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Bogetti X, Saxena S. Integrating Electron Paramagnetic Resonance Spectroscopy and Computational Modeling to Measure Protein Structure and Dynamics. Chempluschem 2024; 89:e202300506. [PMID: 37801003 DOI: 10.1002/cplu.202300506] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 10/05/2023] [Accepted: 10/06/2023] [Indexed: 10/07/2023]
Abstract
Electron paramagnetic resonance (EPR) has become a powerful probe of conformational heterogeneity and dynamics of biomolecules. In this Review, we discuss different computational modeling techniques that enrich the interpretation of EPR measurements of dynamics or distance restraints. A variety of spin labels are surveyed to provide a background for the discussion of modeling tools. Molecular dynamics (MD) simulations of models containing spin labels provide dynamical properties of biomolecules and their labels. These simulations can be used to predict EPR spectra, sample stable conformations and sample rotameric preferences of label sidechains. For molecular motions longer than milliseconds, enhanced sampling strategies and de novo prediction software incorporating or validated by EPR measurements are able to efficiently refine or predict protein conformations, respectively. To sample large-amplitude conformational transition, a coarse-grained or an atomistic weighted ensemble (WE) strategy can be guided with EPR insights. Looking forward, we anticipate an integrative strategy for efficient sampling of alternate conformations by de novo predictions, followed by validations by systematic EPR measurements and MD simulations. Continuous pathways between alternate states can be further sampled by WE-MD including all intermediate states.
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Affiliation(s)
- Xiaowei Bogetti
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, PA, 15260, USA
| | - Sunil Saxena
- Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, PA, 15260, USA
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2
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Probing Small-Angle Molecular Motions with EPR Spectroscopy: Dynamical Transition and Molecular Packing in Disordered Solids. MAGNETOCHEMISTRY 2022. [DOI: 10.3390/magnetochemistry8020019] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Disordered molecular solids present a rather broad class of substances of different origin—amorphous polymers, materials for photonics and optoelectronics, amorphous pharmaceutics, simple molecular glass formers, and others. Frozen biological media in many respects also may be referred to this class. Theoretical description of dynamics and structure of disordered solids still does not exist, and only some phenomenological models can be developed to explain results of particular experiments. Among different experimental approaches, electron paramagnetic resonance (EPR) applied to spin probes and labels also can deliver useful information. EPR allows probing small-angle orientational molecular motions (molecular librations), which intrinsically are inherent to all molecular solids. EPR is employed in its conventional continuous wave (CW) and pulsed—electron spin echo (ESE)—versions. CW EPR spectra are sensitive to dynamical librations of molecules while ESE probes stochastic molecular librations. In this review, different manifestations of small-angle motions in EPR of spin probes and labels are discussed. It is shown that CW-EPR-detected dynamical librations provide information on dynamical transition in these media, similar to that explored with neutron scattering, and ESE-detected stochastic librations allow elucidating some features of nanoscale molecular packing. The possible EPR applications are analyzed for gel-phase lipid bilayers, for biological membranes interacting with proteins, peptides and cryoprotectants, for supercooled ionic liquids (ILs) and supercooled deep eutectic solvents (DESs), for globular proteins and intrinsically disordered proteins (IDPs), and for some other molecular solids.
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Gupta P, Chaudhari K, Freed JH. Microsecond dynamics in proteins by two-dimensional ESR. II. Addressing computational challenges. J Chem Phys 2021; 154:084115. [PMID: 33639766 DOI: 10.1063/5.0042441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Two-dimensional electron-electron double resonance (2D-ELDOR) provides extensive insight into molecular motions. Recent developments permitting experiments at higher frequencies (95 GHz) provide molecular orientational resolution, enabling a clearer description of the nature of the motions. In previous work, we provided simulations for the case of domain motions within proteins that are themselves slowly tumbling in a solution. In order to perform these simulations, it was found that the standard approach of solving the relevant stochastic Liouville equation using the efficient Lanczos algorithm for this case breaks down, so algorithms were employed that rely on the Arnoldi iteration. While they lead to accurate simulations, they are very time-consuming. In this work, we focus on a variant known as the rational Arnoldi algorithm. We show that this can achieve a significant reduction in computation time. The stochastic Liouville matrix, which is of very large dimension, N, is first reduced to a much smaller dimension, m, e.g., from N ∼ O(104) to m ∼ 60, that spans the relevant Krylov subspace from which the spectrum is predicted. This requires the selection of the m frequency shifts to be utilized. A method of adaptive shift choice is introduced to optimize this selection. We also find that these procedures help in optimizing the pruning procedure that greatly reduces the dimension of the initial N dimensional stochastic Liouville matrix in such subsequent computations.
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Affiliation(s)
- Pranav Gupta
- National Biomedical Center for Advanced ESR Technology and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, USA
| | - Kevin Chaudhari
- Department of Computer Science, Cornell University, Ithaca, New York 14853, USA
| | - Jack H Freed
- National Biomedical Center for Advanced ESR Technology and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, USA
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Dzikovski B, Khramtsov VV, Chandrasekaran S, Dunnam C, Shah M, Freed JH. Microsecond Exchange Processes Studied by Two-Dimensional ESR at 95 GHz. J Am Chem Soc 2020; 142:21368-21381. [PMID: 33305945 PMCID: PMC7810061 DOI: 10.1021/jacs.0c09469] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Exchange processes which include conformational change, protonation/deprotonation, and binding equilibria are routinely studied by 2D exchange NMR techniques, where information about the exchange of nuclei between environments with different NMR shifts is obtained from the development of cross-peaks. Whereas 2D NMR enables the real time study of millisecond and slower exchange processes, 2D ESR in the form of 2D-ELDOR (two-dimensional electron-electron double resonance) has the potential for such studies over the nanosecond to microsecond real time scales. Cross-peak development due to chemical exchange has been seen previously for semiquinones in ESR, but this is not possible for most common ESR probes, such as nitroxides, studied at typical ESR frequencies because, unlike NMR, the exchanging states yield ESR signals that are not resolved from each other within their respective line widths. But at 95 GHz, it becomes possible to resolve them in many cases because of the increased g-factor resolution. The 95 GHz instrumental developments occurring at ACERT now enable such studies. We demonstrate these new capabilities in two studies: (A) the protonation/deprotonation process for a pH-sensitive imidazoline spin label in aqueous solution where the exchange rate and the population ratio of the exchanging states are controlled by the concentration and pH of the buffer solution, respectively, and (B) a nitroxide radical partitioning between polar (aqueous) and nonpolar (phospholipid) environments in multilamellar lipid vesicles, where the cross-peak development arises from the exchange of the nitroxide between the two phases. This work represents the first example of the observation and analysis of cross-peaks arising from chemical exchange processes involving nitroxide spin labels.
