Chemical Bonding in XeF2, XeF4, KrF2, KrF4, RnF2, XeCl2, and XeBr2: From the Gas Phase to the Solid State

The inert pair effect on heavy noble gases: insights from radon tetroxide

A quantum chemical survey of radon and xenon tetroxides (NgO₄, Ng = Xe, Rn) is reported herein. The intermediate species, which are formed in their explosive decomposition back to their elemental states (Ng and O₂), were also studied and their energetics were compared. While T_d symmetric RnO₄ has a minimum energy structure, its standard enthalpy of formation is 88.6 kJ mol^-1 higher than for XeO₄. The reason for this higher instability lies in what is known as the inert pair effect. This work establishes that the high-valent chemical trends of the sixth period of groups 13-15 are indeed extended to group 18.

Prediction of stable radon fluoride molecules and geometry optimization using first-principles calculations

Noble gases possess extremely low reactivity because their valence shells are closed. However, previous studies have suggested that these gases can form molecules when they combine with other elements with high electron affinity, such as fluorine. Radon is a naturally occurring radioactive noble gas, and the formation of radon-fluorine molecules is of significant interest owing to its potential application in future technologies that address environmental radioactivity. Nevertheless, because all isotopes of radon are radioactive and the longest radon half-life is only 3.82 days, experiments on radon chemistry have been limited. Here, we study the formation of radon molecules using first-principles calculations; additionally, possible compositions of radon fluorides are predicted using a crystal structure prediction approach. Similar to xenon fluorides, di-, tetra-, and hexafluorides are found to be stabilized. Coupled-cluster calculations reveal that RnF₆ stabilizes with O_h point symmetry, unlike XeF₆ with C_3v symmetry. Moreover, we provide the vibrational spectra of our predicted radon fluorides as a reference. The molecular stability of radon di-, tetra-, and hexafluoride obtained through calculations may lead to advances in radon chemistry.

Synthesis, spectroscopy, crystal structure, TGA/DTA study, DFT and molecular docking investigations of (E)-4-(4-methylbenzyl)-6-styrylpyridazin-3(2H)-one

In this study, we present the synthesis of novel pyridazin-3(2H)-one derivative namely (E)-4-(4-methylbenzyl)-6-styrylpyridazin-3(2H)-one (MBSP). The chemical structure of MBSP was characterized using spectroscopic techniques such as FT-IR, 1H NMR, 13C NMR, UV-Vis, ESI-MS, and finally, the structure was confirmed by single X-ray diffraction studies. The DFT calculation was performed to compare the gas-phase geometry of the title compound to the solid-phase structure of the title compound. Furthermore, a comparative study between theoretical UV-Vis, IR, 1H- and 13C NMR spectra of the studied compound and experimental ones have been carried out. The thermal behavior and stability of the compound were analyzed by using TGA and DTA techniques which revealed that the compound is thermostable up to its melting point. Finally, the in silico docking and ADME studies are performed to investigate whether MBSP is a potential therapeutic for COVID-19.

Synthesis, crystal structure, DFT calculations and Hirshfeld surface analysis of 2-(1-decyl-2-oxo-indolin-3-yl-idene)propanedi-nitrile

In the title mol-ecule, C21H25N3O, the 1-decyl substituents are in an extended conformation and inter-calate in the crystal packing to form hydro-phobic bands. The packing is further organized by π-π-stacking inter-actions between pyrrole and phenyl rings [centroid-centroid distance = 3.6178 (11) Å] and a C=O⋯π(pyrrole) inter-action [3.447 (2) Å]. Hirshfeld surface analysis indicates that the H⋯N/N⋯H inter-actions make the highest contribution (17.4%) to the crystal packing.

