1
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Giricz A, Czakó G, Papp D. Alternating Stereospecificity upon Central-Atom Change: Dynamics of the F - +PH 2 Cl S N 2 Reaction Compared to its C- and N-Centered Analogues. Chemistry 2023; 29:e202302113. [PMID: 37698297 DOI: 10.1002/chem.202302113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Indexed: 09/13/2023]
Abstract
Central-atom effects on bimolecular nucleophilic substitution (SN 2) reactions are well-known in chemistry, however, the atomic-level SN 2 dynamics at phosphorous (P) centers has never been studied. We investigate the dynamics of the F- +PH2 Cl reaction with the quasi-classical trajectory method on a novel full-dimensional analytical potential energy surface fitted on high-level ab initio data. Our computations reveal intermediate dynamics compared to the F- +CH3 Cl and the F- +NH2 Cl SN 2 reactions: phosphorus as central atom leads to a more indirect SN 2 reaction with extensive complex-formation with respect to the carbon-centered one, however, the title reaction is more direct than its N-centered pair. Stereospecificity, characteristic at C-center, does not appear here either, due to the submerged front-side-attack retention path and the repeated entrance-channel inversional motion, whereas the multi-inversion mechanism discovered at nitrogen center is also undermined by the deep Walden-well. At low collision energies, 6 % of the PH2 F products form with retained configuration, mostly through complex-mediated mechanisms, while this ratio reaches 24 % at the highest energy due to the increasing dominance of the direct front-side mechanism and the smaller chance for hitting the deep Walden-inversion minimum. Our results suggest pronounced central-atom effects in SN 2 reactions, which can fundamentally change their (stereo)dynamics.
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Affiliation(s)
- Anett Giricz
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged, H-6720, Hungary
| | - Gábor Czakó
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged, H-6720, Hungary
| | - Dóra Papp
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged, H-6720, Hungary
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2
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Münst MG, Barwa E, Beyer MK. Energy release and product ion fragmentation in proton transfer reactions of N 2H + and ArH + with acetone*. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2155259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Maximilian G. Münst
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck Innsbruck, Austria
| | - Erik Barwa
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck Innsbruck, Austria
| | - Martin K. Beyer
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck Innsbruck, Austria
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3
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Viggiano AA, Ard SG, Shuman NS. Temperature and energy dependences of ion-molecule reactions: Studies inspired by Diethard Böhme. MASS SPECTROMETRY REVIEWS 2022; 41:568-592. [PMID: 34159628 DOI: 10.1002/mas.21700] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 04/27/2021] [Accepted: 04/28/2021] [Indexed: 06/13/2023]
Abstract
Diethard Böhme has had a long career covering many topics in ion-molecule reactivity. In this review, we describe the work done at the Air Force Research Laboratory (and its variously named preceding organizations) that was inspired by his studies. These fall into two main areas: nucleophilic displacement (SN 2) and metal cation chemistry. In SN 2 chemistry, we revisited many of the reactions Diethard pioneered and studied them in more detail. We found nonstatistical behavior, both competition and noncompetition between multiple channels. New channels were found as hydration occurred, with more solution-like behavior occurring as only a few ligands were added. Temperature-dependent studies revealed details that were not observable at room temperature. These and other highlights will be discussed. In metal cation reactions, Diethard's use of an inductively coupled ion source allowed him to systematically study the periodic table of elements with a number of simple neutrals. We have taken the most interesting of these and studied them in greater detail. In doing so, we were able to identify curve crossing rates, in a few instances information about product states, and the importance of multiple entrance channels.
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Affiliation(s)
- Albert A Viggiano
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland Air Force Base, Albuquerque, New Mexico, USA
| | - Shaun G Ard
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland Air Force Base, Albuquerque, New Mexico, USA
| | - Nicholas S Shuman
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland Air Force Base, Albuquerque, New Mexico, USA
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4
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Fujioka K, Weitzel KM, Sun R. The Potential Energy Profile of the HBr + + HCl Bimolecular Collision. J Phys Chem A 2022; 126:1465-1474. [PMID: 35196015 DOI: 10.1021/acs.jpca.1c08300] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Recently, the HBr+ + HCl bimolecular reaction has been exploited by guided ion beam studies to probe the effect of rotational excitations and collision energies on the dynamics of the ion-molecule reactions. The current manuscript employs high-level ab initio calculations and reports the potential energy of pathways leading to various products, including HBr + HCl+, H2Cl+ + Br, H2Br+ + Cl, and H2 + BrCl+. The study shows that the intermediates involved in this reaction are connected by low-lying transition states, thus frequent isomerizations and diverse products are expected. Further, this manuscript screens the performance of 192 different combinations of computationally efficient methods and basis sets in order to identify the optimal quantum chemical method for further dynamics simulations.
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Affiliation(s)
- Kazuumi Fujioka
- Department of Chemistry, University of Hawai'i at Ma̅noa, Honolulu, Hawaii 96822, United States
| | | | - Rui Sun
- Department of Chemistry, University of Hawai'i at Ma̅noa, Honolulu, Hawaii 96822, United States
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5
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Dékány AÁ, Kovács GZ, Czakó G. High-Level Systematic Ab Initio Comparison of Carbon- and Silicon-Centered S N2 Reactions. J Phys Chem A 2021; 125:9645-9657. [PMID: 34709818 PMCID: PMC8591615 DOI: 10.1021/acs.jpca.1c07574] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Abstract
![]()
We characterize the
stationary points along the Walden inversion,
front-side attack, and double-inversion pathways of the X– + CH3Y and X– + SiH3Y [X,
Y = F, Cl, Br, I] SN2 reactions using chemically accurate
CCSD(T)-F12b/aug-cc-pVnZ [n = D,
T, Q] levels of theory. At the carbon center, Walden inversion dominates
and proceeds via prereaction (X–···H3CY) and postreaction (XCH3···Y–) ion-dipole wells separated by a usually submerged
transition state (X–H3C–Y)−, front-side attack occurs over high barriers, double inversion is
the lowest-energy retention pathway for X = F, and hydrogen- (F–···HCH2Y) and halogen-bonded
(X–···YCH3) complexes
exist in the entrance channel. At the silicon center, Walden inversion
proceeds through a single minimum (X–SiH3–Y)−, the front-side attack is competitive via a usually
submerged transition state separating pre- and postreaction minima
having X–Si–Y angles close to 90°, double inversion
occurs over positive, often high barriers, and hydrogen- and halogen-bonded
complexes are not found. In addition to the SN2 channels
(Y– + CH3X/SiH3X), we report
reaction enthalpies for proton abstraction (HX + CH2Y–/SiH2Y–), hydride substitution
(H– + CH2XY/SiH2XY), XH···Y– complex formation (XH···Y– + 1CH2/1SiH2), and halogen
abstraction (XY + CH3–/SiH3– and XY– + CH3/SiH3).