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Affiliation(s)
- Boris Dzikovski
- Department of Chemistry and Chemical Biology, and ACERT, National Biomedical Center for Advanced Electron Spin Resonance Technology, Cornell University, Ithaca, New York 14853-1301, United States
| | - Valery V Khramtsov
- In Vivo Multifunctional Magnetic Resonance Center, Robert C. Byrd Health Sciences Center, West Virginia University, and Department of Biochemistry, West Virginia University School of Medicine, Morgantown, West Virginia 26506, United States
| | - Siddarth Chandrasekaran
- Department of Chemistry and Chemical Biology, and ACERT, National Biomedical Center for Advanced Electron Spin Resonance Technology, Cornell University, Ithaca, New York 14853-1301, United States
| | - Curt Dunnam
- Department of Chemistry and Chemical Biology, and ACERT, National Biomedical Center for Advanced Electron Spin Resonance Technology, Cornell University, Ithaca, New York 14853-1301, United States
| | - Meera Shah
- Department of Chemistry and Chemical Biology, and ACERT, National Biomedical Center for Advanced Electron Spin Resonance Technology, Cornell University, Ithaca, New York 14853-1301, United States
| | - Jack H Freed
- Department of Chemistry and Chemical Biology, and ACERT, National Biomedical Center for Advanced Electron Spin Resonance Technology, Cornell University, Ithaca, New York 14853-1301, United States
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Gupta P, Liang Z, Freed JH. Microsecond dynamics in proteins by two-dimensional ESR: Predictions. J Chem Phys 2020; 152:214112. [PMID: 32505151 PMCID: PMC7863697 DOI: 10.1063/5.0008094] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Accepted: 04/14/2020] [Indexed: 01/04/2023] Open
Abstract
Two-dimensional electron-electron double resonance (2D-ELDOR) provides extensive insight into molecular motions. Recent developments permitting experiments at higher frequencies (95 GHz) provide molecular orientational resolution, enabling a clearer description of the nature of the motions. In this work, simulations are provided for the example of domain motions within proteins that are themselves slowly tumbling in solution. These show the nature of the exchange cross-peaks that are predicted to develop in real time from such domain motions. However, we find that the existing theoretical methods for computing 2D-ELDOR experiments over a wide motional range begin to fail seriously when applied to very slow motions characteristic of proteins in solution. One reason is the failure to obtain accurate eigenvectors and eigenvalues of the complex symmetric stochastic Liouville matrices describing the experiment when computed by the efficient Lanczos algorithm in the range of very slow motion. Another, perhaps more serious, issue is that these matrices are "non-normal," such that for the very slow motional range even rigorous diagonalization algorithms do not yield the correct eigenvalues and eigenvectors. We have employed algorithms that overcome both these issues and lead to valid 2D-ELDOR predictions even for motions approaching the rigid limit. They are utilized to describe the development of cross-peaks in 2D-ELDOR at 95 GHz for a particular case of domain motion.
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Affiliation(s)
- Pranav Gupta
- Department of Chemistry and Chemical Biology, National Biomedical Center for Advanced ESR Technology, Cornell University, Ithaca, New York 14853, USA
| | - Zhichun Liang
- Department of Chemistry and Chemical Biology, National Biomedical Center for Advanced ESR Technology, Cornell University, Ithaca, New York 14853, USA
| | - Jack H. Freed
- Department of Chemistry and Chemical Biology, National Biomedical Center for Advanced ESR Technology, Cornell University, Ithaca, New York 14853, USA
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Franck JM, Chandrasekaran S, Dzikovski B, Dunnam CR, Freed JH. Focus: Two-dimensional electron-electron double resonance and molecular motions: The challenge of higher frequencies. J Chem Phys 2016; 142:212302. [PMID: 26049420 DOI: 10.1063/1.4917322] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The development, applications, and current challenges of the pulsed ESR technique of two-dimensional Electron-Electron Double Resonance (2D ELDOR) are described. This is a three-pulse technique akin to 2D Exchange Nuclear Magnetic Resonance, but involving electron spins, usually in the form of spin-probes or spin-labels. As a result, it required the extension to much higher frequencies, i.e., microwaves, and much faster time scales, with π/2 pulses in the 2-3 ns range. It has proven very useful for studying molecular dynamics in complex fluids, and spectral results can be explained by fitting theoretical models (also described) that provide a detailed analysis of the molecular dynamics and structure. We discuss concepts that also appear in other forms of 2D spectroscopy but emphasize the unique advantages and difficulties that are intrinsic to ESR. Advantages include the ability to tune the resonance frequency, in order to probe different motional ranges, while challenges include the high ratio of the detection dead time vs. the relaxation times. We review several important 2D ELDOR studies of molecular dynamics. (1) The results from a spin probe dissolved in a liquid crystal are followed throughout the isotropic → nematic → liquid-like smectic → solid-like smectic → crystalline phases as the temperature is reduced and are interpreted in terms of the slowly relaxing local structure model. Here, the labeled molecule is undergoing overall motion in the macroscopically aligned sample, as well as responding to local site fluctuations. (2) Several examples involving model phospholipid membranes are provided, including the dynamic structural characterization of the boundary lipid that coats a transmembrane peptide dimer. Additionally, subtle differences can be elicited for the phospholipid membrane phases: liquid disordered, liquid ordered, and gel, and the subtle effects upon the membrane, of antigen cross-linking of receptors on the surface of plasma membrane, vesicles can be observed. These 2D ELDOR experiments are performed as a function of mixing time, Tm, i.e., the time between the second and third π/2 pulses, which provides a third dimension. In fact, a fourth dimension may be added by varying the ESR frequency/magnetic field combination. Therefore, (3) it is shown how continuous-wave multifrequency ESR studies enable the decomposition of complex dynamics of, e.g., proteins by virtue of their respective time scales. These studies motivate our current efforts that are directed to extend 2D ELDOR to higher frequencies, 95 GHz in particular (from 9 and 17 GHz), in order to enable multi-frequency 2D ELDOR. This required the development of quasi-optical methods for performing the mm-wave experiments, which are summarized. We demonstrate state-of-the-art 95 GHz 2D ELDOR spectroscopy through its ability to resolve the two signals from a spin probe dissolved in both the lipid phase and the coexisting aqueous phase. As current 95 GHz experiments are restricted by limited spectral coverage of the π/2 pulse, as well as the very short T2 relaxation times of the electron spins, we discuss how these limitations are being addressed.