A systematic study of the effects of thionation in naphthalene dimide derivatives to tune their nonlinear optical properties

In the present study, the number and position of sulfur atoms on naphthalene diimide (NDI) is systematically investigated to tune its nonlinear optical (NLO) response properties. Our DFT calculations for third-order polarizability (γ) show that the thionation significantly influences the nonlinear optical property of NDI as it is seen among its several designed derivatives (NDI-1 to NDI-10). The smallest and the largest γ_zzzz amplitudes are 503.49 × 10^-36 and 1299.5 × 10^-36 esu for NDI-1 (having tetraone group) and NDI-10 (having tetrathione group), respectively. The increase in γ_zzzz amplitude for NDI-10 is 796 × 10^-36 esu, which is ∼150% from the γ_zzzz amplitude of NDI-1. A comparison of the γ_zzzz amplitudes of our designed derivatives are made with para-nitroaniline i.e. a prototype NLO molecule. The γ_zzzz amplitude of pNA is found to be 42.64 × 10^-36 esu at the same B3LYP/DZVP2 level of theory. Using two-level model, the origin of larger γ_zzzz amplitudes is traced in lower transition energy of NDI-10. Furthermore, the calculation of vertical ionization potentials (VIPs) shows that the thionation does not affect the stability of designed derivatives, where a slight difference of 0.06 eV is seen between the VIPs of NDI-1 (6.63 eV) and NDI-10 (6.57 eV). Thus, a systematic comparison of the third-order polarizability and other electro-optical properties of our designed derivatives shows that our derivative systems possess good potential for their practical realization in the field of optical and NLO materials.

Inner-shell photoionization and core-hole decay of Xe and XeF2

Photoionization cross sections and partial ion yields of Xe and XeF2 from Xe 3d(5/2), Xe 3d(3/2), and F 1s subshells in the 660-740 eV range are compared to explore effects of the F ligands. The Xe 3d-ϵf continuum shape resonances dominate the photoionization cross sections of both the atom and molecule, but prominent resonances appear in the XeF2 cross section due to nominal excitation of Xe 3d and F 1s electrons to the lowest unoccupied molecular orbital (LUMO), a delocalized anti-bonding MO. Comparisons of the ion products from the atom and molecule following Xe 3d photoionization show that the charge-state distribution of Xe ions is shifted to lower charge states in the molecule along with production of energetic F(+) and F(2+) ions. This suggests that, in decay of a Xe 3d core hole, charge is redistributed to the F ligands and the system dissociates due to Coulomb repulsion. The ion products from excitation of the F 1s-LUMO resonance are different and show strong increases in the yields of Xe(+) and F(+) ions. The subshell ionization thresholds, the LUMO resonance energies, and their oscillator strengths are calculated by relativistic coupled-cluster methods and agree well with measurements.

Theoretical prediction of XRgCO(+) ions (X = F, Cl, and Rg = Ar, Kr, Xe)

In this work we have predicted novel rare gas containing cationic molecules, XRgCO(+) (X = F, Cl and Rg = Ar, Kr, Xe) using ab initio quantum chemical methods. Detail structural, stability, vibrational frequency, and charge distribution values are reported using density functional theory, second-order Møller-Plesset perturbation theory, and coupled-cluster theory based methods. These ions are found to be metastable in nature and exhibit a linear geometry with C∞v symmetry in their minima energy structures, and the nonlinear transition state geometries are associated with Cs symmetry. Except for the two-body dissociation channel (Rg + XCO(+)), these ions are stable with respect to all other dissociation channels. However, the connecting transition states between the above-mentioned two-body dissociation channel products and the predicted ions are associated with sufficient energy barriers, which restricts the metastable species to transform into the global minimum products. Thus, it may be possible to detect and characterize these metastable ions using an electron bombardment technique under cryogenic conditions.

