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Borocci S, Grandinetti F, Sanna N. Concerning the Role of σ-Hole in Non-Covalent Interactions: Insights from the Study of the Complexes of ArBeO with Simple Ligands. Molecules 2021; 26:molecules26154477. [PMID: 34361629 PMCID: PMC8348141 DOI: 10.3390/molecules26154477] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 07/15/2021] [Accepted: 07/20/2021] [Indexed: 11/23/2022] Open
Abstract
The structure, stability, and bonding character of some exemplary LAr and L-ArBeO (L = He, Ne, Ar, N2, CO, F2, Cl2, ClF, HF, HCl, NH3) were investigated by MP2 and coupled-cluster calculations, and by symmetry-adapted perturbation theory. The nature of the stabilizing interactions was also assayed by the method recently proposed by the authors to classify the chemical bonds in noble-gas compounds. The comparative analysis of the LAr and L-ArBeO unraveled geometric and bonding effects peculiarly related to the σ-hole at the Ar atom of ArBeO, including the major stabilizing/destabilizing role of the electrostatic interactionensuing from the negative/positive molecular electrostatic potential of L at the contact zone with ArBeO. The role of the inductive and dispersive components was also assayed, making it possible to discern the factors governing the transition from the (mainly) dispersive domain of the LAr, to the σ-hole domain of the L-ArBeO. Our conclusions could be valid for various types of non-covalent interactions, especially those involving σ-holes of respectable strength such as those occurring in ArBeO.
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Affiliation(s)
- Stefano Borocci
- Dipartimento per la Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy; (S.B.); (N.S.)
- Istituto per i Sistemi Biologici del CNR, Via Salaria, Km 29.500, 00015 Monterotondo, Italy
| | - Felice Grandinetti
- Dipartimento per la Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy; (S.B.); (N.S.)
- Istituto per i Sistemi Biologici del CNR, Via Salaria, Km 29.500, 00015 Monterotondo, Italy
- Correspondence: ; Tel.: +39-07-6135-7126
| | - Nico Sanna
- Dipartimento per la Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy; (S.B.); (N.S.)
- Istituto per la Scienza e Tecnologia dei Plasmi del CNR (ISTP), Via Amendola 122/D, 70126 Bari, Italy
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Nunzi F, Cesario D, Belpassi L, Tarantelli F, Roncaratti LF, Falcinelli S, Cappelletti D, Pirani F. Insight into the halogen-bond nature of noble gas-chlorine systems by molecular beam scattering experiments, ab initio calculations and charge displacement analysis. Phys Chem Chem Phys 2019; 21:7330-7340. [PMID: 30896694 DOI: 10.1039/c9cp00300b] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We have carried out molecular-beam scattering experiments and high-level ab initio investigations on the potential energy surfaces of a series of noble-gas-Cl2 adducts. This effort has permitted the construction of a simple, reliable and easily generalizable analytical model potential formulation, which is based on a few physically meaningful parameters of the interacting partners and transparently shows the origin, strength, and stereospecificity of the various interaction components. The results demonstrate quantitatively beyond doubt that the interaction between a noble-gas (Ng) atom - even He - and Cl2 in a collinear configuration is characterized by weak halogen bond (XB) formation, accompanied by charge transfer (CT) from the Ng to chlorine. This characteristic, which stabilizes the adduct, rapidly disappears on going towards the T-shaped configuration, dominated by pure van der Waals (vdW) forces. Similarly, a pure vdW interaction takes place - with no CT component in any configuration - if Cl2 is present in the lowest πg* → σu* excited state, because the change in electron density that accompanies the excitation eliminates the Cl2 polar flattening and σ hole, making the XB interaction inaccessible.
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Affiliation(s)
- Francesca Nunzi
- Dipartimento di Chimica, Biologia e Biotecnologie, via Elce di Sotto 8, I-06123 Perugia, Italy.