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Affiliation(s)
- Attila Á Dékány
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary
| | - Gyula Z Kovács
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary
| | - Gábor Czakó
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary
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6
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Tajti V, Győri T, Czakó G. Detailed quasiclassical dynamics of the F - + CH 3Br reaction on an ab initio analytical potential energy surface. J Chem Phys 2021; 155:124301. [PMID: 34598562 DOI: 10.1063/5.0065209] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Dynamics and mechanisms of the F- + CH3Br(v = 0) → Br- + CH3F (SN2 via Walden inversion, front-side attack, and double inversion), F- + inverted-CH3Br (induced inversion), HF + CH2Br- (proton abstraction), and FH⋯Br- + 1CH2 reactions are investigated using a high-level global ab initio potential energy surface, the quasiclassical trajectory method, as well as non-standard configuration- and mode-specific analysis techniques. A vector-projection method is used to identify inversion and retention trajectories; then, a transition-state-attack-angle-based approach unambiguously separates the front-side attack and the double-inversion retention pathways. The Walden-inversion SN2 channel becomes direct rebound dominated with increasing collision energy as indicated by backward scattering, initial back-side attack preference, and the redshifting of product internal energy peaks in accord with CF stretching populations. In the minor retention and induced-inversion pathways, almost the entire available energy transfers into product rotation-vibration, and retention mainly proceeds with indirect, slow double inversion following induced inversion with about 50% probability. Proton abstraction is dominated by direct stripping (evidenced by forward scattering) with CH3-side initial attack preference, providing mainly vibrationally ground state products with significant zero-point energy violation.
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Affiliation(s)
- Viktor Tajti
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary
| | - Tibor Győri
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary
| | - Gábor Czakó
- MTA-SZTE Lendület Computational Reaction Dynamics Research Group, Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary
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7
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Wester R. Fifty years of nucleophilic substitution in the gas phase. MASS SPECTROMETRY REVIEWS 2021; 41:627-644. [PMID: 34060119 PMCID: PMC9291629 DOI: 10.1002/mas.21705] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 05/05/2021] [Accepted: 05/05/2021] [Indexed: 06/12/2023]
Abstract
Bimolecular nucleophilic substitution ( S N 2 ) reactions have become a model system for the investigation of structure-reactivity relationships, stereochemistry, solvent influences, and detailed atomistic dynamics. In this review, the progress during five decades of experimental and theoretical research on gas phase S N 2 reactions is discussed. Many advancements of the employed methods have led to a tremendous increase in our understanding of the properties and the dynamics of these reactions. For reactions involving six atoms a quantitative agreement of the differential reactive scattering cross sections has already been achieved, in the future it is expected that even larger polyatomic reactions systems become tractable. Furthermore, studies with higher precision, improved reactant control, and a more accurate theoretical treatment of quantum effects are envisioned.
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Affiliation(s)
- Roland Wester
- Institut für Ionenphysik und Angewandte PhysikUniversität InnsbruckTechnikerstraße 256020 InnsbruckAustria
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8
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Ard SG, Viggiano AA, Shuman NS. Old School Techniques with Modern Capabilities: Kinetics Determination of Dynamical Information Such as Barriers, Multiple Entrance Channel Complexes, Product States, Spin Crossings, and Size Effects in Metallic Ion–Molecule Reactions. J Phys Chem A 2021; 125:3503-3527. [DOI: 10.1021/acs.jpca.0c11395] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Shaun G. Ard
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland Air Force Base, Albuquerque, New Mexico 87117, United States
| | - Albert A. Viggiano
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland Air Force Base, Albuquerque, New Mexico 87117, United States
| | - Nicholas S. Shuman
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland Air Force Base, Albuquerque, New Mexico 87117, United States
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9
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Zhang GD, Guan LC, Yan ZF, Cheng M, Gao H. A three-dimensional velocity-map imaging setup designed for crossed ion-molecule scattering studies. CHINESE J CHEM PHYS 2021. [DOI: 10.1063/1674-0068/cjcp2012219] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Guo-dong Zhang
- Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Li-chang Guan
- Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zi-feng Yan
- Beijing Success Technology Co. ltd, Beijing 100102, China
| | - Min Cheng
- Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hong Gao
- Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
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10
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Schmidt S, Plamper D, Jekkel J, Weitzel KM. Self-Reactions in the HBr + (DBr +) + HBr System: A State-Selective Investigation of the Role of Rotation. J Phys Chem A 2020; 124:8461-8468. [PMID: 32960596 DOI: 10.1021/acs.jpca.0c07361] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Self-reactions observed in the HBr+ (DBr+) + HBr system have been investigated using a guided ion-beam experiment under single-collision conditions. The reaction channels observed are proton transfer/hydrogen abstraction (PT/HA) in the case of HBr+ and deuteron transfer/hydrogen abstraction (DT/HA) and charge transfer (CT) in the case of DBr+. HBr+/DBr+ ions have been formed with rotational energies selected using the resonance-enhanced multiphoton ionization (REMPI) formation process. Cross sections have been measured as a function of the rotational energy of the ion, Erot, and of the center-of-mass collision energy, Ecm. In the region of low rotational energies, the cross section for both PT/HA and DT/HA decreases with increasing ion rotation. In this region, the cross section for CT increases with increasing ion rotation. For higher rotational energies, the cross section increases with increasing ion rotation for PT/HA and less pronounced for DT/HA. The cross section for CT becomes independent of ion rotation for high rotational energies. Since all reaction channels are exothermic, all cross sections decrease with increasing Ecm.
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Affiliation(s)
- Sebastian Schmidt
- Philipps-Universität Marburg, Fachbereich Chemie, Marburg 35032, Germany
| | - Dominik Plamper
- Philipps-Universität Marburg, Fachbereich Chemie, Marburg 35032, Germany
| | - Jasmin Jekkel
- Philipps-Universität Marburg, Fachbereich Chemie, Marburg 35032, Germany
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11
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Ascenzi D, Romanzin C, Lopes A, Tosi P, Žabka J, Polášek M, Shaffer CJ, Alcaraz C. State-Selected Reactivity of Carbon Dioxide Cations ( CO 2 + ) With Methane. Front Chem 2019; 7:537. [PMID: 31428598 PMCID: PMC6688064 DOI: 10.3389/fchem.2019.00537] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Accepted: 07/15/2019] [Indexed: 11/22/2022] Open
Abstract
The reactivity ofCO 2 + with CD4 has been experimentally investigated for its relevance in the chemistry of plasmas used for the conversion of CO2 in carbon-neutral fuels. Non-equilibrium plasmas are currently explored for their capability to activate very stable molecules (such as methane and carbon dioxide) and initiate a series of reactions involving highly reactive species (e.g., radicals and ions) eventually leading to the desired products. Energy, in the form of kinetic or internal excitation of reagents, influences chemical reactions. However, putting the same amount of energy in a different form may affect the reactivity differently. In this paper, we investigate the reaction ofCO 2 + with methane by changing either the kinetic energy ofCO 2 + or its vibrational excitation. The experiments were performed by a guided ion beam apparatus coupled to synchrotron radiation in the VUV energy range to produce vibrationally excited ions. We find that the reactivity depends on the reagent collision energy, but not so much on the vibrational excitation ofCO 2 + . Concerning the product branching ratios (CD 4 + /CD 3 + /DOCO+) there is substantial disagreement among the values reported in the literature. We find that the dominant channel is the production ofCD 4 + , followed by DOCO+ andCD 3 + , as a minor endothermic channel.