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Affiliation(s)
- John M Franck
- Department of Chemistry and Chemical Biology and National Biomedical Center for Advanced ESR Technology, Cornell University, Ithaca, New York 14853, USA
| | - Siddarth Chandrasekaran
- Department of Chemistry and Chemical Biology and National Biomedical Center for Advanced ESR Technology, Cornell University, Ithaca, New York 14853, USA
| | - Boris Dzikovski
- Department of Chemistry and Chemical Biology and National Biomedical Center for Advanced ESR Technology, Cornell University, Ithaca, New York 14853, USA
| | - Curt R Dunnam
- Department of Chemistry and Chemical Biology and National Biomedical Center for Advanced ESR Technology, Cornell University, Ithaca, New York 14853, USA
| | - Jack H Freed
- Department of Chemistry and Chemical Biology and National Biomedical Center for Advanced ESR Technology, Cornell University, Ithaca, New York 14853, USA
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Möbius K, Lubitz W, Savitsky A. High-field EPR on membrane proteins - crossing the gap to NMR. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2013; 75:1-49. [PMID: 24160760 DOI: 10.1016/j.pnmrs.2013.07.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2013] [Revised: 07/15/2013] [Accepted: 07/15/2013] [Indexed: 06/02/2023]
Abstract
In this review on advanced EPR spectroscopy, which addresses both the EPR and NMR communities, considerable emphasis is put on delineating the complementarity of NMR and EPR concerning the measurement of molecular interactions in large biomolecules. From these interactions, detailed information can be revealed on structure and dynamics of macromolecules embedded in solution- or solid-state environments. New developments in pulsed microwave and sweepable cryomagnet technology as well as ultrafast electronics for signal data handling and processing have pushed to new horizons the limits of EPR spectroscopy and its multifrequency extensions concerning the sensitivity of detection, the selectivity with respect to interactions, and the resolution in frequency and time domains. One of the most important advances has been the extension of EPR to high magnetic fields and microwave frequencies, very much in analogy to what happens in NMR. This is exemplified by referring to ongoing efforts for signal enhancement in both NMR and EPR double-resonance techniques by exploiting dynamic nuclear or electron spin polarization via unpaired electron spins and their electron-nuclear or electron-electron interactions. Signal and resolution enhancements are particularly spectacular for double-resonance techniques such as ENDOR and PELDOR at high magnetic fields. They provide greatly improved orientational selection for disordered samples that approaches single-crystal resolution at canonical g-tensor orientations - even for molecules with small g-anisotropies. Exchange of experience between the EPR and NMR communities allows for handling polarization and resolution improvement strategies in an optimal manner. Consequently, a dramatic improvement of EPR detection sensitivity could be achieved, even for short-lived paramagnetic reaction intermediates. Unique structural and dynamic information is thus revealed that can hardly be obtained by any other analytical techniques. Micromolar quantities of sample molecules have become sufficient to characterize stable and transient reaction intermediates of complex molecular systems - offering highly interesting applications for chemists, biochemists and molecular biologists. In three case studies, representative examples of advanced EPR spectroscopy are reviewed: (I) High-field PELDOR and ENDOR structure determination of cation-anion radical pairs in reaction centers from photosynthetic purple bacteria and cyanobacteria (Photosystem I); (II) High-field ENDOR and ELDOR-detected NMR spectroscopy on the oxygen-evolving complex of Photosystem II; and (III) High-field electron dipolar spectroscopy on nitroxide spin-labelled bacteriorhodopsin for structure-function studies. An extended conclusion with an outlook to further developments and applications is also presented.
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Affiliation(s)
- Klaus Möbius
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany; Department of Physics, Free University Berlin, Arnimallee 14, D-14195 Berlin, Germany.
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8
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Collauto A, Barbon A, Brustolon M. First determination of the spin relaxation properties of a nitronyl nitroxide in solution by electron spin echoes at X-band: a comparison with Tempone. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2012; 223:180-186. [PMID: 22975247 DOI: 10.1016/j.jmr.2012.07.011] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2012] [Revised: 07/12/2012] [Accepted: 07/13/2012] [Indexed: 06/01/2023]
Abstract
We studied by electron spin echo pulse methods the spin relaxation properties of a phenyl nitronyl nitroxide radical (2-phenyl-4,4,5,5-tetramethylimidazoline-1-oxyl 3-oxide, PTIO) at X-band in fluid toluene solution in a wide temperature range, and in a water/glycerol 1:1 mixture near room temperature. The relaxation properties of PTIO have been compared with that of Tempone, as a widely used nitroxide. By a new procedure, based on experimental results on the temperature dependences of the relaxation times T(1) and T(2), and on the approximation of an isotropic brownian rotational diffusion, we separated non-secular, spin rotational and residual terms from the transverse relaxation rate to isolate secular and pseudosecular contributions. By comparing the results for the two radicals we found the differences in the magnetic properties that give rise to slower transverse (T(2)) and longitudinal (T(1)) electron spin relaxation for PTIO in the whole temperature range explored in this work.
