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Benjamin I. Chemical Reaction Dynamics at Liquid Interfaces: A Computational Approach. PROGRESS IN REACTION KINETICS AND MECHANISM 2019. [DOI: 10.3184/007967402103165360] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Recent advances in experimental and theoretical studies of liquid interfaces provide remarkable evidence for the unique properties of these systems. In this review we examine how these properties affect the thermodynamics and kinetics of chemical reactions which take place at the liquid/vapor interface and at the liquid/liquid interface. We demonstrate how the rapidly varying density and viscosity, the marked changes in polarity and the surface roughness manifest themselves in isomerization, electron transfer and photodissociation reactions.
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Affiliation(s)
- Ilan Benjamin
- Department of Chemistry, University of California, Santa Cruz, California 95064, USA
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Finlayson-Pitts BJ. Introductory lecture: atmospheric chemistry in the Anthropocene. Faraday Discuss 2017; 200:11-58. [DOI: 10.1039/c7fd00161d] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The term “Anthropocene” was coined by Professor Paul Crutzen in 2000 to describe an unprecedented era in which anthropogenic activities are impacting planet Earth on a global scale. Greatly increased emissions into the atmosphere, reflecting the advent of the Industrial Revolution, have caused significant changes in both the lower and upper atmosphere. Atmospheric reactions of the anthropogenic emissions and of those with biogenic compounds have significant impacts on human health, visibility, climate and weather. Two activities that have had particularly large impacts on the troposphere are fossil fuel combustion and agriculture, both associated with a burgeoning population. Emissions are also changing due to alterations in land use. This paper describes some of the tropospheric chemistry associated with the Anthropocene, with emphasis on areas having large uncertainties. These include heterogeneous chemistry such as those of oxides of nitrogen and the neonicotinoid pesticides, reactions at liquid interfaces, organic oxidations and particle formation, the role of sulfur compounds in the Anthropocene and biogenic–anthropogenic interactions. A clear and quantitative understanding of the connections between emissions, reactions, deposition and atmospheric composition is central to developing appropriate cost-effective strategies for minimizing the impacts of anthropogenic activities. The evolving nature of emissions in the Anthropocene places atmospheric chemistry at the fulcrum of determining human health and welfare in the future.
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Richards-Henderson NK, Anderson C, Anastasio C, Finlayson-Pitts BJ. The effect of cations on NO2 production from the photolysis of aqueous thin water films of nitrate salts. Phys Chem Chem Phys 2015; 17:32211-8. [DOI: 10.1039/c5cp05325k] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Cations are shown to enhance nitrate photochemistry by changing the concentrations of nitrate ions in the interface region.
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Affiliation(s)
| | | | - Cort Anastasio
- Department of Land
- Air and Water Resources
- University of California – Davis
- Davis
- USA
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Moussa SG, Stern AC, Raff JD, Dilbeck CW, Tobias DJ, Finlayson-Pitts BJ. Experimental and theoretical studies of the interaction of gas phase nitric acid and water with a self-assembled monolayer. Phys Chem Chem Phys 2013; 15:448-58. [DOI: 10.1039/c2cp42405c] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Chen J, Cui W, Giblin D, Gross ML. New protein footprinting: fast photochemical iodination combined with top-down and bottom-up mass spectrometry. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2012; 23:1306-18. [PMID: 22669760 PMCID: PMC3630512 DOI: 10.1007/s13361-012-0403-1] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2012] [Revised: 04/25/2012] [Accepted: 04/25/2012] [Indexed: 05/02/2023]
Abstract
We report a new approach for the fast photochemical oxidation of proteins (FPOP) whereby iodine species are used as the modifying reagent. We generate the radicals by photolysis of iodobenzoic acid at 248 nm; the putative iodine radical then rapidly modifies the target protein. This iodine-radical labeling is sensitive, tunable, and site-specific, modifying only histidine and tyrosine residues in contrast to OH radicals that modify 14 amino-acid side chains. We iodinated myoglobin (Mb) and apomyoglobin (aMb) in their native states and analyzed the outcome by both top-down and bottom-up proteomic strategies. Top-down sequencing selects a certain level (addition of one I, two I's) of modification and determines the major components produced in the modification reaction, whereas bottom-up reveals details for each modification site. Tyr146 is found to be modified for aMb but less so for Mb. His82, His93, and His97 are at least 10 times more modified for aMb than for Mb, in agreement with NMR studies. For carbonic anhydrase and its apo form, there are no significant differences of the modification extents, indicating their similarity in conformation and providing a control for this approach. For lispro insulin, insulin-EDTA, and insulin complexed with zinc, iodination yields are sensitive to differences in insulin oligomerization state. The iodine radical labeling is a promising addition to protein footprinting methods, offering higher specificity and lower reactivity than ∙OH and SO(4)(-∙), two other radicals already employed in FPOP.