Caesium in high oxidation states and as a p-block element

The periodicity of the elements and the non-reactivity of the inner-shell electrons are two related principles of chemistry, rooted in the atomic shell structure. Within compounds, Group I elements, for example, invariably assume the +1 oxidation state, and their chemical properties differ completely from those of the p-block elements. These general rules govern our understanding of chemical structures and reactions. Here, first-principles calculations show that, under pressure, caesium atoms can share their 5p electrons to become formally oxidized beyond the +1 state. In the presence of fluorine and under pressure, the formation of CsF(n) (n > 1) compounds containing neutral or ionic molecules is predicted. Their geometry and bonding resemble that of isoelectronic XeF(n) molecules, showing a caesium atom that behaves chemically like a p-block element under these conditions. The calculated stability of the CsF(n) compounds shows that the inner-shell electrons can become the main components of chemical bonds.

Basis set effects in simple compounds of heavy rare gases

Rare-gas hydrides of the type HRgX (Rg = Xe or Rn and X = F, Cl, Br, or I) have been studied using Møller–Plesset and density functional theory methods. Six model core potentials and their associated basis sets were used, with relativistic effects included implicitly. The effects of polarization, correlating, and diffuse basis functions were investigated. Molecular geometries of the metastable hydrides and transition states along the decomposition pathway were computed together with corresponding energies of formation and decomposition. The results of quantum theory of atoms in molecules analysis further elucidate the interactions between atoms in HRgX species and confirm the results of analyses obtained from the natural bond orbitals approach.

A comparison of diamino- and diamidocarbenes toward dimerization

In this study, we compare the dimerization of N,N'-diamidocarbene with that of N-heterocyclic carbene (NHC). Less interaction occurred between the filled lone pair of nitrogen and the unfilled lone pair of the carbenic center for a N,N'-diamdiocarbene than did in a saturated NHC because of the resonance between the lone pair of nitrogen and a carbonyl group. Therefore, a N,N'-diamidocarbene exhibits less singlet-triplet splitting. The less singlet-triplet splitting in a heterocyclic carbene containing nitrogen, the more exothermic the dimerization, which is consistent with the conclusion of Thiel et al. (Chem Phys Lett 217:11-16, 1994).

Theoretical prediction of new noble-gas molecules FNgBNR (Ng = Ar, Kr, and Xe; R = H, CH3, CCH, CHCH2, F, and OH)

We have computationally predicted a new class of stable noble-gas molecules FNgBNR (Ng = Ar, Kr, Xe; R = H, CH3, CCH, CHCH2, F, and OH). The FNgBNR were found to have compact structures with F-Ng bond lengths of 1.9-2.2 Å and Ng-B bond lengths of ~1.8 Å. The endoergic three-body dissociation energies of FNgBNH to F + Ng + BNH were calculated to be 12.8, 31.7, and 63.9 kcal mol(-1), for Ng = Ar, Kr, and Xe, respectively at the CCSD(T)/CBS level. The energy barriers of the exoergic two-body dissociation to Ng + FBNH were calculated to be 16.1, 24.0, and 33.2 kcal mol(-1) for Ng = Ar, Kr, and Xe, respectively. Our results showed that the dissociation energetics is relatively insensitive to the identities of the terminal R groups. The current study suggested that a wide variety of noble-gas containing molecules with different types of R groups can be thermally stable at low temperature, and the number of potentially stable noble-gas containing molecules would thus increase very significantly. It is expected some of the FNgBNR molecules could be identified in future experiments under cryogenic conditions in noble-gas matrices or in the gas phase.

Freezing in resonance structures for better packing: XeF2 becomes (XeF+)(F-) at large compression

Recent high-pressure experiments conducted on xenon difluoride (XeF(2)) suggested that this compound undergoes several phase transitions up to 100 GPa, becoming metallic above 70 GPa. In this theoretical study, in contrast to experiment, we find that the ambient pressure molecular structure of xenon difluoride, of I4/mmm symmetry, remains the most stable one up to 105 GPa. In our computations, the structures suggested from experiment have either much higher enthalpies than the I4/mmm structure or converge to that structure upon geometry optimization. We discuss these discrepancies between experiment and calculation and point to an alternative interpretation of the measured cell vectors of XeF(2) at high pressure. At pressures exceeding those studied experimentally, above 105 GPa, the I4/mmm structure transforms to one of Pnma symmetry. The Pnma phase contains bent FXeF molecules, with unequal Xe-F distances, and begins to bring other fluorines into the coordination sphere of the Xe. Further compression of this structure up to 200 GPa essentially results in self-dissociation of XeF(2) into an ionic solid (i.e., [XeF](+)F(-)), similar to what is observed for nitrous oxide (N(2)O) at high pressure.