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Affiliation(s)
- A Collauto
- Dipartimento di Scienze Chimiche, Università degli Studi di Padova, Via Marzolo 1, I-35131 Padova, Italy
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Wedge CJ, Timco GA, Spielberg ET, George RE, Tuna F, Rigby S, McInnes EJL, Winpenny REP, Blundell SJ, Ardavan A. Chemical engineering of molecular qubits. PHYSICAL REVIEW LETTERS 2012; 108:107204. [PMID: 22463450 DOI: 10.1103/physrevlett.108.107204] [Citation(s) in RCA: 161] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2011] [Indexed: 05/05/2023]
Abstract
We show that the electron spin phase memory time, the most important property of a molecular nanomagnet from the perspective of quantum information processing, can be improved dramatically by chemically engineering the molecular structure to optimize the environment of the spin. We vary systematically each structural component of the class of antiferromagnetic Cr(7)Ni rings to identify the sources of decoherence. The optimal structure exhibits a phase memory time exceeding 15 μs.
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Affiliation(s)
- C J Wedge
- Centre for Advanced Electron Spin Resonance, Clarendon Laboratory, Department of Physics, University of Oxford, OX1 3PU, United Kingdom
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Chiang YW, Costa-Filho AJ, Baird B, Freed JH. 2D-ELDOR study of heterogeneity and domain structure changes in plasma membrane vesicles upon cross-linking of receptors. J Phys Chem B 2011; 115:10462-9. [PMID: 21780815 DOI: 10.1021/jp2016243] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
2D electron-electron double resonance (2D-ELDOR) with the "full Sc-" method of analysis is applied to the study of plasma membrane vesicles. Membrane structural changes upon antigen cross-linking of IgE receptors (IgE-FcεRI) in plasma membrane vesicles (PMVs) isolated from RBL-2H3 mast cells are investigated, for the first time, by means of these 2D-ELDOR techniques. Spectra of 1-palmitoyl-2-(16-doxyl stearoyl) phosphatidylcholine (16-PC) from PMVs before and after this stimulation at several temperatures are reported. The results demonstrate a coexistence of liquid-ordered (L(o)) and liquid-disordered (L(d)) components. We find that upon cross-linking, the membrane environment is remodeled to become more disordered, as shown by a moderate increase in the population of the L(d) component. This change in the relative amount of the L(o) versus L(d) components upon cross-linking is consistent with a model wherein the IgE receptors, which when clustered by antigen to cause cell stimulation, lead to more disordered lipids, and their dynamic and structural properties are slightly altered. This study demonstrates that 2D-ELDOR, analyzed by the full Sc- method, is a powerful approach for capturing the molecular dynamics in biological membranes. This is a particular case showing how 2D-ELDOR can be applied to study physical processes in complex systems that yield subtle changes.
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Affiliation(s)
- Yun-Wei Chiang
- Baker Laboratory of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853-1301, United States
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Savitsky A, Malferrari M, Francia F, Venturoli G, Möbius K. Bacterial Photosynthetic Reaction Centers in Trehalose Glasses: Coupling between Protein Conformational Dynamics and Electron-Transfer Kinetics as Studied by Laser-Flash and High-Field EPR Spectroscopies. J Phys Chem B 2010; 114:12729-43. [DOI: 10.1021/jp105801q] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Anton Savitsky
- Max-Planck-Institut für Bioanorganische Chemie, 45470 Mülheim an der Ruhr, Germany, Laboratorio di Biochimica e Biofisica, Dipartimento di Biologia, Università di Bologna, 40126 Bologna, Italy, Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia, c/o Dipartimento di Fisica, Università di Bologna, 40127 Bologna, Italy, and Fachbereich Physik, Freie Universität Berlin, 14195 Berlin, Germany
| | - Marco Malferrari
- Max-Planck-Institut für Bioanorganische Chemie, 45470 Mülheim an der Ruhr, Germany, Laboratorio di Biochimica e Biofisica, Dipartimento di Biologia, Università di Bologna, 40126 Bologna, Italy, Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia, c/o Dipartimento di Fisica, Università di Bologna, 40127 Bologna, Italy, and Fachbereich Physik, Freie Universität Berlin, 14195 Berlin, Germany
| | - Francesco Francia
- Max-Planck-Institut für Bioanorganische Chemie, 45470 Mülheim an der Ruhr, Germany, Laboratorio di Biochimica e Biofisica, Dipartimento di Biologia, Università di Bologna, 40126 Bologna, Italy, Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia, c/o Dipartimento di Fisica, Università di Bologna, 40127 Bologna, Italy, and Fachbereich Physik, Freie Universität Berlin, 14195 Berlin, Germany
| | - Giovanni Venturoli
- Max-Planck-Institut für Bioanorganische Chemie, 45470 Mülheim an der Ruhr, Germany, Laboratorio di Biochimica e Biofisica, Dipartimento di Biologia, Università di Bologna, 40126 Bologna, Italy, Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia, c/o Dipartimento di Fisica, Università di Bologna, 40127 Bologna, Italy, and Fachbereich Physik, Freie Universität Berlin, 14195 Berlin, Germany
| | - Klaus Möbius
- Max-Planck-Institut für Bioanorganische Chemie, 45470 Mülheim an der Ruhr, Germany, Laboratorio di Biochimica e Biofisica, Dipartimento di Biologia, Università di Bologna, 40126 Bologna, Italy, Consorzio Nazionale Interuniversitario per le Scienze Fisiche della Materia, c/o Dipartimento di Fisica, Università di Bologna, 40127 Bologna, Italy, and Fachbereich Physik, Freie Universität Berlin, 14195 Berlin, Germany
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12
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Savitsky A, Möbius K. High-field EPR. PHOTOSYNTHESIS RESEARCH 2009; 102:311-333. [PMID: 19468856 DOI: 10.1007/s11120-009-9432-4] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2008] [Accepted: 04/29/2009] [Indexed: 05/27/2023]
Abstract
Among the numerous spectroscopic techniques utilized in photosynthesis research, high-field/high-frequency EPR and its pulse extensions ESE, ENDOR, ESEEM, and PELDOR play an important role in the endeavor to understand, on the basis of structure and dynamics data, dominant factors that control specificity and efficiency of light-induced electron- and proton-transfer processes in primary photosynthesis. Short-lived transient intermediates of the photocycle can be characterized by high-field EPR techniques, and detailed structural information can be obtained even from disordered sample preparations. The chapter describes how multifrequency high-field EPR methodology, in conjunction with mutation strategies for site-specific isotope or spin labeling and with the support of modern quantum-chemical computation methods for data interpretation, is capable of providing new insights into the photosynthetic transfer processes. The information obtained is complementary to that of protein crystallography, solid-state NMR and laser spectroscopy.
