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Vícha J, Straka M, Munzarová ML, Marek R. Mechanism of Spin–Orbit Effects on the Ligand NMR Chemical Shift in Transition-Metal Complexes: Linking NMR to EPR. J Chem Theory Comput 2014; 10:1489-99. [DOI: 10.1021/ct400726y] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Jan Vícha
- CEITEC
- Central European Institute of Technology, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic
- National
Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic
| | - Michal Straka
- CEITEC
- Central European Institute of Technology, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic
- Institute of Organic Chemistry and Biochemistry of the ASCR, Flemingovo nám. 2, CZ-16610 Praha, Czech Republic
| | - Markéta L. Munzarová
- CEITEC
- Central European Institute of Technology, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic
- Department
of Chemistry, Faculty of Science, Masaryk University, Kamenice
5, CZ-62500 Brno, Czech Republic
| | - Radek Marek
- CEITEC
- Central European Institute of Technology, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic
- National
Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czech Republic
- Department
of Chemistry, Faculty of Science, Masaryk University, Kamenice
5, CZ-62500 Brno, Czech Republic
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2
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Hedegård ED, Kongsted J, Sauer SPA. Optimized Basis Sets for Calculation of Electron Paramagnetic Resonance Hyperfine Coupling Constants: aug-cc-pVTZ-J for the 3d Atoms Sc-Zn. J Chem Theory Comput 2011; 7:4077-87. [PMID: 26598353 DOI: 10.1021/ct200587k] [Citation(s) in RCA: 68] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The hyperfine coupling tensor of electron paramagnetic resonance (EPR), describing the interaction between an electron and a given nuclei, depends strongly on the electron density at the nucleus. With standard Gaussian-type orbital basis sets (GTOs), employed in most calculations, it is difficult to obtain converged results of the hyperfine coupling tensor, and basis sets with more flexible core regions have therefore been devised. To this class of core property basis sets belong the aug-cc-pVTZ-J basis sets developed for the s- and p-block atoms. Here, we extend the aug-cc-pVTZ-J basis sets to include the 3d elements Sc-Zn. The converged optimal basis sets are throughout the series described by a (25s17p10d3f2g)/[17s10p7d3f2g] contraction scheme, where four tight s-, one tight p-, and one tight d-type function have been added to the original aug-cc-pVTZ basis sets. The basis sets are generally contracted, and molecular orbital coefficients are used as contraction coefficients. By validation studies with different functionals and compounds, it is shown that the values of the contraction coefficient are effectively independent of the compound used in their generation and the exchange-correlation functional employed in the calculation.
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Affiliation(s)
- Erik Donovan Hedegård
- Department of Chemistry and Physics, University of Southern Denmark , Odense, Denmark
| | - Jacob Kongsted
- Department of Chemistry and Physics, University of Southern Denmark , Odense, Denmark
| | - Stephan P A Sauer
- Department of Chemistry, University of Copenhagen , Copenhagen, Denmark
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3
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Ziegler T, Autschbach J. Theoretical methods of potential use for studies of inorganic reaction mechanisms. Chem Rev 2005; 105:2695-722. [PMID: 15941226 DOI: 10.1021/cr0307188] [Citation(s) in RCA: 328] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Tom Ziegler
- Department of Chemistry, University of Calgary, Canada.
