1/8))] for the isotropic diffusion of particles and C(t) approximately t(-1/3)[1+O(t(-1/24))] for the maximum drift. We proposed the scaling function of the density given as C(t) approximately L(-1/2)f(o)(t/L(2))+L(-3/4)f(1)(t/L(2)) for the isotropic diffusion and C(t) approximately L(-1/2)f(o)(t/L(3/2))+L(-9/16)f(1)(t/L(3/2)) for the maximum drift where f(o) and f(1) are scaling functions.
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Affiliation(s)
- JW Lee
- Department of Physics, Inha University, Inchon 402-751, Korea
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Reigada R, Lindenberg K. Dimensional Crossovers in A + B → 0 Reaction in Tubular Geometries. J Phys Chem A 1999. [DOI: 10.1021/jp9914018] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ramon Reigada
- Department of Chemistry and Biochemistry 0340, University of CaliforniaSan Diego, La Jolla, California 92093-0340
| | - Katja Lindenberg
- Department of Chemistry and Biochemistry 0340 and Institute for Nonlinear Science, University of CaliforniaSan Diego, La Jolla, California 92093-0340
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Lacasta AM, Sagués F, Sokolov IM, Sancho JM. Study of a bimolecular annihilation process for coarsening reactants. J Chem Phys 1999. [DOI: 10.1063/1.478548] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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15
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Zhao X, Yen A, Kopelman R. Monte Carlo Simulation of Surface Adsorption−Diffusion−Reaction Kinetics. J Phys Chem B 1999. [DOI: 10.1021/jp983659o] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xiaolin Zhao
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109
| | - Andrew Yen
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109
| | - Raoul Kopelman
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109
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Sheu WS, Chen HY. Particle distribution of a one-dimensional imperfect annihilation reaction in the gas phase. J Chem Phys 1998. [DOI: 10.1063/1.476266] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Zhao X, Yen A, Kopelman R. Anomalous Etching Kinetics of Self-Assembled Monolayers on Silica−Water Interfaces: Experiment and Modeling. J Phys Chem B 1997. [DOI: 10.1021/jp972633e] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xiaolin Zhao
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109
| | - Andrew Yen
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109
| | - Raoul Kopelman
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109
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Reigada R, Sagués F, Sokolov IM, Sancho JM, Blumen A. Spatial organization in the A+B→0 reaction under confined-scale mixing. J Chem Phys 1997. [DOI: 10.1063/1.474470] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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20
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Yen A, Lin AL, Koo YEL, Vilensky B, Taitelbaum H, Kopelman R. Spatiotemporal Patterns and Nonclassical Kinetics of Competing Elementary Reactions: Chromium Complex Formation with Xylenol Orange in a Capillary. J Phys Chem A 1997. [DOI: 10.1021/jp962994e] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Andrew Yen
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, and Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Anna L. Lin
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, and Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Yong-Eun Lee Koo
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, and Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Baruch Vilensky
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, and Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Haim Taitelbaum
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, and Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Raoul Kopelman
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, and Department of Physics, Bar-Ilan University, Ramat-Gan 52900, Israel
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