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Li H, Paolucci C, Schneider WF. Zeolite Adsorption Free Energies from ab Initio Potentials of Mean Force. J Chem Theory Comput 2018; 14:929-938. [PMID: 29232513 DOI: 10.1021/acs.jctc.7b00716] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The ability of metal-exchanged zeolites to chemisorb small gas molecules is key to their performance as heterogeneous catalysts and gas-separating agents. Here, we propose and evaluate an ab initio potential of mean force (PMF) method for computing adsorption free energies of representative small molecules to Cu-exchanged sites in SSZ-13 zeolite. We show that Cu ions are mobilized by adsorbates and, as a result, computed free energies are significantly more negative than those obtained from a conventional harmonic oscillator model. PMF-derived free energies are consistent with available experiment and, in many cases, with a dynamics-based quasi-harmonic analysis (QHA). The PMF approach avoids the artificial partitioning of degrees of freedom intrinsic to the QHA. On the basis of the PMF results, we propose a simple correlation to estimate free energies from computed adsorption energies and gas-phase entropies.
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Affiliation(s)
- Hui Li
- Department of Chemical and Biomolecular Engineering, University of Notre Dame , 182 Fitzpatrick Hall, Notre Dame, Indiana 46556, United States
| | - Christopher Paolucci
- Department of Chemical and Biomolecular Engineering, University of Notre Dame , 182 Fitzpatrick Hall, Notre Dame, Indiana 46556, United States
| | - William F Schneider
- Department of Chemical and Biomolecular Engineering, University of Notre Dame , 182 Fitzpatrick Hall, Notre Dame, Indiana 46556, United States
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2
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Zheng H, Zhao L, Ji J, Yang Q, Huang H, Gao J. Molecular origin of decreased diffusivity with loading for benzene/HY. AIChE J 2016. [DOI: 10.1002/aic.15249] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Huimin Zheng
- State Key Laboratory of Heavy Oil Processing; China University of Petroleum; Beijing 102249 China
| | - Liang Zhao
- State Key Laboratory of Heavy Oil Processing; China University of Petroleum; Beijing 102249 China
| | - Jingjing Ji
- State Key Laboratory of Heavy Oil Processing; China University of Petroleum; Beijing 102249 China
| | - Qing Yang
- State Key Laboratory of Heavy Oil Processing; China University of Petroleum; Beijing 102249 China
| | - Haokai Huang
- State Key Laboratory of Heavy Oil Processing; China University of Petroleum; Beijing 102249 China
| | - Jinsen Gao
- State Key Laboratory of Heavy Oil Processing; China University of Petroleum; Beijing 102249 China
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Verploegh RJ, Nair S, Sholl DS. Temperature and Loading-Dependent Diffusion of Light Hydrocarbons in ZIF-8 as Predicted Through Fully Flexible Molecular Simulations. J Am Chem Soc 2015; 137:15760-71. [DOI: 10.1021/jacs.5b08746] [Citation(s) in RCA: 135] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Ross J. Verploegh
- School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0100, United States
| | - Sankar Nair
- School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0100, United States
| | - David S. Sholl
- School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0100, United States
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Zhai D, Zhao L, Gao J, Xu C. Effect of temperature on the diffusion mechanism of xylene isomers in a FAU zeolite: a molecular dynamics study. Phys Chem Chem Phys 2012; 14:7296-303. [DOI: 10.1039/c2cp40584a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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Kowalczyk P, Gauden PA, Terzyk AP, Furmaniak S. Microscopic model of carbonaceous nanoporous molecular sieves—anomalous transport in molecularly confined spaces. Phys Chem Chem Phys 2010; 12:11351-61. [DOI: 10.1039/b926206g] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- Piotr Kowalczyk
- Applied Physics, RMIT University, GPO Box 2476V, Victoria 3001, Australia.
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Nagumo R, Takaba H, Nakao SI. Application of Free Energy Calculations at an Ultrahigh Temperature for Estimation of Molecular Diffusivities and Permeabilities in Zeolite Nanopores at an Ambient Temperature. J Phys Chem B 2009; 113:13313-21. [DOI: 10.1021/jp905328w] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ryo Nagumo
- Department of Chemical System Engineering, The University of Tokyo, 7-3-1 Hongo Bunkyo-ku, Tokyo 113-8656, Japan, and Department of Chemical Engineering, Tohoku University, 6-6-11-1302 Aoba Aramaki Aoba-ku, Sendai 980-8579, Japan
| | - Hiromitsu Takaba
- Department of Chemical System Engineering, The University of Tokyo, 7-3-1 Hongo Bunkyo-ku, Tokyo 113-8656, Japan, and Department of Chemical Engineering, Tohoku University, 6-6-11-1302 Aoba Aramaki Aoba-ku, Sendai 980-8579, Japan
| | - Shin-ichi Nakao
- Department of Chemical System Engineering, The University of Tokyo, 7-3-1 Hongo Bunkyo-ku, Tokyo 113-8656, Japan, and Department of Chemical Engineering, Tohoku University, 6-6-11-1302 Aoba Aramaki Aoba-ku, Sendai 980-8579, Japan
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Smit B, Maesen TLM. Molecular Simulations of Zeolites: Adsorption, Diffusion, and Shape Selectivity. Chem Rev 2008; 108:4125-84. [DOI: 10.1021/cr8002642] [Citation(s) in RCA: 586] [Impact Index Per Article: 36.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Berend Smit
- Department of Chemical Engineering, University of California, Berkeley, California 94720-1462, Van’t Hoff Institute for Molecular Sciences, University of Amsterdam, Nieuwe Achtergracht 166, 1018 WV Amsterdam, The Netherlands, and Centre Européen de Calcul Atomique et Moléculaire (CECAM), Ecole Normale Supérieure, 46 Allée d’Italie, 69007 Lyon France
| | - Theo L. M. Maesen
- Chevron, Energy Technology Company, 100 Chevron Way, Richmond, California 94802-0627
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Dubbeldam D, Beerdsen E, Vlugt TJH, Smit B. Molecular simulation of loading-dependent diffusion in nanoporous materials using extended dynamically corrected transition state theory. J Chem Phys 2007; 122:224712. [PMID: 15974708 DOI: 10.1063/1.1924548] [Citation(s) in RCA: 130] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
A dynamically corrected transition state theory method is presented that is capable of computing quantitatively the self-diffusivity of adsorbed molecules in confined systems at nonzero loading. This extension to traditional transition state theory is free of additional assumptions and yields a diffusivity identical to that obtained by conventional molecular-dynamics simulations. While molecular-dynamics calculations are limited to relatively fast diffusing molecules, our approach extends the range of accessible time scales significantly beyond currently available methods. We show results for methane, ethane, and propane in LTL- and LTA-type zeolites over a wide range of temperatures and loadings, and demonstrate the extensibility of the method to mixtures.