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Affiliation(s)
- Anton Savitsky
- Department of Physics, Free University Berlin, Arnimallee 14, 14195 Berlin, Germany
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Bagryanskaya EG, Polovyanenko DN, Fedin MV, Kulik L, Schnegg A, Savitsky A, Möbius K, Coleman AW, Ananchenko GS, Ripmeester JA. Multifrequency EPR study of the mobility of nitroxides in solid-state calixarene nanocapsules. Phys Chem Chem Phys 2009; 11:6700-7. [DOI: 10.1039/b906827a] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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High-Field/High-Frequency Electron Paramagnetic Resonance Involving Single- and Multiple-Transition Schemes. BIOPHYSICAL TECHNIQUES IN PHOTOSYNTHESIS 2008. [DOI: 10.1007/978-1-4020-8250-4_14] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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15
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Chiang YW, Costa-Filho A, Freed JH. 2D-ELDOR using full S(c-) fitting and absorption lineshapes. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2007; 188:231-45. [PMID: 17681478 DOI: 10.1016/j.jmr.2007.06.014] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2007] [Revised: 05/30/2007] [Accepted: 06/06/2007] [Indexed: 05/16/2023]
Abstract
Recent progress in developing 2D-ELDOR (2D electron-electron double resonance) techniques to better capture molecular dynamics in complex fluids, particularly in model and biological membranes, is reported. The new "full S(c-) method", which corrects the spectral analysis for the phase distortion effects present in the experiments, is demonstrated to enhance the sensitivity of 2D-ELDOR in reporting on molecular dynamics in complex membrane environments. That is, instead of performing spectral fitting in the magnitude mode, our new method enables simultaneous fitting of both the real and imaginary components of the S(c-) signal. The full S(c-) fitting not only corrects the phase distortions in the experimental data but also more accurately determines instrumental dead times. The phase corrections applied to the S(c-) spectrum enable the extraction of the pure absorption-mode spectrum, which is characterized by much better resolution than the magnitude-mode spectrum. In the absorption mode, the variation of homogeneous broadening, which reports on the dynamics of the spin probe, can even be observed by visual inspection. This new method is illustrated with results from model membranes of dipalmitoyl-sn-glycero-phosphatidylcholine (DPPC)-cholesterol binary mixtures, as well as with results from plasma membrane vesicles of mast cells. In addition to the dynamic parameters, which provide quantitative descriptions for membranes at the molecular level, the high-resolution absorption spectra themselves may be used as a "fingerprint" to characterize membrane phases and distinguish coexisting components in biomembranes. Thus we find that 2D-ELDOR is greatly improved with the new "full S(c-) method" especially for exploring the complexity of model and biological membranes.
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Affiliation(s)
- Yun-Wei Chiang
- Baker Laboratory of Chemistry and Chemical Biology, National Biomedical ACERT Center for Advanced ESR Technology, Cornell University, Ithaca, NY 14853-1301, USA
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Chiang YW, Costa-Filho AJ, Freed JH. Dynamic molecular structure and phase diagram of DPPC-cholesterol binary mixtures: a 2D-ELDOR study. J Phys Chem B 2007; 111:11260-70. [PMID: 17760438 DOI: 10.1021/jp0732110] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This paper is an application of 2D electron-electron double resonance (2D-ELDOR) with the "full Sc- method" to study model membranes. We obtain and confirm the phase diagram of 1,2-dipalmitoyl-sn-glycerophosphatidylcholine (DPPC)-cholesterol binary mixtures versus temperature and provide quantitative descriptions for its dynamic molecular structure using 2D-ELDOR at the Ku band. The spectra from the end-chain 16-PC spin label in multilamellar phospholipid vesicles are obtained for cholesterol molar concentrations ranging from 0 to 50% and from 25 to 60 degrees C. This phase diagram consists of liquid-ordered, liquid-disordered, and gel phases and phase coexistence regions. The phase diagram is carefully examined according to the spectroscopic evidence, and the rigorous interpretation for the line shape changes. We show that the 2D-ELDOR spectra differ markedly with variation in the composition. The extensive line shape changes in the 2D-plus-mixing-time representation provide useful information to define and characterize the membrane phases with respect to their dynamic molecular structures and to determine the phase boundaries. The homogeneous T2's are extracted from the pure absorption spectra and are used to further distinguish the membrane phases. These results show 2D-ELDOR to be naturally suitable for probing and reporting the dynamic structures of microdomains in model membrane systems and, moreover, providing a very detailed picture of their molecular dynamic structure, especially with the aid of the "full Sc- method".