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Affiliation(s)
| | - Claire Romanzin
- Laboratoire de Chimie Physique, Bât. 350, UMR 8000, CNRS-Univ. Paris-Sud and Paris Saclay, Centre Universitaire Paris-Sud, Orsay, France
- Synchrotron SOLEIL, L'Orme des Merisiers, Saint-Aubin—BP 48, Gif-sur-Yvette, France
| | - Allan Lopes
- Laboratoire de Chimie Physique, Bât. 350, UMR 8000, CNRS-Univ. Paris-Sud and Paris Saclay, Centre Universitaire Paris-Sud, Orsay, France
| | - Paolo Tosi
- Department of Physics, University of Trento, Trento, Italy
| | - Jan Žabka
- J. Heyrovský Institute of Physical Chemistry of the Czech Academy of Sciences, Prague, Czechia
| | - Miroslav Polášek
- J. Heyrovský Institute of Physical Chemistry of the Czech Academy of Sciences, Prague, Czechia
| | - Christopher J. Shaffer
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czechia
| | - Christian Alcaraz
- Laboratoire de Chimie Physique, Bât. 350, UMR 8000, CNRS-Univ. Paris-Sud and Paris Saclay, Centre Universitaire Paris-Sud, Orsay, France
- Synchrotron SOLEIL, L'Orme des Merisiers, Saint-Aubin—BP 48, Gif-sur-Yvette, France
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12
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Joalland B, Jamal-Eddine N, Papanastasiou D, Lekkas A, Carles S, Biennier L. A mass-selective ion transfer line coupled with a uniform supersonic flow for studying ion–molecule reactions at low temperatures. J Chem Phys 2019; 150:164201. [DOI: 10.1063/1.5086386] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- B. Joalland
- Université de Rennes, CNRS, IPR (Institut de Physique de Rennes)—UMR 6251, F-35000 Rennes, France
| | - N. Jamal-Eddine
- Université de Rennes, CNRS, IPR (Institut de Physique de Rennes)—UMR 6251, F-35000 Rennes, France
| | - D. Papanastasiou
- Fasmatech Science and Technology SA, TESPA Lefkippos, NCSR Demokritos, 15310 Athens, Greece
| | - A. Lekkas
- Fasmatech Science and Technology SA, TESPA Lefkippos, NCSR Demokritos, 15310 Athens, Greece
| | - S. Carles
- Université de Rennes, CNRS, IPR (Institut de Physique de Rennes)—UMR 6251, F-35000 Rennes, France
| | - L. Biennier
- Université de Rennes, CNRS, IPR (Institut de Physique de Rennes)—UMR 6251, F-35000 Rennes, France
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13
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Ogden HM, Michael TJ, Murray MJ, Liu Q, Toro C, Mullin AS. The effect of CO rotation from shaped pulse polarization on reactions that form C2. Phys Chem Chem Phys 2019; 21:14103-14110. [DOI: 10.1039/c8cp06917d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The effect of CO rotational energy on bimolecular reactions to form electronically excited C2 is reported here.
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Affiliation(s)
- Hannah M. Ogden
- Department of Chemistry and Biochemistry
- University of Maryland
- College Park
- USA
| | - Tara J. Michael
- Department of Chemistry and Biochemistry
- University of Maryland
- College Park
- USA
| | | | - Qingnan Liu
- National Institute of Standards and Technology
- Gaithersburg
- USA
| | - Carlos Toro
- Department of Chemistry and Biochemistry
- University of Maryland
- College Park
- USA
| | - Amy S. Mullin
- Department of Chemistry and Biochemistry
- University of Maryland
- College Park
- USA
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14
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Wang Y, Song H, Szabó I, Czakó G, Guo H, Yang M. Mode-Specific SN2 Reaction Dynamics. J Phys Chem Lett 2016; 7:3322-3327. [PMID: 27505286 DOI: 10.1021/acs.jpclett.6b01457] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Despite its importance in chemistry, the microscopic dynamics of bimolecular nucleophilic substitution (SN2) reactions is still not completely elucidated. In this publication, the dynamics of a prototypical SN2 reaction (F(-) + CH3Cl → CH3F + Cl(-)) is investigated using a high-dimensional quantum mechanical model on an accurate potential energy surface (PES) and further analyzed by quasi-classical trajectories on the same PES. While the indirect mechanism dominates at low collision energies, the direct mechanism makes a significant contribution. The reactivity is found to depend on the specific reactant vibrational mode excitation. The mode specificity, which is more prevalent in the direct reaction, is rationalized by a transition-state-based model.
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Affiliation(s)
- Yan Wang
- Key Laboratory of Magnetic Resonance in Biological Systems, National Center for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences , Wuhan 430071, China
- School of Chemical and Environmental Engineering, Hubei University for Nationalities , Enshi 445000, China
| | - Hongwei Song
- Key Laboratory of Magnetic Resonance in Biological Systems, National Center for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences , Wuhan 430071, China
| | - István Szabó
- Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged , Rerrich Béla tér 1, Szeged H-6720, Hungary
| | - Gábor Czakó
- Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged , Rerrich Béla tér 1, Szeged H-6720, Hungary
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico , Albuquerque, New Mexico 87131, United States
| | - Minghui Yang
- Key Laboratory of Magnetic Resonance in Biological Systems, National Center for Magnetic Resonance in Wuhan, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences , Wuhan 430071, China
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15
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Nakai Y, Hidaka H, Watanabe N, Kojima TM. Stepwise formation of H3O(+)(H2O)n in an ion drift tube: Empirical effective temperature of association/dissociation reaction equilibrium in an electric field. J Chem Phys 2016; 144:224306. [PMID: 27306006 DOI: 10.1063/1.4953416] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We measured equilibrium constants for H3O(+)(H2O)n-1 + H2O↔H3O(+)(H2O)n (n = 4-9) reactions taking place in an ion drift tube with various applied electric fields at gas temperatures of 238-330 K. The zero-field reaction equilibrium constants were determined by extrapolation of those obtained at non-zero electric fields. From the zero-field reaction equilibrium constants, the standard enthalpy and entropy changes, ΔHn,n-1 (0) and ΔSn,n-1 (0), of stepwise association for n = 4-8 were derived and were in reasonable agreement with those measured in previous studies. We also examined the electric field dependence of the reaction equilibrium constants at non-zero electric fields for n = 4-8. An effective temperature for the reaction equilibrium constants at non-zero electric field was empirically obtained using a parameter describing the electric field dependence of the reaction equilibrium constants. Furthermore, the size dependence of the parameter was thought to reflect the evolution of the hydrogen-bond structure of H3O(+)(H2O)n with the cluster size. The reflection of structural information in the electric field dependence of the reaction equilibria is particularly noteworthy.