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Affiliation(s)
- Jiawei Chen
- Department of Chemistry, Washington University, One Brookings Drive, St. Louis, MO 63130, USA
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Richards NK, Wingen LM, Callahan KM, Nishino N, Kleinman MT, Tobias DJ, Finlayson-Pitts BJ. Nitrate Ion Photolysis in Thin Water Films in the Presence of Bromide Ions. J Phys Chem A 2011; 115:5810-21. [DOI: 10.1021/jp109560j] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Nicole K. Richards
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
| | - Lisa M. Wingen
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
| | - Karen M. Callahan
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
| | - Noriko Nishino
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
| | - Michael T. Kleinman
- Department of Medicine, University of California, Irvine, California 92697-1825, United States
| | - Douglas J. Tobias
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
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Johnson ML, Benjamin I. Photodissociation of ICN at the Water/Chloroform Interface. J Phys Chem A 2009; 113:7403-11. [DOI: 10.1021/jp900153j] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mindy L. Johnson
- Department of Chemistry and Biochemistry, University of California, Santa Cruz, California 95064
| | - Ilan Benjamin
- Department of Chemistry and Biochemistry, University of California, Santa Cruz, California 95064
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Finlayson-Pitts BJ. Reactions at surfaces in the atmosphere: integration of experiments and theory as necessary (but not necessarily sufficient) for predicting the physical chemistry of aerosols. Phys Chem Chem Phys 2009; 11:7760-79. [DOI: 10.1039/b906540g] [Citation(s) in RCA: 203] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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Zolot AM, Dagdigian PJ, Nesbitt DJ. Quantum-state resolved reactive scattering at the gas-liquid interface: F+squalane (C30H62) dynamics via high-resolution infrared absorption of nascent HF(v,J). J Chem Phys 2008; 129:194705. [DOI: 10.1063/1.2973630] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Yu Y, Ezell MJ, Zelenyuk A, Imre D, Alexander L, Ortega J, Thomas JL, Gogna K, Tobias DJ, D'Anna B, Harmon CW, Johnson SN, Finlayson-Pitts BJ. Nitrate ion photochemistry at interfaces: a new mechanism for oxidation of α-pinene. Phys Chem Chem Phys 2008; 10:3063-71. [DOI: 10.1039/b719495a] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Wingen LM, Moskun AC, Johnson SN, Thomas JL, Roeselová M, Tobias DJ, Kleinman MT, Finlayson-Pitts BJ. Enhanced surface photochemistry in chloride–nitrate ion mixtures. Phys Chem Chem Phys 2008; 10:5668-77. [DOI: 10.1039/b806613b] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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Nissenson P, Knox CJH, Finlayson-Pitts BJ, Phillips LF, Dabdub D. Enhanced photolysis in aerosols: evidence for important surface effects. Phys Chem Chem Phys 2006; 8:4700-10. [PMID: 17047769 DOI: 10.1039/b609219e] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
While there is increasing evidence for unique chemical reactions at interfaces, there are fewer data on photochemistry at liquid-vapor junctions. This paper reports a comparison of the photolysis of molybdenum hexacarbonyl, Mo(CO)(6), in 1-decene either as liquid droplets or in bulk-liquid solutions. Mo(CO)(6) photolysis is faster by at least three orders of magnitude in the aerosols than in bulk-liquids. Two possible sources of this enhancement are considered: (1) increased light intensity due to either Morphology-Dependent Resonances (MDRs) in the spherical aerosol particles and/or to increased pathlengths for light inside the droplet due to refraction, which are termed physical effects in this paper; and (2) interface effects such as an incomplete solvent-cage at the gas-liquid boundary and/or enhanced interfacial concentrations of Mo(CO)(6), which are termed chemical effects. Quantitative calculations of the first possibility were carried out in which the light intensity distribution in the droplets