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Affiliation(s)
- Yun-Wei Chiang
- Baker Laboratory of Chemistry and Chemical Biology, and National Biomedical ACERT Center for Advanced ESR Technology, Cornell University, Ithaca, New York 14853-1301, USA
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17
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Kirilina EP, Prisner TF, Bennati M, Endeward B, Dzuba SA, Fuchs MR, Möbius K, Schnegg A. Molecular dynamics of nitroxides in glasses as studied by multi-frequency EPR. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2005; 43 Spec no.:S119-29. [PMID: 16235207 DOI: 10.1002/mrc.1677] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Pulsed multi-frequency EPR was used to investigate orientational molecular motion of the nitroxide spin probe (Fremy's salt) in glycerol glass near the glass transition temperature. By measuring echo-detected EPR spectra at different pulse separation times at resonance frequencies of 3, 9.5, 95 and 180 GHz, we were able to discriminate between different relaxation mechanisms and characterize the timescale of molecular reorientations (10(-7)-10(-10) s). We found that near the glass transition temperature, the orientation-dependent transverse relaxation is dominated by fast reorientational fluctuations, which may be overlapped with fast modulations of the canonical g-matrix values. The data was interpreted using a new simulation program for the orientation-dependent transverse relaxation rate 1/T2 of nitroxides based on different models for the molecular motion. The validity of the different models was assessed by comparing least-square fits of the simulated relaxation behaviour to the experimental data.
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Affiliation(s)
- Evgeniya P Kirilina
- Institute of Chemical Kinetics and Combustion, Institutskaya 3, Novosibirsk, 630090, Russia
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Möbius K, Savitsky A, Schnegg A, Plato M, Fuchs M. High-field EPR spectroscopy applied to biological systems: characterization of molecular switches for electron and ion transfer. Phys Chem Chem Phys 2005; 7:19-42. [DOI: 10.1039/b412180e] [Citation(s) in RCA: 87] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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19
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Erilov DA, Bartucci R, Guzzi R, Marsh D, Dzuba SA, Sportelli L. Librational motion of spin-labeled lipids in high-cholesterol containing membranes from echo-detected EPR spectra. Biophys J 2004; 87:3873-81. [PMID: 15377533 PMCID: PMC1304898 DOI: 10.1529/biophysj.104.046631] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2004] [Accepted: 08/19/2004] [Indexed: 12/22/2022] Open
Abstract
Two-pulse, echo-detected (ED) electron paramagnetic resonance (EPR) spectroscopy was used to study the librational motions of spin-labeled lipids in membranes of dipalmitoylphosphatidylcholine + 50 mol % cholesterol. The temperature dependence, over the range 77-240 K, and the dependence on position of spin-labeling in the sn-2 chain (n=5, 7, 10, 12, and 14) of the phospholipid, were characterized in detail. The experimental ED-spectra were corrected for instantaneous spin diffusion arising from static spin-spin interactions, by using spectra recorded at 77 K, where motional contributions are negligible. Simulations according to a model of rapid, small-amplitude librations about an axis whose direction is randomly distributed are able to describe the experimental spectra. Calibrations, in terms of the amplitude-correlation time product, alpha2tauc, were constructed for diagnostic spectral line-height ratios at different echo delay times, and for relaxation spectra obtained from the ratio of ED-spectra recorded at two different echo delays. The librational amplitude, alpha2, was determined for a spin label at the 14-C position of the lipid chain from the partially motionally averaged hyperfine splitting in the conventional EPR spectra. The librational correlation time, tauc, which is deduced from combination of the conventional and ED-EPR results, lies in the subnanosecond regime and depends only weakly on temperature. The temperature dependence of the ED-EPR spectra arises mainly from an increase in librational amplitude with increasing temperature, and position down the lipid chain. A gradual transition takes place at higher temperatures, from a situation in which segmental torsional librations are cumulative, i.e., the contributions of the individual segments add up progressively upon going down the chain, to one of concerted motion only weakly dependent on chain position. Such librational motions are important for glass-like states and are generally relevant to high lipid packing densities, e.g., in cholesterol-containing raft domains and condensed complexes.
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Affiliation(s)
- Denis A Erilov
- Dipartimento di Fisica and Unità Instituto Nazionale per la Fisica della Materia, Università della Calabria, Arcavacata di Rende (CS), Italy
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Erilov DA, Bartucci R, Guzzi R, Marsh D, Dzuba SA, Sportelli L. Echo-Detected Electron Paramagnetic Resonance Spectra of Spin-Labeled Lipids in Membrane Model Systems. J Phys Chem B 2004. [DOI: 10.1021/jp037249y] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Denis A. Erilov
- Dipartimento di Fisica and Unità INFM, Università della Calabria, I-87036 Arcavacata di Rende (CS), Italy, Abteilung Spektroskopie, Max-Planck-Institut fur biophysikalische Chemie, 37077 Gottingen, Germany, and Institute of Chemical Kinetics and Combustion, Russian Academy of Science, 630090 Novosibirsk, Russian Federation
| | - Rosa Bartucci
- Dipartimento di Fisica and Unità INFM, Università della Calabria, I-87036 Arcavacata di Rende (CS), Italy, Abteilung Spektroskopie, Max-Planck-Institut fur biophysikalische Chemie, 37077 Gottingen, Germany, and Institute of Chemical Kinetics and Combustion, Russian Academy of Science, 630090 Novosibirsk, Russian Federation
| | - Rita Guzzi
- Dipartimento di Fisica and Unità INFM, Università della Calabria, I-87036 Arcavacata di Rende (CS), Italy, Abteilung Spektroskopie, Max-Planck-Institut fur biophysikalische Chemie, 37077 Gottingen, Germany, and Institute of Chemical Kinetics and Combustion, Russian Academy of Science, 630090 Novosibirsk, Russian Federation
| | - Derek Marsh
- Dipartimento di Fisica and Unità INFM, Università della Calabria, I-87036 Arcavacata di Rende (CS), Italy, Abteilung Spektroskopie, Max-Planck-Institut fur biophysikalische Chemie, 37077 Gottingen, Germany, and Institute of Chemical Kinetics and Combustion, Russian Academy of Science, 630090 Novosibirsk, Russian Federation