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Affiliation(s)
- Yoichi Nakai
- Radioactive Isotope Physics Laboratory, RIKEN Nishina Center, Wako, Saitama 351-0198, Japan
| | - Hiroshi Hidaka
- Institute of Low Temperature Science, Hokkaido University, Sapporo, Hokkaido 060-0819, Japan
| | - Naoki Watanabe
- Institute of Low Temperature Science, Hokkaido University, Sapporo, Hokkaido 060-0819, Japan
| | - Takao M Kojima
- Atomic Physics Laboratory, RIKEN, Wako, Saitama 351-0198, Japan
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16
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Schlösser M, Rudnev V, González Ureña Á. Radio-frequency ion deflector for mass separation. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2015; 86:103302. [PMID: 26520948 DOI: 10.1063/1.4934201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Electrostatic cylindrical deflectors act as energy analyzer for ion beams. In this article, we present that by imposing of a radio-frequency modulation on the deflecting electric field, the ion transmission becomes mass dependent. By the choice of the appropriate frequency, amplitude, and phase, the deflector can be used as mass filter. The basic concept of the new instrument as well as simple mathematic relations are described. These calculations and further numerical simulations show that a mass sensitivity is achievable. Furthermore, we demonstrate the proof-of-principle in experimental measurements, compare the results to those of from a 1 m linear time-of-flight spectrometer, and comment on the mass resolution of the method. Finally, some potential applications are indicated.
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Affiliation(s)
- Magnus Schlösser
- Unidad de Láseres y Haces Moleculares, Instituto Plurisdisciplinar, Universidad Complutense de Madrid, Madrid 28040, Spain
| | - Vitaly Rudnev
- Unidad de Láseres y Haces Moleculares, Instituto Plurisdisciplinar, Universidad Complutense de Madrid, Madrid 28040, Spain
| | - Ángel González Ureña
- Unidad de Láseres y Haces Moleculares, Instituto Plurisdisciplinar, Universidad Complutense de Madrid, Madrid 28040, Spain
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17
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Martinez O, Ard SG, Li A, Shuman NS, Guo H, Viggiano AA. Temperature-dependent kinetic measurements and quasi-classical trajectory studies for the OH+ + H2/D2 → H2O+/HDO+ + H/D reactions. J Chem Phys 2015; 143:114310. [DOI: 10.1063/1.4931109] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Oscar Martinez
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland AFB, New Mexico 87117-5776, USA
| | - Shaun G. Ard
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland AFB, New Mexico 87117-5776, USA
| | - Anyang Li
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - Nicholas S. Shuman
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland AFB, New Mexico 87117-5776, USA
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - Albert A. Viggiano
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland AFB, New Mexico 87117-5776, USA
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18
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Melko JJ, Ard SG, Shuman NS, Pedder RE, Taormina CR, Viggiano AA. Coupling an electrospray source and a solids probe/chemical ionization source to a selected ion flow tube apparatus. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2015; 86:084101. [PMID: 26329209 DOI: 10.1063/1.4927716] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
A new ion source region has been constructed and attached to a variable temperature selected ion flow tube. The source features the capabilities of electron impact, chemical ionization, a solids probe, and electrospray ionization. The performance of the instrument is demonstrated through a series of reactions from ions created in each of the new source regions. The chemical ionization source is able to create H3O(+), but not as efficiently as similar sources with larger apertures. The ability of this source to support a solids probe, however, greatly expands our capabilities. A variety of rhenium cations and dications are created from the solids probe in sufficient abundance to study in the flow tube. The reaction of Re(+) with O2 proceeds with a rate constant that agrees with the literature measurements, while the reaction of Re2(2+) is found to charge transfer with O2 at about 60% of the collision rate; we have also performed calculations that support the charge transfer pathway. The electrospray source is used to create Ba(+), which is reacted with N2O to create BaO(+), and we find a rate constant that agrees with the literature.
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Affiliation(s)
- Joshua J Melko
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland AFB, New Mexico 87117-5776, USA
| | - Shaun G Ard
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland AFB, New Mexico 87117-5776, USA
| | - Nicholas S Shuman
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland AFB, New Mexico 87117-5776, USA
| | - Randall E Pedder
- Ardara Technologies L.P., 12941 Route 993, Ardara, Pennsylvania 15615, USA
| | | | - Albert A Viggiano
- Air Force Research Laboratory, Space Vehicles Directorate, Kirtland AFB, New Mexico 87117-5776, USA
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19
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Martinez O, Sanchez JC, Ard SG, Li A, Melko JJ, Shuman NS, Guo H, Viggiano AA. Selected-ion flow tube temperature-dependent measurements for the reactions of O2+ with N atoms and N2+ with O atoms. J Chem Phys 2015; 142:154305. [DOI: 10.1063/1.4916913] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Oscar Martinez
- Space Vehicles Directorate, Air Force Research Laboratory, Kirtland AFB, New Mexico 87117-5776, USA
| | - Jenny C. Sanchez
- Space Vehicles Directorate, Air Force Research Laboratory, Kirtland AFB, New Mexico 87117-5776, USA
| | - Shaun G. Ard
- Space Vehicles Directorate, Air Force Research Laboratory, Kirtland AFB, New Mexico 87117-5776, USA
| | - Anyang Li
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - Joshua J. Melko
- Space Vehicles Directorate, Air Force Research Laboratory, Kirtland AFB, New Mexico 87117-5776, USA
| | - Nicholas S. Shuman
- Space Vehicles Directorate, Air Force Research Laboratory, Kirtland AFB, New Mexico 87117-5776, USA
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
| | - Albert A. Viggiano
- Space Vehicles Directorate, Air Force Research Laboratory, Kirtland AFB, New Mexico 87117-5776, USA
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20
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Sun R, Granucci G, Paul AK, Siebert M, Liang HJ, Cheong G, Hase WL, Persico M. Potential energy surfaces for the HBr(+) + CO2 → Br + HOCO(+) reaction in the HBr(+) (2)Π3/2 and (2)Π1/2 spin-orbit states. J Chem Phys 2015; 142:104302. [PMID: 25770535 DOI: 10.1063/1.4913767] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Quantum mechanical (QM) + molecular mechanics (MM) models are developed to represent potential energy surfaces (PESs) for the HBr(+) + CO2 → Br + HOCO(+) reaction with HBr(+) in the (2)Π3/2 and (2)Π1/2 spin-orbit states. The QM component is the spin-free PES and spin-orbit coupling for each state is represented by a MM-like analytic potential fit to spin-orbit electronic structure calculations. Coupled-cluster single double and perturbative triple excitation (CCSD(T)) calculations are performed to obtain "benchmark" reaction energies without spin-orbit coupling. With zero-point energies removed, the "experimental" reaction energy is 44 ± 5 meV for HBr(+)((2)Π3/2) + CO2 → Br((2)P3/2) + HOCO(+), while the CCSD(T) value with spin-orbit effects included is 87 meV. Electronic structure calculations were performed to determine properties of the BrHOCO(+) reaction intermediate and [HBr⋯OCO](+) van der Waals intermediate. The results of different electronic structure methods were compared with those obtained with CCSD(T), and UMP2/cc-pVTZ/PP was found to be a practical and accurate QM method to use in QM/MM direct dynamics simulations. The spin-orbit coupling calculations show that the spin-free QM PES gives a quite good representation of the shape of the PES originated by (2)Π3/2HBr(+). This is also the case for the reactant region of the PES for (2)Π1/2 HBr(+), but spin-orbit coupling effects are important for the exit-channel region of this PES. A MM model was developed to represent these effects, which were combined with the spin-free QM PES.
