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Liu Z, Tang Y, Niu S, Shan X, Xu C, Chen X. Electron Momentum Spectroscopy Study on the Valence Electronic Structure of Dimethyl Sulfide Considering Vibrational Effects. J Phys Chem A 2020; 124:8551-8561. [PMID: 32966068 DOI: 10.1021/acs.jpca.0c07438] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We report an electron momentum spectroscopy study on the valence electronic structure of dimethyl sulfide. The binding energy and electron momentum profiles are measured using a high-sensitivity (e, 2e) apparatus employing a symmetric non-coplanar geometry at an incident energy of 1200 eV plus binding energy. The measurements are compared with the theoretical calculations by density functional theory performed both at equilibrium molecular geometry and by considering vibrational effects through a harmonic analytical quantum mechanical approach. The results demonstrate a significant influence of nuclear vibrational motions on the momentum profiles for valence orbitals of dimethyl sulfide, especially for 5b2, 1a2, and 4b2. A detailed analysis shows that the observed vibrational effects come mainly from vibrational normal modes breaking the mirror symmetry of (CH3)2S with respect to a plane perpendicular to the O-S-O plane.
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Affiliation(s)
- ZhaoHui Liu
- Hefei National Laboratory for Physical Sciences at the Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - YaGuo Tang
- Hefei National Laboratory for Physical Sciences at the Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - ShanShan Niu
- Hefei National Laboratory for Physical Sciences at the Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Xu Shan
- Hefei National Laboratory for Physical Sciences at the Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - ChunKai Xu
- Hefei National Laboratory for Physical Sciences at the Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - XiangJun Chen
- Hefei National Laboratory for Physical Sciences at the Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
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Kishimoto N, Ohno K. Outer valence ionic states of Cr(CO)6 and (eta(5)-C5H5)Co(CO)2 observed by two-dimensional penning ionization electron spectroscopy. J Phys Chem A 2009; 113:14559-64. [PMID: 19715352 DOI: 10.1021/jp9040524] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Outer valence ionic states of Cr(CO)(6) and (eta(5)-C(5)H(5))Co(CO)(2) were investigated by means of Penning ionization electron spectroscopy (PIES) upon collision with metastable He*(2(3)S) excited atoms as well as high-level ab initio molecular orbital calculations taking electron correlation effects into consideration. By the 2D measurement combining the collision-energy-resolved technique of the metastable atomic beam and electron spectroscopy, ionic-state-resolved measurement of collision energy dependence of partial ionization cross sections (CEDPICS) was carried out. Because partial Penning ionization cross sections can be connected to the spatial extent of corresponding molecular orbitals (MOs) outside the boundary surface of colliding He* atoms, different slopes of CEDPICS were related to anisotropic interaction around the MO region. The observed CEDPICS and PIES band intensity were consistent with the order of calculated ionic states.
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Affiliation(s)
- Naoki Kishimoto
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
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Plekan O, Feyer V, Richter R, Coreno M, de Simone M, Prince KC, Carravetta V. Investigation of the Amino Acids Glycine, Proline, and Methionine by Photoemission Spectroscopy. J Phys Chem A 2007; 111:10998-1005. [DOI: 10.1021/jp075384v] [Citation(s) in RCA: 99] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Oksana Plekan
- Sincrotrone Trieste, Area Science Park, I-34012 Basovizza (Trieste), Italy, CNR-IMIP, Montelibretti (Rome), I-00016 Italy, Laboratorio Nazionale TASC, CNR-INFM, 34012 Trieste, Italy, and CNR-Institute of Chemical Physical Processes, Via Moruzzi 1, 56124 Pisa, Italy