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4
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Stevens F, Van Speybroeck V, Pauwels E, Vrielinck H, Callens F, Waroquier M. Level of theory study of magnetic resonance parameters of chalcogen XY−(X, Y = O, S and Se) defects in alkali halides. Phys Chem Chem Phys 2005; 7:240-9. [DOI: 10.1039/b412408a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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5
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Freysoldt C, Pöppl A, Reinhold J. Influence of Coligands on the EPR Hyperfine Coupling Constants of the Cu(I)−NO System − A Theoretical Study. J Phys Chem A 2004. [DOI: 10.1021/jp0363388] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Christoph Freysoldt
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, and Institut für Experimentelle Physik II, Universität Leipzig, D-04103 Leipzig, Germany
| | - Andreas Pöppl
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, and Institut für Experimentelle Physik II, Universität Leipzig, D-04103 Leipzig, Germany
| | - Joachim Reinhold
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, and Institut für Experimentelle Physik II, Universität Leipzig, D-04103 Leipzig, Germany
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6
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Arbuznikov AV, Vaara J, Kaupp M. Relativistic spin-orbit effects on hyperfine coupling tensors by density-functional theory. J Chem Phys 2004; 120:2127-39. [PMID: 15268351 DOI: 10.1063/1.1636720] [Citation(s) in RCA: 80] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
A second-order perturbation theory treatment of spin-orbit corrections to hyperfine coupling tensors has been implemented within a density-functional framework. The method uses the all-electron atomic mean-field approximation and/or spin-orbit pseudopotentials in incorporating one- and two-electron spin-orbit interaction within a first-principles framework. Validation of the approach on a set of main-group radicals and transition metal complexes indicates good agreement between all-electron and pseudopotential results for hyperfine coupling constants of the lighter nuclei in the system, except for cases in which scalar relativistic effects become important. The nonrelativistic Fermi contact part of the isotropic hyperfine coupling constants is not always accurately reproduced by the exchange-correlation functionals employed, particularly for the triplet and pi-type doublet radicals in the present work. For this reason, ab initio coupled-cluster singles and doubles with perturbative triples results for the first-order contributions have been combined in the validation calculations with the density-functional results for the second-order spin-orbit contributions. In the cases where spin-orbit corrections are of significant magnitude relative to the nonrelativistic first-order terms, they improve the agreement with experiment. Antisymmetric contributions to the hyperfine tensor arise from the spin-orbit contributions and are discussed for the IO2 radical, whereas rovibrational effects have been evaluated for RhC, NBr, and NI.
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Affiliation(s)
- Alexei V Arbuznikov
- Institut fur Anorganische Chemie, Universitat Wurzburg, Am Hubland, D-97074 Wurzburg, Germany.
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Hsieh CH, Hsu IJ, Lee CM, Ke SC, Wang TY, Lee GH, Wang Y, Chen JM, Lee JF, Liaw WF. Nickel complexes of o-amidochalcogenophenolate(2-)/o-iminochalcogenobenzosemiquinonate(1-) pi-radical: synthesis, structures, electron spin resonance, and x-ray absorption spectroscopic evidence. Inorg Chem 2003; 42:3925-33. [PMID: 12793831 DOI: 10.1021/ic034211r] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The preparation of complexes trans-[Ni(-SeC(6)H(4)-o-NH-)(2)](-) (1), cis-[Ni(-TeC(6)H(4)-o-NH-)(2)](-) (2), trans-[Ni(-SC(6)H(4)-o-NH-)(2)](-) (3), and [Ni(-SC(6)H(4)-o-S-)(2)](-) (4) by oxidative addition of 2-aminophenyl dichalcogenides to anionic [Ni(CO)(SePh)(3)](-) proves to be a successful approach in this direction. The cis arrangement of the two tellurium atoms in complex 2 is attributed to the intramolecular Te.Te contact interaction (Te.Te contact distance of 3.455 A). The UV-vis electronic spectra of complexes 1 and 2 exhibit an intense absorption at 936 and 942 nm, respectively, with extinction coefficient epsilon > 10000 L mol(-)(1) cm(-)(1). The observed small g anisotropy, the principal g values at g(1) = 2.036, g(2) = 2.062, and g(3) = 2.120 for 1 and g(1) = 2.021, g(2) = 2.119, and g(3) = 2.250 for 2, respectively, indicates the ligand radical character accompanied by the contribution of the singly occupied d orbital of Ni(III). The X-ray absorption spectra of all four complexes show L(III) peaks at approximately 854.5 and approximately 853.5 eV. This may indicate a variation of contribution of the Ni(II)-Ni(III) valence state. According to the DFT calculation, the unpaired electron of complex 1 and 2 is mainly distributed on the 3d(xz)() orbital of the nickel ion and on the 4p(z)() orbital of selenium (tellurium, 5p(z)()) as well as the 2p(z)() orbital of nitrogen of the ligand. On the basis of X-ray structural data, UV-vis absorption, electron spin resonance, magnetic properties, DFT computation, and X-ray absorption (K- and L-edge) spectroscopy, the monoanionic trans-[Ni(-SeC(6)H(4)-o-NH-)(2)](-) and cis-[Ni(-TeC(6)H(4)-o-NH-)(2)](-) complexes are appositely described as a resonance hybrid form of Ni(III)-bis(o-amidochalcogenophenolato(2-)) and Ni(II)-(o-amidochalcogenophenolato(2-))-(o-iminochalcogenobenzosemiquinonato(1-) pi-radical; i.e., complexes 1 and 2 contain delocalized oxidation levels of the nickel ion and ligands.