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Affiliation(s)
- Rui Sun
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - Giovanni Granucci
- Dipartimento di Chimica e Chimica Industriale, University of Pisa, Pisa, Italy
| | - Amit K Paul
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - Matthew Siebert
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - Hongliang J Liang
- Department of Engineering, Swarthmore College, Swarthmore, Pennsylvania 19081, USA
| | - Grace Cheong
- Department of Chemistry, Haverford College, Haverford, Pennsylvania 19041, USA
| | - William L Hase
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, USA
| | - Maurizio Persico
- Dipartimento di Chimica e Chimica Industriale, University of Pisa, Pisa, Italy
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21
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Uhlemann T, Wallauer J, Weitzel KM. Self-reactions in the HCl+ (DCl+) + HCl system: a state-selective investigation of the role of rotation. Phys Chem Chem Phys 2015; 17:16454-61. [DOI: 10.1039/c5cp02266e] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The cross sections for the self-reaction of state-selected HCl+ (DCl+) ions with HCl are shown to depend characteristically on the rotational velocity of the ion relative to that of the neutral.
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Affiliation(s)
- Till Uhlemann
- Philipps-Universität Marburg
- Fachbereich Chemie
- Marburg
- Germany
| | - Jens Wallauer
- Philipps-Universität Marburg
- Fachbereich Chemie
- Marburg
- Germany
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22
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Ard SG, Li A, Martinez O, Shuman NS, Viggiano AA, Guo H. Experimental and Theoretical Kinetics for the H2O+ + H2/D2 → H3O+/H2DO+ + H/D Reactions: Observation of the Rotational Effect in the Temperature Dependence. J Phys Chem A 2014; 118:11485-9. [DOI: 10.1021/jp510399v] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Shaun G. Ard
- Space
Vehicle Directorate, Air Force Research Laboratory, Kirtland AFB, Albuquerque, New Mexico 87117, United States
| | - Anyang Li
- Department
of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Oscar Martinez
- Space
Vehicle Directorate, Air Force Research Laboratory, Kirtland AFB, Albuquerque, New Mexico 87117, United States
| | - Nicholas S. Shuman
- Space
Vehicle Directorate, Air Force Research Laboratory, Kirtland AFB, Albuquerque, New Mexico 87117, United States
| | - Albert A. Viggiano
- Space
Vehicle Directorate, Air Force Research Laboratory, Kirtland AFB, Albuquerque, New Mexico 87117, United States
- Department
of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Hua Guo
- Department
of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, New Mexico 87131, United States
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23
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Ard SG, Melko JJ, Jiang B, Li Y, Shuman NS, Guo H, Viggiano AA. Temperature dependences for the reactions of O2−and O−with N and O atoms in a selected-ion flow tube instrument. J Chem Phys 2013; 139:144302. [DOI: 10.1063/1.4824018] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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24
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Schuhfried E, Probst M, Limtrakul J, Wannakao S, Aprea E, Cappellin L, Märk TD, Gasperi F, Biasioli F. Sulfides: chemical ionization induced fragmentation studied with proton transfer reaction-mass spectrometry and density functional calculations. JOURNAL OF MASS SPECTROMETRY : JMS 2013; 48:367-378. [PMID: 23494794 DOI: 10.1002/jms.3153] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2012] [Revised: 11/26/2012] [Accepted: 12/06/2012] [Indexed: 06/01/2023]
Abstract
We report the energy-dependent fragmentation patterns upon protonation of eight sulfides (organosulfur compounds) in Proton Transfer Reaction-Mass Spectrometry (PTR-MS). Studies were carried out, both, experimentally with PTR-MS, and with theoretical quantum-chemical methods. Charge retention usually occurred at the sulfur-containing fragment for short chain sulfides. An exception to this is found in the unsaturated monosulfide allylmethyl sulfide (AMS), which preferentially fragmented to a carbo-cation at m/z 41, C3H5(+). Quantum chemical calculations (DFT with the M062X functional 6-31G(d,p) basis sets) for the fragmentation reaction pathways of AMS indicated that the most stable protonated AMS cation at m/z 89 is a protonated (cyclic) thiirane, and that the fragmentation reaction pathways of AMS in the drift tube are kinetically controlled. The protonated parent ion MH(+) is the predominant product in PTR-MS, except for diethyl disulfide at high collisional energies. The saturated monosulfides R-S-R' (with R<R') have little or no fragmentation, at the same time the most abundant fragment ion is the smaller R-S(+) fragment. The saturated disulfides R-S-S-R display more fragmentation than the saturated monosulfides, the most common fragments are disulfide containing fragments or long-chain carbo-cations. The results rationalize fragmentation data for saturated monosulfides and disulfides and represent a detailed analysis of the fragmentation of an unsaturated sulfide. Apart from the theoretical interest, the results are in support of the quantitative analysis of sulfides with PTR-MS, all the more so as PTR-MS is one of a few techniques that allow for ultra-low quantitative analysis of sulfides.
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Affiliation(s)
- Erna Schuhfried
- Institut für Ionenphysik und Angewandte Physik, Leopold Franzens Universität Innsbruck, Technikerstr. 25, A-6020, Innsbruck, Austria
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25
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Paetow L, Unger F, Beutel B, Weitzel KM. Rotational dependence of the proton-transfer reaction HBr+ + CO2 → HOCO+ + Br. II. Comparison of HBr+ (2Π(3/2)) and HBr+ (2Π(1/2)). J Chem Phys 2010; 133:234301. [PMID: 21186865 DOI: 10.1063/1.3515300] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The effects of reactant ion rotational excitation on the exothermic proton-transfer reactions of HBr(+)((2)Π(1/2)) and DBr(+)((2)Π(1/2)), respectively, with CO(2) were studied in a guided ion beam apparatus. Cross sections are presented for collision energies in the center of mass system E(c.m.) in the range of 0.23 to 1.90 eV. The HBr(+)/DBr(+) ions were prepared in a state-selective manner by resonance enhanced multiphoton ionization. The mean rotational energy was varied from 3.4 to 46.8 meV for HBr(+)((2)Π(1/2)) and from 1.8 to 40.9 meV for DBr(+)((2)Π(1/2)). Both reactions studied are inhibited by collision energy, as expected for exothermic reactions. For all collision energies considered, the cross section decreases with increasing rotational energy of the ion, but the degree of the rotational dependence differs depending on the collision energy. For E(c.m.) = 0.31 eV, the cross sections of the deuteron transfer are significantly larger than those of the proton transfer. For higher E(c.m.) they differ very little. The current results for the exothermic proton transfer are systematically compared to previously published data for the endothermic proton transfer starting from HBr(+)((2)Π(3/2)) [L. Paetow et al., J. Chem. Phys. 132, 174305 (2010)]. Additional new data regarding the latter reaction are presented to further confirm the conclusions. The dependences on rotational excitation found cannot be explained by the corresponding change in the total energy of the system. For both the endothermic and the exothermic reaction, the cross section is maximized for the smallest rotational energy, at least well above the threshold.