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Li S, Zheng R, Chen SJ, Chen Y, Chen P. Investigations of the Rg-BrCl (Rg=He, Ne, Ar, Kr, Xe) binary van der Waals complexes: ab initio intermolecular potential energy surfaces, vibrational states and predicted pure rotational transition frequencies. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 174:105-117. [PMID: 27888780 DOI: 10.1016/j.saa.2016.11.020] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2015] [Revised: 11/09/2016] [Accepted: 11/13/2016] [Indexed: 06/06/2023]
Abstract
The intermolecular potential energy surfaces (PESs) of the ground electronic state for the Rg-BrCl (Rg=He, Ne, Ar, Kr, Xe) van der Waals complexes have been constructed by using the coupled-cluster method in combination with the augmented quadruple-zeta correlation-consistent basis sets supplemented with an additional set of bond functions. The features of the anisotropic PESs for these complexes are remarkably similar, which are characterized by three minima and two saddle points between them. The global minimum corresponds to a collinear Rg-Br-Cl configuration. Two local minima, correlate with an anti-linear Rg-Cl-Br geometry and a nearly T-shaped structure, can also be located on each PES. The quantum bound state calculations enable us to investigate intermolecular vibrational states and rotational energy levels of the complexes. The transition frequencies are predicted and are fitted to obtain their corresponding spectroscopic constants. In general, the periodic trends are observed for this complex family. Comparisons with available experimental data for the collinear isomer of Ar-BrCl demonstrate reliability of our theoretical predictions, and our results for the other two isomers of Ar-BrCl as well as for other members of the complex family are also anticipated to be trustable. Except for the collinear isomer of Ar-BrCl, the data presented in this paper would be beneficial to improve our knowledge for these experimentally unknown species.
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Affiliation(s)
- Song Li
- School of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou, People's Republic of China.
| | - Rui Zheng
- School of Mathematics and Information Science, North China University of Water Resources and Electric Power, Zhengzhou, People's Republic of China
| | - Shan-Jun Chen
- School of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou, People's Republic of China
| | - Yan Chen
- School of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou, People's Republic of China
| | - Peng Chen
- School of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou, People's Republic of China
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Bartocci A, Belpassi L, Cappelletti D, Falcinelli S, Grandinetti F, Tarantelli F, Pirani F. Catching the role of anisotropic electronic distribution and charge transfer in halogen bonded complexes of noble gases. J Chem Phys 2015; 142:184304. [DOI: 10.1063/1.4919692] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
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Cappelletti D, Bartocci A, Grandinetti F, Falcinelli S, Belpassi L, Tarantelli F, Pirani F. Experimental Evidence of Chemical Components in the Bonding of Helium and Neon with Neutral Molecules. Chemistry 2015; 21:6234-40. [DOI: 10.1002/chem.201406103] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2014] [Indexed: 11/11/2022]
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Buchachenko A, Halberstadt N, Lepetit B, Roncero O. Ar ··· I 2 : A model system for complex dynamics. INT REV PHYS CHEM 2010. [DOI: 10.1080/0144235031000075726] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Alexei Buchachenko
- a Laboratory of Molecular Structure and Quantum Mechanics, Department of Chemistry , Moscow State University , Moscow , 119992 , Russia
| | - Nadine Halberstadt
- b LPQT-IRSAMC , Université Paul Sabatier and CNRS , 118 route de Narbonne, Toulouse , 31062 , France
| | - Bruno Lepetit
- c LCAR-IRSAMC , Université Paul Sabatier and CNRS , 118 route de Narbonne, Toulouse , 31062 , France
| | - Octavio Roncero
- d Instituto de Matemáticas y Física Fundamental , CSIC , Serrano 123, Madrid , 28006 , Spain
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Bieler CR, Janda KC, Hernández-Lamoneda R, Roncero O. NeCl2 and ArCl2: transition from direct vibrational predissociation to intramolecular vibrational relaxation and electronic nonadiabatic effects. J Phys Chem A 2010; 114:3050-9. [PMID: 19754050 DOI: 10.1021/jp906392m] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Pump-probe results are reported for NeCl(2) excited to the Cl(2) B state, undergoing vibrational predissociation, and then probed via E <-- B transitions. Intensities, lifetimes and product vibrational branching ratios are reported for 16 < or = v' < or = 19 Cl(2) stretching quanta. The intensity of the signal rapidly decreases above v' = 17. Detailed wave packet calculations of the vibrational predissociation dynamics are performed to determine if the experimental results can be explained by the onset of IVR dynamics. The calculations and the experiment are in close accord for low vibrational levels. For higher levels, some, but not all, of the loss of experimental signal can be attributed to IVR. To test whether electronic relaxation dynamics are important for NeCl(2) and ArCl(2), excited state potential surfaces that incorporate spin orbit coupling effects are calculated. These surfaces are then used in a wave packet calculation that includes both vibrational predissociation and electronic predissociation dynamics. The results show that electronic predissociation is important for ArCl(2) levels above v' = 12. For NeCl(2) the calculation suggests that the onset of electronic predissociation should occur for levels as low as v' = 13 but may not contribute markedly to the observed loss of signal above v' = 17. Suggestions are made for further studies of this puzzling problem.