| | - Vitaliy Feyer
- Sincrotrone Trieste, Area Science Park, I-34012 Basovizza (Trieste), Italy, CNR-IMIP, Montelibretti (Rome), I-00016 Italy, Laboratorio Nazionale TASC, CNR-INFM, 34012 Trieste, Italy, and CNR-Institute of Chemical Physical Processes, Via Moruzzi 1, 56124 Pisa, Italy
| | - Robert Richter
- Sincrotrone Trieste, Area Science Park, I-34012 Basovizza (Trieste), Italy, CNR-IMIP, Montelibretti (Rome), I-00016 Italy, Laboratorio Nazionale TASC, CNR-INFM, 34012 Trieste, Italy, and CNR-Institute of Chemical Physical Processes, Via Moruzzi 1, 56124 Pisa, Italy
| | - Marcello Coreno
- Sincrotrone Trieste, Area Science Park, I-34012 Basovizza (Trieste), Italy, CNR-IMIP, Montelibretti (Rome), I-00016 Italy, Laboratorio Nazionale TASC, CNR-INFM, 34012 Trieste, Italy, and CNR-Institute of Chemical Physical Processes, Via Moruzzi 1, 56124 Pisa, Italy
| | - Monica de Simone
- Sincrotrone Trieste, Area Science Park, I-34012 Basovizza (Trieste), Italy, CNR-IMIP, Montelibretti (Rome), I-00016 Italy, Laboratorio Nazionale TASC, CNR-INFM, 34012 Trieste, Italy, and CNR-Institute of Chemical Physical Processes, Via Moruzzi 1, 56124 Pisa, Italy
| | - Kevin C. Prince
- Sincrotrone Trieste, Area Science Park, I-34012 Basovizza (Trieste), Italy, CNR-IMIP, Montelibretti (Rome), I-00016 Italy, Laboratorio Nazionale TASC, CNR-INFM, 34012 Trieste, Italy, and CNR-Institute of Chemical Physical Processes, Via Moruzzi 1, 56124 Pisa, Italy
| | - Vincenzo Carravetta
- Sincrotrone Trieste, Area Science Park, I-34012 Basovizza (Trieste), Italy, CNR-IMIP, Montelibretti (Rome), I-00016 Italy, Laboratorio Nazionale TASC, CNR-INFM, 34012 Trieste, Italy, and CNR-Institute of Chemical Physical Processes, Via Moruzzi 1, 56124 Pisa, Italy
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Kishimoto N, Ohno K. Observation of anisotropic interactions between metastable atoms and target molecules by two-dimensional collisional ionization electron spectroscopy. INT REV PHYS CHEM 2007. [DOI: 10.1080/01442350601053393] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Yamazaki M, Kishimoto N, Ohno K. Collision-Energy-Resolved Penning Ionization Electron Spectroscopy of Thiazole and Benzothiazole: Study of Ionic States and Anisotropic Interactions between a Metastable He*(23S) Atom and Hetero Cyclic Compounds. J Phys Chem A 2006; 110:7097-104. [PMID: 16737259 DOI: 10.1021/jp061573m] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Anisotropic interactions between a metastable He(2(3)S) atom and aromatic heterocyclic compounds (thiazole and benzothiazole) as well as their electronic structures were studied by means of collision-energy/electron-energy resolved two-dimensional Penning ionization electron spectroscopy combined with ab initio molecular orbital calculations. Different collision-energy dependence of partial ionization cross sections (CEDPICS) were clearly observed for different ionic states depending on anisotropic extents of molecular orbitals from which an electron is removed. It was found that thiazole and benzothiazole most strongly attract a He(2(3)S) atom around the region where the nitrogen lone pair orbital extends. For another heteroatom, sulfur, it is relatively weak, but a certain attractive interaction was found for the directions perpendicular to the molecular plane. Benzothiazole was shown to widely attract a He(2(3)S) atom in the out-of-plane directions, since the benzene moiety showed a deeper potential well than the five-membered ring. Assignments of the ionic states including shake-up states were also discussed from observed CEDPICS and ab initio molecular orbital calculations. In particular, for the satellite bands, a negative collision energy dependence of the band intensity was well supported by a configuration-interaction calculation that assigns the satellite bands to be the ionization from pi orbitals accompanying pi-pi or n-pi excitations.