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Affiliation(s)
- Lisa Paetow
- Philipps-Universität Marburg, Fachbereich Chemie, Hans-Meerwein-Straβe, 35032 Marburg, Germany
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26
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Paetow L, Unger F, Beichel W, Frenking G, Weitzel KM. Rotational dependence of the proton-transfer reaction HBr++CO2→HOCO++Br. I. Energy versus angular momentum effects. J Chem Phys 2010; 132:174305. [DOI: 10.1063/1.3409734] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
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27
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Bruhns H, Kreckel H, Miller K, Lestinsky M, Seredyuk B, Mitthumsiri W, Schmitt BL, Schnell M, Urbain X, Rappaport ML, Havener CC, Savin DW. A novel merged beams apparatus to study anion-neutral reactions. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2010; 81:013112. [PMID: 20113086 DOI: 10.1063/1.3280227] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2009] [Accepted: 12/08/2009] [Indexed: 05/28/2023]
Abstract
We have developed a novel laboratory instrument for studying gas phase, anion-neutral chemistry. To the best of our knowledge, this is the first such apparatus which uses fast merged beams to investigate anion-neutral chemical reactions. As proof-of-principle we have detected the associative detachment reaction H(-)+H-->H(2)+e(-). Here we describe the apparatus in detail and discuss related technical and experimental issues.
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Affiliation(s)
- H Bruhns
- Columbia Astrophysics Laboratory, Columbia University, New York, New York 10027-6601, USA
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28
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Athenstädt S, Unger F, Weitzel KM. Rotational Dependence of the Proton Transfer Reaction HBr+ (N+) + CO2 → HOCO+ + Br. Z PHYS CHEM 2009. [DOI: 10.1524/zpch.2007.221.5.571] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Absolute cross sections and rate constants for the endothermic proton transfer reaction of rotationally state selected HBr+ ions with CO2 were measured as a function of the rotational energy for different center-of-mass (c.m.) collision energies. State selection of HBr+ ions was achieved via a (2+1) resonance enhanced multiphoton ionization (REMPI) process. By choosing different pump lines the mean rotational energy of HBr+ was varied from 1.6 to 25.9 meV. All experiments were performed in a linear ion guide apparatus. Collision energies considered ranged from 0.28 to 0.85 eV (c.m.). At the highest collision energies the cross section decreases by about 60% from 10 Å2 to 4 Å2 with increasing rotational energy. In contrast to that, at the lowest collision energies the cross section was about 2.5 Å2, independent of the rotational energy.
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29
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de Gouw J, Warneke C. Measurements of volatile organic compounds in the earth's atmosphere using proton-transfer-reaction mass spectrometry. MASS SPECTROMETRY REVIEWS 2007; 26:223-57. [PMID: 17154155 DOI: 10.1002/mas.20119] [Citation(s) in RCA: 331] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Proton-transfer-reaction mass spectrometry (PTR-MS) allows real-time measurements of volatile organic compounds (VOCs) in air with a high sensitivity and a fast time response. The use of PTR-MS in atmospheric research has expanded rapidly in recent years, and much has been learned about the instrument response and specificity of the technique in the analysis of air from different regions of the atmosphere. This paper aims to review the progress that has been made. The theory of operation is described and allows the response of the instrument to be described for different operating conditions. More accurate determinations of the instrument response involve calibrations using standard mixtures, and some results are shown. Much has been learned about the specificity of PTR-MS from inter-comparison studies as well the coupling of PTR-MS with a gas chromatographic interface. The literature on this issue is reviewed and summarized for many VOCs of atmospheric interest. Some highlights of airborne measurements by PTR-MS are presented, including the results obtained in fresh and aged forest-fire and urban plumes. Finally, the recent work that is focused on improving the technique is discussed.
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Affiliation(s)
- Joost de Gouw
- Chemical Sciences Division, Earth System Research Laboratory, National Oceanic and Atmospheric Administration, Boulder, Colorado 80305, USA.
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30
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Poutsma JC, Midey AJ, Thompson TH, Viggiano AA. Absolute Rate Coefficients and Branching Percentages for the Reactions of POxCly- + N (4S3/2) and POxCly- + O (3P) at 298 K in a Selected-Ion Flow Tube Instrument. J Phys Chem A 2006; 110:11315-9. [PMID: 17004740 DOI: 10.1021/jp063739p] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The absolute rate coefficients and product ion branching percentages at 298 K for the reactions of several POxCly- species with atomic nitrogen (N (4S(3/2))) and atomic oxygen (O (3P)) have been determined in a selected-ion flow tube (SIFT) instrument. POxCly- ions are generated by electron impact on POCl3 in a high-pressure source. O atoms are generated by quantitative titration of N atoms with NO, where N atoms are produced by microwave discharge on N2. The experimental procedure allows for the determination of rate coefficients for the reaction of the reactant ion with N (4S(3/2)) and O (3P) as well as with N2 and NO. None of the ions react with N2 or NO, giving an upper limit to the rate coefficient of <5 x 10(-12) cm3 molecules(-1) s(-1). POCl3- and POCl2- do not react with N atoms, giving an upper limit to the rate coefficient of <1 x 10(-11) cm3 molecules(-1) s(-1). The major product ion for POCl3- and POCl2- reacting with O involves loss of Cl from the reactant ion, accounting for >85% of the products. PO2- is a minor product (<or=4%) from POCl2- + O. Only PO2Cl- reacts with both N and O, directly giving PO2- and PO3- as major products. In addition, calculations of the structures and energies for PO2N, PO2N-, and NCl have been performed at the G3 level of theory to obtain estimates for the energetics of the PO2Cl- reactions. PO2-, PO3-, and PO2Cl2- are all unreactive with both N and O. Comparisons of the reactivity of POxCly- ions with O atoms are made to previous reactivity studies of these ions. In particular, routes that yield the very stable PO2- and PO3- ions are discussed.
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Affiliation(s)
- John C Poutsma
- Space Vehicles Directorate, Air Force Research Laboratory, Hanscom Air Force Base, Massachusetts 01731, USA
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31
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Viggiano AA. Reexamination of ionospheric chemistry: high temperature kinetics, internal energy dependences, unusual isomers, and corrections. Phys Chem Chem Phys 2006; 8:2557-71. [PMID: 16738710 DOI: 10.1039/b603585j] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A number of aspects of ionospheric chemistry are revisited. The review discusses in detail only work performed at AFRL, but other work is mentioned. A large portion of the paper discusses measurements of the kinetics of upper ionospheric reactions at very high temperatures, i.e. the upper temperature range has been extended to at least 1400 K and in some cases to 1800 K. These temperatures are high enough to excite vibrations in O2, N2, and NO and comparing them to drift tube data allows information on the rotational temperature and vibrational level dependences to be derived. Rotational and translational energy are equivalent in controlling the kinetics in most reactions. Vibrational energy in O2 and N2 is often found to promote reactivity which is shown to cause ionospheric density depletions. NO vibrations do not significantly affect the reactivity. In a number of cases, detailed calculations accompanied the experimental studies and elucidated details of the mechanisms. Kinetics of two peroxide isomers important in the lower ionospheric have been measured for the first time, i.e. NOO+ and ONOO-. Finally, two examples are shown where errors in previous data are corrected.