| | - Sergei A. Dzuba
- Dipartimento di Fisica and Unità INFM, Università della Calabria, I-87036 Arcavacata di Rende (CS), Italy, Abteilung Spektroskopie, Max-Planck-Institut fur biophysikalische Chemie, 37077 Gottingen, Germany, and Institute of Chemical Kinetics and Combustion, Russian Academy of Science, 630090 Novosibirsk, Russian Federation
| | - Luigi Sportelli
- Dipartimento di Fisica and Unità INFM, Università della Calabria, I-87036 Arcavacata di Rende (CS), Italy, Abteilung Spektroskopie, Max-Planck-Institut fur biophysikalische Chemie, 37077 Gottingen, Germany, and Institute of Chemical Kinetics and Combustion, Russian Academy of Science, 630090 Novosibirsk, Russian Federation
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21
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Bonora M, Pornsuwan S, Saxena S. Nitroxide Spin−Relaxation over the Entire Motional Range. J Phys Chem B 2004. [DOI: 10.1021/jp0365864] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Marco Bonora
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260
| | - Soraya Pornsuwan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260
| | - Sunil Saxena
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260
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22
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Leporini D, Schädler V, Wiesner U, Spiess HW, Jeschke G. Electron spin relaxation due to small-angle motion: Theory for the canonical orientations and application to hierarchic cage dynamics in ionomers. J Chem Phys 2003. [DOI: 10.1063/1.1623479] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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24
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Harbridge JR, Eaton SS, Eaton GR. Comparison of electron spin relaxation times measured by Carr-Purcell-Meiboom-Gill and two-pulse spin-echo sequences. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2003; 164:44-53. [PMID: 12932454 DOI: 10.1016/s1090-7807(03)00182-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Electron spin relaxation times obtained by two-pulse spin-echo and Carr-Purcell-Meiboom-Gill (CPMG) experiments were compared for samples with: (i) low concentrations of nuclear spins, (ii) higher concentrations of nuclear spins and low concentrations of unpaired electrons, (iii) higher concentrations of nuclear spins and of electron spins, and (iv) dynamic averaging of inequivalent hyperfine couplings on the EPR timescale. In each case, the CPMG time constant decreased as the time between the refocusing pulses increased. For the samples with low concentrations of nuclear spins (the E' center in irradiated amorphous SiO2) the limiting value of the CPMG time constant at short interpulse spacings was similar to the Tm obtained by two-pulse spin echo at small turning angle. For the other samples, the time constants obtained by CPMG at short interpulse spacings were systematically longer than Tm obtained by two-pulse spin echo. For most of the samples, the CPMG time constant decreased with increasing electron spin concentration, which is consistent with the expectation that the CPMG sequence does not refocus dephasing due to electron-electron dipolar interaction between resonant spins. Dynamic processes that average inequivalent hyperfine couplings contributed less to the CPMG time constant than to the spin-echo decay time constant. The impact of nuclear echo envelope modulation on CPMG time constants also was examined. For a Nycomed trityl radical in glassy D2O:glycerol-d8 solution, the CPMG time constant was up to 20 times longer when the time between pulses was approximately equal to integer multiples of the reciprocal of the deuterium Larmor frequency than when the time between pulses was an odd multiple of half the reciprocal of the deuterium Larmor frequency.
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Affiliation(s)
- James R Harbridge
- Department of Chemistry and Biochemistry, University of Denver, Denver, CO 80208-2436, USA
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Bartucci R, Guzzi R, Marsh D, Sportelli L. Chain dynamics in the low-temperature phases of lipid membranes by electron spin-echo spectroscopy. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2003; 162:371-379. [PMID: 12810022 DOI: 10.1016/s1090-7807(03)00049-1] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Spin-echo decays of spin-labelled phospholipids have been recorded to study the chain dynamics in the low-temperature phases of dipalmitoyl phosphatidylcholine membranes with and without 50 mol% cholesterol. The phase-memory relaxation time, T(2M), depends on the position of spin-labelling in the sn-2 chain, and on the presence of cholesterol. A biphasic temperature dependence of T(2M) is obtained over the range 150-270 K. Echo-detected field-swept absorption EPR spectra were recorded as a function of the echo delay time, tau. The echo-detected EPR lineshapes show a strong dependence on tau, revealing anisotropic phase relaxation arising from torsional chain motions. Cholesterol has a large effect on torsional oscillations about the chain long axis. Small-amplitude chain motions in the low-temperature phases may be important for cryopreservation of membranes.
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Affiliation(s)
- Rosa Bartucci
- Dipartimento di Fisica, Università della Calabria, I-87036 Arcavacata di Rende (CS), Italy.
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26
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Kulik LV, Grigor'ev IA, Salnikov ES, Dzuba SA, Tsvetkov YD. Electron Spin−Echo Envelope Modulation Induced by Slow Intramolecular Motion. J Phys Chem A 2003. [DOI: 10.1021/jp027764g] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Leonid V. Kulik
- Institute of Chemical Kinetics and Combustion, Russian Academy of Sciences, Institutskaya-3, 630090 Novosibirsk, Russia, Novosibirsk Institute of Organic Chemistry, Russian Academy of Sciences, Lavrentyev Avenue 9, 630090 Novosibirsk, Russia, and Novosibirsk State University, Pirogova-2, 630090 Novosibirsk, Russia
| | - Igor A. Grigor'ev
- Institute of Chemical Kinetics and Combustion, Russian Academy of Sciences, Institutskaya-3, 630090 Novosibirsk, Russia, Novosibirsk Institute of Organic Chemistry, Russian Academy of Sciences, Lavrentyev Avenue 9, 630090 Novosibirsk, Russia, and Novosibirsk State University, Pirogova-2, 630090 Novosibirsk, Russia
| | - Evgenii S. Salnikov
- Institute of Chemical Kinetics and Combustion, Russian Academy of Sciences, Institutskaya-3, 630090 Novosibirsk, Russia, Novosibirsk Institute of Organic Chemistry, Russian Academy of Sciences, Lavrentyev Avenue 9, 630090 Novosibirsk, Russia, and Novosibirsk State University, Pirogova-2, 630090 Novosibirsk, Russia