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Affiliation(s)
- D Dubbeldam
- Van't Hoff Institute for Molecular Sciences, University of Amsterdam, Nieuwe Achtergracht 166, 1018 WV Amsterdam, The Netherlands.
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9
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Dubbeldam D, Snurr RQ. Recent developments in the molecular modeling of diffusion in nanoporous materials. MOLECULAR SIMULATION 2007. [DOI: 10.1080/08927020601156418] [Citation(s) in RCA: 126] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Snyder M, Vlachos D. Rational, Hierarchical Parameterization of Complex Zeolite-guest Molecular Models. MOLECULAR SIMULATION 2004. [DOI: 10.1080/08927020410001717245] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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12
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Turaga SC, Auerbach SM. Calculating free energies for diffusion in tight-fitting zeolite-guest systems: Local normal-mode Monte Carlo. J Chem Phys 2003. [DOI: 10.1063/1.1558033] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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13
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Jeong BH, Hasegawa Y, Sotowa KI, Kusakabe K, Morooka S. Separation of Mixtures of Benzene and n-Alkanes Using an FAU-Type Zeolite Membrane. JOURNAL OF CHEMICAL ENGINEERING OF JAPAN 2002. [DOI: 10.1252/jcej.35.167] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Gener I, Ginestet G, Buntinx G, Brémard C. Sorption of Biphenyl in Nonacidic Faujasitic Y Zeolites: Modeling and Spectroscopic Studies. J Phys Chem B 2000. [DOI: 10.1021/jp993291a] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Isabelle Gener
- Laboratoire de Spectrochimie Infrarouge et Raman UMR-CNRS 8516, Centre d' Etudes et de Recherches Lasers et Applications, Bât. C5 Université des Sciences et Technologies de Lille, 59655 Villeneuve d'Ascq Cedex, France
| | - Gabrielle Ginestet
- Laboratoire de Spectrochimie Infrarouge et Raman UMR-CNRS 8516, Centre d' Etudes et de Recherches Lasers et Applications, Bât. C5 Université des Sciences et Technologies de Lille, 59655 Villeneuve d'Ascq Cedex, France
| | - Guy Buntinx
- Laboratoire de Spectrochimie Infrarouge et Raman UMR-CNRS 8516, Centre d' Etudes et de Recherches Lasers et Applications, Bât. C5 Université des Sciences et Technologies de Lille, 59655 Villeneuve d'Ascq Cedex, France
| | - Claude Brémard
- Laboratoire de Spectrochimie Infrarouge et Raman UMR-CNRS 8516, Centre d' Etudes et de Recherches Lasers et Applications, Bât. C5 Université des Sciences et Technologies de Lille, 59655 Villeneuve d'Ascq Cedex, France
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Vlugt TJH, Dellago C, Smit B. Diffusion of isobutane in silicalite studied by transition path sampling. J Chem Phys 2000. [DOI: 10.1063/1.1318771] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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16
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Jousse F, Vercauteren DP, Auerbach SM. How Does Benzene in NaY Zeolite Couple to the Framework Vibrations? J Phys Chem B 2000. [DOI: 10.1021/jp9942872] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Saravanan C, Auerbach SM. Theory and simulation of cohesive diffusion in nanopores: Transport in subcritical and supercritical regimes. J Chem Phys 1999. [DOI: 10.1063/1.479005] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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18
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Mosell T, Schrimpf G, Brickmann J. Diffusion of Aromatic Molecules in Zeolite NaY. 1. Constrained Reaction Coordinate Dynamics. J Phys Chem B 1997. [DOI: 10.1021/jp9713266] [Citation(s) in RCA: 48] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Thomas Mosell
- Physical Chemistry I and Darmstadt Center for Scientific Computing (DZWR), Darmstadt University of Technology, Petersenstr. 20, D-64287 Darmstadt, Germany
| | - Gerhard Schrimpf
- Physical Chemistry I and Darmstadt Center for Scientific Computing (DZWR), Darmstadt University of Technology, Petersenstr. 20, D-64287 Darmstadt, Germany
| | - Jürgen Brickmann
- Physical Chemistry I and Darmstadt Center for Scientific Computing (DZWR), Darmstadt University of Technology, Petersenstr. 20, D-64287 Darmstadt, Germany
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