Molecular single-bond covalent radii for elements 1-118

A self-consistent system of additive covalent radii, R(AB)=r(A) + r(B), is set up for the entire periodic table, Groups 1-18, Z=1-118. The primary bond lengths, R, are taken from experimental or theoretical data corresponding to chosen group valencies. All r(E) values are obtained from the same fit. Both E-E, E-H, and E-CH(3) data are incorporated for most elements, E. Many E-E' data inside the same group are included. For the late main groups, the system is close to that of Pauling. For other elements it is close to the methyl-based one of Suresh and Koga [J. Phys. Chem. A 2001, 105, 5940] and its predecessors. For the diatomic alkalis MM' and halides XX', separate fits give a very high accuracy. These primary data are then absorbed with the rest. The most notable exclusion are the transition-metal halides and chalcogenides which are regarded as partial multiple bonds. Other anomalies include H(2) and F(2). The standard deviation for the 410 included data points is 2.8 pm.

Chemical Bonding in Octahedral XeF6 and SF6

Quantum chemical density functional theory calculations have been carried out for octahedral XeF6 and SF6 at the BP86/TZ2P level with relativistic effects included by the ZORA approximation. The energy decomposition analysis of XeF6 and SF6 using neutral and charged fragments EF5 + F and EF5+ + F− as well as E + F6 and E6+ + F66− indicates that the dominant E–F orbital interactions take place between σ-orbitals which have t1u symmetry in the octahedral point group. The contribution of the a1g orbitals is negligible in the 16 valence electron compound XeF6. The a1g contribution becomes larger in the 14 valence electron species SF6 but it is less important than the t1u term. The bonding between the neutral species comes mainly from covalent (orbital) interactions but the quasiclassical electrostatic attraction significantly contributes to the attractive interactions. The bonding which comes from the ΔEorb term is compensated by the Pauli repulsion ΔEPauli. The sum of ΔEorb and ΔEPauli is repulsive for XeF6 and SF6, which would not be stable molecules without quasiclassical electrostatic attraction.

Electron-rich three-center bonding: role of s,p interactions across the p-block

This paper analyzes the importance of s,p mixing-a necessary addition to the simplest Rundle-Pimentel picture-and periodic and group trends in electron-rich three-center bonding. Our analysis proceeds through a detailed quantum chemical study of the stability of electron-rich three-center bonding in triatomic 22-valence electron anions. To provide interpretations, a perturbational molecular orbital (MO) analysis of s,p mixing is carried out. This analysis of the orbitals and the overlap populations is then tested by density functional calculations for a number of linear trihalides, trichalcogenides, and tripnictides. The most important effect of s,p mixing on the in-line bonding is in destabilization of the 3sigma(g) orbital and is determined by the overlap between the s orbital of the central atom and the p orbital of the terminal atom. Further destabilization arises from the repulsion of p(pi) lone pairs. Both of these antibonding effects increase with increasing negative charge of the system. The stability of isoelectronic X(3) systems thus decreases when moving from right to left in the periodic table. Interesting group trends are discerned; for instance, for the electron-rich tripnictides, the ability to accommodate a hypervalent electron count is the largest in the middle rather at the end of the group. Particularly strong s,p mixing can reverse the bonding/antibonding character of MOs: thus MO 2sigma(u) that is responsible for bonding for trihalides and trichalcogenides is actually antibonding in N(3)(7)(-).