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Affiliation(s)
- A A Viggiano
- Air Force Research Laboratory, Space Vehicles Directorate, 29 Randolph Rd., Hanscom Air Force Base, MA 01731-3010, USA
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32
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Miller TM, Friedman JF, Williamson JS, Viggiano AA. Rate constants for the reactions of CO3- and O3- with SO2 from 300 to 1440 K. J Chem Phys 2006; 124:144305. [PMID: 16626194 DOI: 10.1063/1.2181572] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Rate constants for the reactions of CO(3) (-) and O(3) (-) with SO(2) have been measured between 300 and 1440 K in a high temperature flowing afterglow apparatus. The CO(3) (-) rate constants near to the collision rate at low temperatures and fall by about a factor of 50 with temperature until a broad minimum is reached at 900-1300 K. The highest temperature point shows the increasing rate constant. Comparison to drift tube data taken in a helium buffer shows that total energy controls the reactivity, presumably because the reaction goes through a long lived complex even at 1440 K. The reaction of O(3) (-) with SO(2) was studied up to 1400 K. The rate constant is collisional until 700 K and then decreases with increasing temperature. Rate constants measured at 1300 and 1400 K appear to show an increase, but that observation is questionable since O(3) (-) could not be made cleanly. The O(3) (-) data at 1200 K and below show that total energy controls reactivity in that range.
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Affiliation(s)
- Thomas M Miller
- Air Force Research Laboratory, Space Vehicles Directorate, Hanscom Air Force Base, Massachusetts 01731-3010, USA
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33
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Midey AJ, Fernandez AI, Viggiano AA, Zhang P, Morokuma K. Ion chemistry of NOO+. J Chem Phys 2006; 124:114313. [PMID: 16555894 DOI: 10.1063/1.2177257] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
The kinetics for the reactions of NOO+ ions with neutral molecules having ionization potentials (IPs) from 9.27 to 15.58 eV was measured in a selected ion flow tube at 298 K. The NOO+ ions are produced from the reaction of N3+ + O2 and have been reacted with the following: NO, C6F6, CS2, CF3I, C3F6, OCS, C2H6, Xe, SO2, O3, N2O, CO2, Kr, CO, D2, and N2. Numerous types of reactions were observed with the various neutral reagents, including production of NO+ (which may involve loss of an O from the ion or addition of O to the neutral reactant, although the two channels could not be distinguished here), charge transfer, isomerization of NOO+ to ONO+, and hydride abstraction. High level theoretical calculations of the structures and energetics of the various isomers, electronic states, and transition states of NOO and NOO+ were performed to better understand the observed reactivity. All neutral species with an IP< or =11.18 eV were observed to react with NOO+ in part by charge transfer. Detailed calculations showed that the recommended adiabatic and vertical IPs of NOO are 10.4 and 11.7 eV, respectively, at the MRCISDQ/AVQZ level of theory. The observed experimental limit for charge transfer of 11.18 eV agreed well with the energetics of the final products obtained from theory if dissociation of the neutral metastable product occurred, i.e., the products were X+ +[O(3P) + NO(2Pi)], where [O(3P)+NO(2Pi)] formed via dissociation of metastable NOO. Charge exchange with neutral reagent X would, therefore, be exothermic if IP(X)<[IPad(NOO)-DeltaE(O+NO)-NOO]= approximately 11.1 eV, where IPad(NOO) is the adiabatic IP. The potential energy surface for the reaction of NOO+ with C2H6 was also calculated, indicating that two pathways for formation of HNO2 + C2H5 (+) exist.
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Affiliation(s)
- A J Midey
- Air Force Research Laboratory, Space Vehicles Directorate, Hanscom Air Force Base, Massachusetts 01731-3010, USA.
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Poutsma JC, Midey AJ, Viggiano AA. Absolute rate coefficients for the reactions of O2−+N(S3∕24) and O2−+O(P3) at 298 K in a selected-ion flow tube instrument. J Chem Phys 2006; 124:74301. [PMID: 16497030 DOI: 10.1063/1.2168152] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The absolute rate coefficients at 298 K for the reactions of O(2) (-) + N((4)S(3/2)) and O(2) (-) + O((3)P) have been determined in a selected-ion flow tube instrument. O atoms are generated by the quantitative titration of N atoms with NO, where the N atoms are produced by microwave discharge on N(2). The experimental procedure allows for the determination of rate constants for the reaction of the reactant ion with N((4)S(3/2)) and O((3)P). The rate coefficient for O(2) (-) + N is found to be 2.3x10(-10)+/-40% cm(3) molecule(-1) s(-1), a factor of 2 slower than previously determined. In addition, it was found that the reaction proceeds by two different reaction channels to give (1) NO(2)+e(-) and (2) O(-)+NO. The second channel was not reported in the previous study and accounts for ca. 35% of the reaction. An overall rate coefficient of 3.9 x 10(-10) cm(3) molecule(-1) s(-1) was determined for O(2) (-) + O, which is slightly faster than previously reported. Branching ratios for this reaction were determined to be <55%O(3) + e(-) and >45%O(-) + O(2).
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Affiliation(s)
- John C Poutsma
- Air Force Research Laboratory, Space Vehicles Directorate, Hanscom Air Force Base, Massachusetts 01731, USA
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Uselman B, Liu J, Boyle J, Anderson S. State-Selective Preparation of NO2+ and the Effects of NO2+ Vibrational Mode on Charge Transfer with NO. J Phys Chem A 2005; 110:1278-87. [PMID: 16435788 DOI: 10.1021/jp053269j] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Two color resonance-enhanced multiphoton ionization (REMPI) scheme of NO(2) through the E (2)Sigma(u)(+) (3psigma) Rydberg state was used to prepare NO(2)(+) in its ground and (100), (010), (02(0)0), (02(2)0), and (001) vibrational states. Photoelectron spectroscopy was used to verify >96% state selection purity, in good agreement with results of Bell et al. for a similar REMPI scheme. The effects of NO(2)(+) vibrational excitation on charge transfer with NO have been studied over the center-of-mass collision energy (E(col)) range from 0.07 to 2.15 eV. Charge transfer is strongly suppressed by collision energy at E(col) < approximately 0.25 eV but is independent of E(col) at higher energies. Mode-specific vibrational effects are observed for both the integral and differential cross-sections. The NO(2)(+) bending vibration strongly enhances charge transfer, with enhancement proportional to the bending quantum number, and is not dependent on the bending angular momentum. The enhancement results from increased charge transfer probability in large impact parameter collisions that lead to small deflection angles. The symmetric stretch also enhances reaction at low collision energies, albeit less efficiently than the bend. The asymmetric stretch has virtually no effect, despite being the highest-energy mode. A model is proposed to account for both the collision energy and the vibrational state dependence.
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Affiliation(s)
- Brady Uselman
- Department of Chemistry, University of Utah, 315 S. 1400 E. Rm 2020, Salt Lake City, Utah 84112, USA
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Abstract
A brief review is presented of post-RRKM models for unimolecular reaction kinetics. The dynamics of the gas-phase S(N)2 reaction are discussed, and the important role of phase-space bottlenecks is highlighted. The remainder of the review is devoted to experimental and trajectory simulation results on thermal reactions of organic molecules that exhibit nonstatistical dynamics quite unlike that seen in the S(N)2 reaction. Specifically, the intermediates generated in these reactions decay much faster than RRKM theory would predict, and often with bimodal or multimodal lifetime distributions. A qualitative model for this behavior based on overlaps of transitional regions in the molecular phase space is discussed.
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Affiliation(s)
- Barry K Carpenter
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York 14853-1301, USA.