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Affiliation(s)
- Chung-Hung Hsieh
- Department of Chemistry, National Tsing Hua University, Hsinchu 30043, Taiwan
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8
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Saladino AC, Larsen SC. Density Functional Theory Calculations of Nitrogen Hyperfine and Quadrupole Coupling Constants in Oxovanadium(IV) Complexes. J Phys Chem A 2003. [DOI: 10.1021/jp030051t] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Sarah C. Larsen
- Department of Chemistry, University of Iowa, Iowa City, Iowa 52242
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Neese F. Metal and ligand hyperfine couplings in transition metal complexes: The effect of spin–orbit coupling as studied by coupled perturbed Kohn–Sham theory. J Chem Phys 2003. [DOI: 10.1063/1.1540619] [Citation(s) in RCA: 335] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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10
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Stadler C, de Lacey AL, Hernández B, Fernández VM, Conesa JC. Density functional calculations for modeling the oxidized states of the active site of nickel-iron hydrogenases. 1. Verification of the method with paramagnetic Ni and Co complexes. Inorg Chem 2002; 41:4417-23. [PMID: 12184758 DOI: 10.1021/ic020015t] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
ZORA relativistic DFT calculations are presented which aim to reproduce geometric structures and EPR properties of [Ni(mnt)(2)](-) (H(2)mnt = maleonitrildithiol), two other paramagnetic low-spin Ni(III) complexes, and an asymmetric paramagnetic Co(II) complex. The study tests the accuracy of the computational method as a prior step to the modeling of the geometric and electronic structure of the active site of NiFe hydrogenases in its EPR-active oxidized states Ni-A and Ni-B. Systematic deviations from experiment are found for the calculated g-values; relative differences among them are, however, well reproduced. Because no significant improvements have been achieved by using larger basis sets or more sophisticated functionals, g-values may be calculated rather rapidly at the VWN level. This is most important for the modeling of the active site of NiFe hydrogenases because its complexity does not permit calculations at high levels of theory. For [Ni(mnt)(2)](-), excellent agreement between calculated and experimental results is obtained for the (14)N quadrupole coupling, whereas the calculated hyperfine couplings are not always in good agreement with experimental data.
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Affiliation(s)
- Christian Stadler
- Instituto de Catálisis y Petroleoquímica, CSIC, Campus Universidad Autónoma, 28049 Madrid, Spain
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11
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Neese F. Prediction of electron paramagnetic resonance g values using coupled perturbed Hartree–Fock and Kohn–Sham theory. J Chem Phys 2001. [DOI: 10.1063/1.1419058] [Citation(s) in RCA: 504] [Impact Index Per Article: 21.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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12
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Stoll ME, Belanzoni P, Calhorda MJ, Drew MG, Félix V, Geiger WE, Gamelas CA, Gonçalves IS, Romão CC, Veiros LF. Stepwise hapticity changes in sequential one-electron redox reactions of indenyl-molybdenum complexes: combined electrochemical, ESR, X-ray, and theoretical studies. J Am Chem Soc 2001; 123:10595-606. [PMID: 11673991 DOI: 10.1021/ja0109951] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Reduction of the dication [(eta5-Ind)(Cp)Mo[P(OMe)3]2]2+ (1(2+)) and oxidation of the neutral complex (eta3-Ind)(Cp)Mo[P(OMe)3]2 (1) proceed through a one-electron intermediate, 1+. The structures of 1(2+) and 1 have been determined by X-ray diffraction studies, which show the slip-fold distortion angle, Omega, of the indenyl ring increasing from 4.1 degrees in 1(2+) to 21.7 degrees in 1. Cyclic voltammetry and bulk electrolysis were employed to define the thermodynamics and heterogeneous charge-transfer kinetics of reactions 1(2+) + e(-) <==> 1+ and 1+ + e(-) <==> 1: DeltaE1/2 = 113 mV in CH3CN and 219 mV in CH2Cl2/0.1 M [NBu4][PF6]; k(s) = 0.4 cm x s(-1) for 1(2+)/1+ couple, 1.0 cm x s(-1) for 1+/1 couple in CH3CN. ESR spectra of 1+ displayed a surprisingly large hyperfine splitting (7.4 x 10(-4) x cm(-1)) from a single 1H nucleus, and spectra of the