| | - Sergei A. Dzuba
- Institute of Chemical Kinetics and Combustion, Russian Academy of Sciences, Institutskaya-3, 630090 Novosibirsk, Russia, Novosibirsk Institute of Organic Chemistry, Russian Academy of Sciences, Lavrentyev Avenue 9, 630090 Novosibirsk, Russia, and Novosibirsk State University, Pirogova-2, 630090 Novosibirsk, Russia
| | - Yuri D. Tsvetkov
- Institute of Chemical Kinetics and Combustion, Russian Academy of Sciences, Institutskaya-3, 630090 Novosibirsk, Russia, Novosibirsk Institute of Organic Chemistry, Russian Academy of Sciences, Lavrentyev Avenue 9, 630090 Novosibirsk, Russia, and Novosibirsk State University, Pirogova-2, 630090 Novosibirsk, Russia
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Costa-Filho AJ, Shimoyama Y, Freed JH. A 2D-ELDOR study of the liquid ordered phase in multilamellar vesicle membranes. Biophys J 2003; 84:2619-33. [PMID: 12668470 PMCID: PMC1302828 DOI: 10.1016/s0006-3495(03)75067-x] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
Abstract
2D-ELDOR spectroscopy has been employed to study the dynamic structure of the liquid-ordered (Lo) phase versus that of the liquid-crystalline (Lc) phase in multibilayer phospholipid vesicles without (Lc) and with (Lo) cholesterol, using end-chain and headgroup labels and spin-labeled cholestane. The spectra are in most cases found to be dramatically different for these two phases. Thus, visual inspection of the 2D-ELDOR spectra provides a convenient way to distinguish the two phases in membranes. Detailed analysis shows these observations are due to increased ordering in the Lo phase and modified reorientation rates. In the Lo phase, acyl chains undergo a faster rotational diffusion and higher ordering than in the Lc phase, whereas spin-labeled cholestane exhibits slower rotational diffusion and higher ordering. On the other hand, the choline headgroup in the Lo phase exhibits faster motion and reduced but realigned ordering versus the Lc phase. The microscopic translational diffusion rates in the Lo phase are significantly reduced in the presence of cholesterol. These results are compared with previous studies, and a consistent model is provided for interpreting them in terms of the differences in the dynamic structure of the Lo and Lc phases.
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Affiliation(s)
- Antonio J Costa-Filho
- Department of Chemistry and Chemical Biology, and National Biomedical Center for Advanced ESR Technology, Cornell University, Ithaca, New York 14853-1301 USA
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Schnegg A, Fuhs M, Rohrer M, Lubitz W, Prisner TF, Möbius K. Molecular Dynamics of QA-• and QB-• in Photosynthetic Bacterial Reaction Centers Studied by Pulsed High-Field EPR at 95 GHz. J Phys Chem B 2002. [DOI: 10.1021/jp0203907] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- A. Schnegg
- Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany, Institut für Physikalische und Theoretische Chemie, Johann Wolfgang Goethe Universität, Marie Curie Strasse 11, 60439 Frankfurt, Germany, and Max-Planck-Institut für Strahlenchemie, 45470 Mülheim an der Ruhr, Germany
| | - M. Fuhs
- Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany, Institut für Physikalische und Theoretische Chemie, Johann Wolfgang Goethe Universität, Marie Curie Strasse 11, 60439 Frankfurt, Germany, and Max-Planck-Institut für Strahlenchemie, 45470 Mülheim an der Ruhr, Germany
| | - M. Rohrer
- Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany, Institut für Physikalische und Theoretische Chemie, Johann Wolfgang Goethe Universität, Marie Curie Strasse 11, 60439 Frankfurt, Germany, and Max-Planck-Institut für Strahlenchemie, 45470 Mülheim an der Ruhr, Germany
| | - W. Lubitz
- Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany, Institut für Physikalische und Theoretische Chemie, Johann Wolfgang Goethe Universität, Marie Curie Strasse 11, 60439 Frankfurt, Germany, and Max-Planck-Institut für Strahlenchemie, 45470 Mülheim an der Ruhr, Germany
| | - T. F. Prisner
- Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany, Institut für Physikalische und Theoretische Chemie, Johann Wolfgang Goethe Universität, Marie Curie Strasse 11, 60439 Frankfurt, Germany, and Max-Planck-Institut für Strahlenchemie, 45470 Mülheim an der Ruhr, Germany
| | - K. Möbius
- Fachbereich Physik, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany, Institut für Physikalische und Theoretische Chemie, Johann Wolfgang Goethe Universität, Marie Curie Strasse 11, 60439 Frankfurt, Germany, and Max-Planck-Institut für Strahlenchemie, 45470 Mülheim an der Ruhr, Germany
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Eaton SS, Eaton GR. Relaxation Times of Organic Radicals and Transition Metal Ions. DISTANCE MEASUREMENTS IN BIOLOGICAL SYSTEMS BY EPR 2002. [DOI: 10.1007/0-306-47109-4_2] [Citation(s) in RCA: 95] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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30
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Double-Quantum ESR and Distance Measurements. DISTANCE MEASUREMENTS IN BIOLOGICAL SYSTEMS BY EPR 2002. [DOI: 10.1007/0-306-47109-4_9] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Abstract
New electron spin resonance (ESR) technologies have been developed, which have led to new and improved applications. (a) The development of two-dimensional Fourier transform (FT) ESR required spectrometers providing intense pi/2 microwave pulses of very short (3-5 ns) duration, wide bandwidths, and very short dead times. It has enabled studies that resolve sophisticated details of molecular dynamics in complex fluids. (b) Methods that produce multiple quantum coherences by pulsed ESR now enable accurate measurements of large distances (>12A). (c) One of the most important advances has been the extension of ESR to high magnetic fields and high frequencies. This has benefited from the utilization of quasi-optical methods, especially above 150 GHz. The greatly improved orientational resolution and the faster "snapshot" of motions that are provided by ESR at high frequencies enhance studies of molecular dynamics. The use of both high and lower frequencies enables one to unravel faster and slower modes from the complex dynamics of fluids and macromolecules. (d) The development of FT-ESR imaging required substantial pulsed field gradients lasting only 50-100 ns. ESR imaging is effective in studying diffusion in fluids. Areas for further development are also described.
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Affiliation(s)
- J H Freed
- Baker Laboratory of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, USA.
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