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KATO S. Fundamental Aspects of Gas Phase Ion Chemistry Studied Using the Selected Ion Flow Tube Technique. ACTA ACUST UNITED AC 2005. [DOI: 10.5702/massspec.53.183] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Viggiano AA, Fernandez AI, Troe J. Ion–molecule kinetics at 15–700 Torr. Phys Chem Chem Phys 2005; 7:1533-9. [DOI: 10.1039/b417454b] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Midey AJ, Miller TM, Viggiano AA. Reactions of N+, N2+, and N3+ with NO from 300 to 1400 K. J Chem Phys 2004; 121:6822-9. [PMID: 15473739 DOI: 10.1063/1.1792232] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Rate constants have been measured from 300 to 1400 K in a selected ion flow tube (SIFT) and a high temperature flowing afterglow for the reactions of N+, N2+ and N3+ with NO. In all of the systems, the rate constants are substantially less than the collision rate constant. Comparing the high temperature results to kinetics studies as a function of translational energy show that all types of energy (translational, rotational, and vibrational) affect the reactivity approximately equally for all three ions. Branching ratios have also been measured at 300 and 500 K in a SIFT for the N+ and N3+ reactions. An increase in the N2+ product at the expense of NO+ nondissociative charge transfer product occurs at 500 K with N+. The branching ratios for the reaction of N3+ with NO have also been measured in the SIFT, showing that only nondissociative charge transfer giving NO+ occurs up to 500 K. The current results are discussed in the context of the many previous studies of these ions in the literature.
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Affiliation(s)
- Anthony J Midey
- Air Force Research Laboratory, Space Vehicles Directorate, Hanscom Air Force Base, Massachusetts 01731-3010, USA.
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Fernandez AI, Midey AJ, Miller TM, Viggiano AA. Reaction Kinetics of PO2Cl-, PO2Cl2-, POCl2-, and POCl3- with O2 and O3 from 163 to 400 K. J Phys Chem A 2004. [DOI: 10.1021/jp047545q] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Abel I. Fernandez
- Air Force Research Laboratory, Space Vehicles Directorate, 29 Randolph Road, Hanscom AFB, Massachusetts 01731-3010
| | - Anthony J. Midey
- Air Force Research Laboratory, Space Vehicles Directorate, 29 Randolph Road, Hanscom AFB, Massachusetts 01731-3010
| | - Thomas M. Miller
- Air Force Research Laboratory, Space Vehicles Directorate, 29 Randolph Road, Hanscom AFB, Massachusetts 01731-3010
| | - A. A. Viggiano
- Air Force Research Laboratory, Space Vehicles Directorate, 29 Randolph Road, Hanscom AFB, Massachusetts 01731-3010
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Belikov AE, Smith MA. Low-Temperature Kinetics of the Charge- and Atom-Transfer Reactions (Br+, HBr+ [2Πi, v+], DBr+ [2Πi , v+]) + (HBr, DBr) → (HBr+, DBr+, H2Br+, D2Br+, HDBr+). J Phys Chem A 2004. [DOI: 10.1021/jp031254k] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Andrey E. Belikov
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721
| | - Mark A. Smith
- Department of Chemistry, University of Arizona, Tucson, Arizona 85721
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Williams S, Knighton WB, Midey AJ, Viggiano AA, Irle S, Wang Q, Morokuma K. Oxidation of Alkyl Ions, CnH2n+1+(n= 1−5), in Reactions with O2and O3in the Gas Phase. J Phys Chem A 2004. [DOI: 10.1021/jp031099+] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Liu J, Van Devener B, Anderson SL. Reaction of formaldehyde cation with methane: Effects of collision energy and H2CO+ and methane vibrations. J Chem Phys 2003. [DOI: 10.1063/1.1577312] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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de Gouw J, Warneke C, Karl T, Eerdekens G, van der Veen C, Fall R. Sensitivity and specificity of atmospheric trace gas detection by proton-transfer-reaction mass spectrometry. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY 2003; 223-224:365-382. [PMID: 0 DOI: 10.1016/s1387-3806(02)00926-0] [Citation(s) in RCA: 94] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
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Armentrout PB. Mass spectrometry--not just a structural tool: the use of guided ion beam tandem mass spectrometry to determine thermochemistry. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2002; 13:419-434. [PMID: 12019967 DOI: 10.1016/s1044-0305(02)00347-1] [Citation(s) in RCA: 127] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Guided ion beam tandem mass spectrometry has proved to be a robust tool for the measurement of thermodynamic information. Over the past twenty years, we have elucidated a number of factors necessary to make such thermochemistry accurate. Careful attention must be paid to the reduction of the raw data, ion intensities versus laboratory ion energies, to a more useful form, reaction cross sections versus relative kinetic energy. Analysis of the kinetic energy dependence of cross sections for endothermic reactions can then reveal thermodynamic data for both bimolecular and collision-induced dissociation (CID) processes. Such analyses need to include consideration of the explicit kinetic and internal energy distributions of the reactants, the effects of multiple collisions, the identity of the collision partner in CID processes, the kinetics of the reaction being studied, and competition between parallel reactions. This work provides examples illustrating the need to consider this multitude of effects along with details of the procedures developed in our group for handling each of them.
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Affiliation(s)
- P B Armentrout
- Department of Chemistry, University of Utah, Salt Lake City 84112, USA.
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Williams S, Campos MF, Midey AJ, Arnold ST, Morris RA, Viggiano AA. Negative Ion Chemistry of Ozone in the Gas Phase. J Phys Chem A 2002. [DOI: 10.1021/jp012929r] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Skip Williams
- Air Force Research Laboratory, Space Vehicles Directorate, 29 Randolph Road, Hanscom AFB, Massachusetts 01731-3010
| | - Meghann F. Campos
- Air Force Research Laboratory, Space Vehicles Directorate, 29 Randolph Road, Hanscom AFB, Massachusetts 01731-3010
| | - Anthony J. Midey
- Air Force Research Laboratory, Space Vehicles Directorate, 29 Randolph Road, Hanscom AFB, Massachusetts 01731-3010
| | - Susan T. Arnold
- Air Force Research Laboratory, Space Vehicles Directorate, 29 Randolph Road, Hanscom AFB, Massachusetts 01731-3010
| | - Robert A. Morris
- Air Force Research Laboratory, Space Vehicles Directorate, 29 Randolph Road, Hanscom AFB, Massachusetts 01731-3010
| | - Albert A. Viggiano
- Air Force Research Laboratory, Space Vehicles Directorate, 29 Randolph Road, Hanscom AFB, Massachusetts 01731-3010
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Belikov AE, Mullen C, Smith MA. State-specific reactions HBr+(2Πi,v+)+(H2, HBr)→H2Br+ at low collisional energies. J Chem Phys 2001. [DOI: 10.1063/1.1355661] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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48
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Dotan I, Viggiano AA. Kinetics of the reaction of O2+ with CH4 from 500 to 1400 K: A case for state specific chemistry. J Chem Phys 2001. [DOI: 10.1063/1.1352033] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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49
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Midey AJ, Viggiano AA. Mobilities of NH4+(NH3)n clusters in helium from 100 K to 298 K. J Chem Phys 2001. [DOI: 10.1063/1.1354136] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
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50
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Ion-molecule kinetics at high temperatures (300–1800 K). ACTA ACUST UNITED AC 2001. [DOI: 10.1016/s1071-9687(01)80006-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/07/2023]
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