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Affiliation(s)
- Craig R Bieler
- Department of Chemistry, University of California, Irvine, California 92697, USA
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Pio JM, van der Veer WE, Bieler CR, Janda KC. Product state resolved excitation spectroscopy of He–, Ne–, and Ar–Br2 linear isomers: Experiment and theory. J Chem Phys 2008; 128:134311. [DOI: 10.1063/1.2885047] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Garcı́a-Vela A. An empirical potential energy surface for He–Cl2(B 3Πu) based on a multiproperty fit. J Chem Phys 2003. [DOI: 10.1063/1.1599342] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
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KUMAR MUKESH, KUMAR ASHOK, MEATH WILLIAMJ. Dipole oscillator strength properties and dispersion energies for CI2. Mol Phys 2002. [DOI: 10.1080/00268970210162682] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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CUNHA CARLOS, PROSMITI RITA, VILLARREAL PABLO, DELGADO-BARRIO GERARDO. Theoretical prediction of a linear isomer for NeBr2(X1Γg+anab initioapproach. Mol Phys 2002. [DOI: 10.1080/00268970210158669] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Lenzer T, Yourshaw I, Furlanetto MR, Pivonka NL, Neumark DM. Characterization of ArnCl(−) clusters (n=2–15) using zero electron kinetic energy and partially discriminated threshold photodetachment spectroscopy. J Chem Phys 2001. [DOI: 10.1063/1.1388202] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
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Hernández MI, Halberstadt N, Sands WD, Janda KC. Structure and spectroscopy of the He2Cl2 van der Waals cluster. J Chem Phys 2000. [DOI: 10.1063/1.1313786] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
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Hernández MI, González-Lezana T, Delgado-Barrio G, Villarreal P, Buchachenko AA. Theoretical simulations of the He79Br2 B, v=8←X, v″=0 excitation spectrum: Spectroscopic manifestation of a linear isomer? J Chem Phys 2000. [DOI: 10.1063/1.1288793] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
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Buchachenko A, González-Lezana T, Hernández M, de Lara Castells M, Delgado-Barrio G, Villarreal P. Blueshifts of the B←X excitation spectra of He79Br2 using a DIM-based potential. Chem Phys Lett 2000. [DOI: 10.1016/s0009-2614(99)01452-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Boato G, Volpi GG. EXPERIMENTS ON THE DYNAMICS OF MOLECULAR PROCESSES: A Chronicle of Fifty Years. Annu Rev Phys Chem 1999; 50:23-50. [PMID: 15012405 DOI: 10.1146/annurev.physchem.50.1.23] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
[Figure: see text] [Figure: see text] [Figure: see text] [Figure: see text] ▪ Abstract This paper reviews the way in which, in the Italy of the years immediately after World War II, interest in the dynamics of molecular processes was awakened. The narrative begins with the work of a small number of chemists and physicists who, in the initial stage, interacted closely. In the course of the years, their interests diverged and younger people joined the newly formed groups. Even now, after half a century, a common approach can still to be seen regarding how to attack problems and perform experiments. Experimental work is discussed, bringing out the common viewpoint of fields as diverse as mass spectrometry, isotope effects, chemical kinetics, molecular beams, molecule-molecule interactions, molecule-ion interactions, molecule-surface interactions, and plasma chemistry.
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Affiliation(s)
- G Boato
- Dipartimento di Fisica, Università di Genova, Via Dodecaneso 33, 16146 Genova, Italy.
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Williams J, Rohrbacher A, Seong J, Marianayagam N, Janda KC, Burcl R, Szcześniak MM, Chałasiński G, Cybulski SM, Halberstadt N. A three-dimensional potential energy surface for He+Cl2 (B 3Π0u+): Ab initio calculations and a multiproperty fit. J Chem Phys 1999. [DOI: 10.1063/1.479190] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Lenzer T, Yourshaw I, Furlanetto MR, Reiser G, Neumark DM. Zero electron kinetic energy spectroscopy of the ArCl− anion. J Chem Phys 1999. [DOI: 10.1063/1.478923] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
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NAUMKIN FY, McCOURT FRW. Is the Ar—Br2(X1Σ+g) van der Waals complex linear rather than T-shaped? A study in terms ofab initiobased potential energy surfaces. Mol Phys 1999. [DOI: 10.1080/00268979909483047] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Lemes N, Braga J, Belchior J. Classical trajectory study on Ar−Cl2 van der Waals system using a recent potential. Chem Phys 1999. [DOI: 10.1016/s0301-0104(99)00006-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Naumkin FY, McCourt FRW. Ab initio based potential energy surfaces, microwave spectrum, and scattering cross section of the ground state Ne–Cl2 system. J Chem Phys 1998. [DOI: 10.1063/1.476713] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
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Naumkin FY, McCourt FRW. Contributions of the two conformers to the microwave spectrum and scattering cross-section of the He–Cl2 van der Waals system, evaluated from an ab initio potential energy surface. J Chem Phys 1998. [DOI: 10.1063/1.476419] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
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