partially deuterated indenyl analogue confirmed assignment of a(H) to the H2 proton of the indenyl ring. The related eta5 18-electron complexes [(eta5-Ind)(Cp)Mo(dppe)]2+ (2(2+)) (dppe = diphenylphosphinoethane) and (eta5-Ind)(Cp)Mo(CN)2 (3) may also be reduced in two successive one-electron steps; ESR spectra of the radicals 2+ and 3- showed a similarly large a(H2) (8.7 x 10(-4) and 6.4 x 10(-4) x cm(-1), respectively). Molecular orbital calculations (density functional theory, DFT, and extended Hückel, EH) predict metal-indenyl bonding in 1+ that is approximately midway between that of the eta5 and eta3 hapticities (e.g., Omega = 11.4 degrees ). DFT results show that the large value of a(H2) arises from polarization of the indenyl-H2 by both inner-sphere orbitals and the singly occupied molecular orbital (SOMO) of 1+. The measured ks values are consistent with only minor inner-sphere reorganizational energies being necessary for the electron-transfer reactions, showing that a full eta5/eta3 hapticity change may require only small inner-sphere reorganization energies when concomitant with a pair of stepwise one-electron-transfer processes. The indenyl ligand in 1+ is best described as donating approximately four pi-electrons to Mo by combining a traditional eta3 linkage with two "half-strength" Mo-C bonds.
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Affiliation(s)
- M E Stoll
- Department of Chemistry, University of Vermont, Cook Physical Science Building, Burlington, Vermont 05405-0125, USA
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Larsen SC. DFT Calculations of Proton Hyperfine Coupling Constants for [VO(H2O)5]2+: Comparison with Proton ENDOR Data. J Phys Chem A 2001. [DOI: 10.1021/jp0116003] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sarah C. Larsen
- Department of Chemistry, University of Iowa, Iowa City, Iowa 52242
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14
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Neese F. Theoretical Study of Ligand Superhyperfine Structure. Application to Cu(II) Complexes. J Phys Chem A 2001. [DOI: 10.1021/jp003254f] [Citation(s) in RCA: 120] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Frank Neese
- Mathematisch-Naturwissenschaftliche Sektion, Fachbereich Biologie, Universität Konstanz, 78457 Konstanz, Germany
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Belanzoni P, van Lenthe E, Baerends EJ. An evaluation of the density functional approach in the zero order regular approximation for relativistic effects: Magnetic interactions in small metal compounds. J Chem Phys 2001. [DOI: 10.1063/1.1345509] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Stein M, van Lenthe E, Baerends EJ, Lubitz W. g- and A-Tensor Calculations in the Zero-Order Approximation for Relativistic Effects of Ni Complexes and Ni(CO)3H as Model Complexes for the Active Center of [NiFe]-Hydrogenase. J Phys Chem A 2000. [DOI: 10.1021/jp002455g] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Matthias Stein
- Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17. Juni 135, D-10623 Berlin, Germany, and Theoretical Chemistry, Vrije Universiteit, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
| | - Erik van Lenthe
- Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17. Juni 135, D-10623 Berlin, Germany, and Theoretical Chemistry, Vrije Universiteit, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
| | - Evert J. Baerends
- Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17. Juni 135, D-10623 Berlin, Germany, and Theoretical Chemistry, Vrije Universiteit, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
| | - Wolfgang Lubitz
- Max-Volmer-Institut für Biophysikalische Chemie und Biochemie, Technische Universität Berlin, Strasse des 17. Juni 135, D-10623 Berlin, Germany, and Theoretical Chemistry, Vrije Universiteit, De Boelelaan 1083, NL-1081 HV Amsterdam, The Netherlands
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Munzarová M, Kaupp M. A Critical Validation of Density Functional and Coupled-Cluster Approaches for the Calculation of EPR Hyperfine Coupling Constants in Transition Metal Complexes. J Phys Chem A 1999. [DOI: 10.1021/jp992303p] [Citation(s) in RCA: 254] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Markéta Munzarová
- Max-Planck-Institut für Festkörperforschung, Heisenbergstrasse 1, D-70569 Stuttgart, Germany
| | - Martin Kaupp
- Max-Planck-Institut für Festkörperforschung, Heisenbergstrasse 1, D-70569 Stuttgart, Germany
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