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Affiliation(s)
- Masakazu Yamazaki
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai, Japan
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Ohno K. Exterior Characteristics of Molecular Orbitals and Molecular Surfaces as Studied by Atomic Probes. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2004. [DOI: 10.1246/bcsj.77.887] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Maruyama R, Ohno K. Two-Dimensional Penning Ionization Electron Spectroscopy of 2-Aminoethanol and Related Molecules by He*(23S) Atoms: Influence of Intramolecular Hydrogen Bonding on Collisional Ionization. J Phys Chem A 2004. [DOI: 10.1021/jp0379695] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Ryo Maruyama
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Koichi Ohno
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
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Abdoul-Carime H, Cecchini S, Sanche L. Alteration of protein structure induced by low-energy (<18 eV) electrons. I. The peptide and disulfide bridges. Radiat Res 2002; 158:23-31. [PMID: 12071800 DOI: 10.1667/0033-7587(2002)158[0023:aopsib]2.0.co;2] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
We present measurements of low-energy (<18 eV) electron-stimulated desorption of anions from acetamide (CH(3)CONH(2)) and dimethyl disulfide [DMDS: (CH(3)S)(2)] films. Electron irradiation of physisorbed CH(3)CONH(2) produces H(-), CH(3)(-) and O(-) anions, whereas the H(-), CH(2)(-), CH(3)(-), S(-), SH(-) and SCH(3)(-) anions are observed to desorb from the DMDS film. Below 12 eV, the dependence of the anion yields on the incident electron energy exhibits structures that indicate that a resonant process (i.e. dissociative electron attachment) is responsible for molecular fragmentation. Within the range of 1-18 eV, it is found that (1.7 and 1.4) x 10(7) H(-) ions/incident electron and (7.8 x 10(-11) and 4.3 x 10(-8)) of the other ions/incident electron are desorbed from acetamide and DMDS films, respectively. These results suggest that, within proteins, the disulfide bond is more sensitive to low-energy electron attack than the peptide bond. In biological cells, some proteins interact closely with nucleic acid. Therefore, the observed fragments, when produced from secondary low-energy electrons generated by high-energy radiation, not only may denature proteins, but may also induce reactions with the nearby nucleic acid and damage DNA.
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Affiliation(s)
- H Abdoul-Carime
- Group of the Canadian Institutes of Health Research in the Radiation Sciences, Faculté de Médecine, Université de Sherbrooke, Sherbrooke, Québec, Canada, J1H 5N4
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Tian SX, Kishimoto N, Ohno K. Two-Dimensional Penning Ionization Electron Spectroscopy of Adamantanes and Cyclohexanes: Electronic Structure of Adamantane, 1-Chloroadamantane, Cyclohexane, and Chlorocyclohexane and Interaction Potential with He*(23S). J Phys Chem A 2002. [DOI: 10.1021/jp014302e] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Shan Xi Tian
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Naoki Kishimoto
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Koichi Ohno
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
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Kishimoto N, Ohno K. Collision Energy Resolved Penning Ionization Electron Spectroscopy of Azines: Anisotropic Interaction of Azines with He*(23S) Atoms and Assignments of Ionic States. J Phys Chem A 2000. [DOI: 10.1021/jp000973l] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Naoki Kishimoto
- Department of Chemistry, Graduate School of Science, Tohoku University, Aoba-ku, Sendai 980-8578, Japan
| | - Koichi Ohno
- Department of Chemistry, Graduate School of Science, Tohoku University, Aoba-ku, Sendai 980-8578, Japan
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Kishimoto N, Osada Y, Ohno K. Penning Ionization of (NH2)2CX (X = O, S) with He*(23S) Metastable Atoms. Difference of Anisotropic Interaction around N, O, and S Atoms. J Phys Chem A 2000. [DOI: 10.1021/jp993242y] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Naoki Kishimoto
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Yukio Osada
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
| | - Koichi Ohno
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai 980-8578, Japan
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Pasinszki T, Kishimoto N, Ohno K. Penning Ionization Electron Spectroscopic and Ab Initio Study of the Interaction and Ionization of HNCO and HNCS with He*(23S) Metastable and Li(22S) Ground State Atoms. J Phys Chem A 1999. [DOI: 10.1021/jp992174c] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tibor Pasinszki
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai, 980-8578, Japan
| | - Naoki Kishimoto
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai, 980-8578, Japan
| | - Koichi Ohno
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai, 980-8578, Japan
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Pasinszki T, Kishimoto N, Ogawa T, Ohno K. Penning Ionization of NCCN by Experiment and Theory: A Two-Dimensional Penning Ionization Electron Spectroscopic and Quantum Chemical Study. J Phys Chem A 1999. [DOI: 10.1021/jp991049y] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tibor Pasinszki
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai, 980-8578, Japan
| | - Naoki Kishimoto
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai, 980-8578, Japan
| | - Tetsuji Ogawa
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai, 980-8578, Japan
| | - Koichi Ohno
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai, 980-8578, Japan
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Pasinszki T, Kishimoto N, Ohno K. Two-Dimensional Penning Ionization Electron Spectroscopy of NNO, HCNO, and HNNN: Electronic Structure and the Interaction Potential with He*(23S) Metastable and Li(22S) Ground State Atoms. J Phys Chem A 1999. [DOI: 10.1021/jp991394n] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tibor Pasinszki
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai, 980-8578, Japan
| | - Naoki Kishimoto
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai, 980-8578, Japan
| | - Koichi Ohno
- Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai, 980-8578, Japan
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