averaged over 215-360 nm was obtained for 1-decene droplets. Calculations show that the average increase in light intensity over the entire droplet is 106%, with an average increase of 51% at the interface. These increases are much smaller than the observed increase in the apparent photolysis rate of droplets compared to the bulk. Thus, chemical effects, i.e., a decreased solvent-cage effect at the interface and/or enhancement in the surface concentration of Mo(CO)(6), are most likely responsible for the dramatic increase in the photolysis rate. Similar calculations were also carried out for broadband (290-600 nm) solar irradiation of water droplets, relevant to atmospheric conditions. These calculations show that, in agreement with previous calculations by Mayer and Madronich [B. Mayer and S. Madronich, Atmos. Chem. Phys., 2004, 4, 2241] MDRs produce only a moderate average intensity enhancement relative to the corresponding bulk-liquid slabs when averaged over a range of wavelengths characteristic of solar radiation at the Earth's surface. However, as in the case of Mo(CO)(6) in 1-decene, chemical effects may play a role in enhanced photochemistry at the aerosol-air interface for airborne particles.
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Affiliation(s)
- Paul Nissenson
- Department of Mechanical and Aerospace Engineering, University of California, Irvine, California 92697-3975, USA
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Winter N, Benjamin I. Photodissociation of ICN at the liquid/vapor interface of water. J Chem Phys 2004; 121:2253-63. [PMID: 15260780 DOI: 10.1063/1.1765093] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The photodissociation of ICN adsorbed at the liquid/vapor interface of water is studied using classical molecular dynamics with nonadiabatic surface hopping. The cage escape, geminate recombination to form ICN and INC and the subsequent vibrational relaxation of these two molecules (on their ground electronic states) is compared with the same process in bulk water and with previous photodissociation studies at liquid interfaces. We find that the reduced surface density and weaker solvent-solute interactions give rise to reduced rate of nonadiabatic transitions and that the probability for cage escape at the interface is significantly enhanced due to the possibility that one or both of the photodissociation fragments desorb into the gas phase. The overall desorption probability varies from 75% to 92% for ICN initially located just below the Gibbs surface (50% bulk density) to ICN located just above the Gibbs surface, respectively. The corresponding geminate recombination probabilities are 18% and 9%, respectively. The vibrational relaxation rate of the recombined ICN is slower than in the bulk by a factor of 2.3.
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Affiliation(s)
- Nicole Winter
- Department of Chemistry, University of California, Santa Cruz 95064, USA
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Abstract
Molecular beam scattering experiments provide a way to disentangle the elementary steps involved in energy transfer and chemical reactions between gases and liquids. After surveying the history and recent progress in this field, we review studies of the kinematics of gas-liquid collisions and proton exchange of HCl, DCl, and HBr with supercooled sulfuric acid and liquid glycerol. These experiments help to clarify the role of the surface region in controlling trapping and interfacial- and bulk-phase reactions.
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Affiliation(s)
- Gilbert M Nathanson
- Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706-1322, USA.
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Vieceli J, Chorny I, Benjamin I. Photodissociation of ICN at the liquid/vapor interface of chloroform. J Chem Phys 2001. [DOI: 10.1063/1.1388196] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
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Furlan A. Comment on “Femtosecond near-infrared laser desorption of multilayer benzene on Pt(111): spatial origin of hyperthermal desorption” [Chem. Phys. Lett. 314 (1999) 389–395]. Chem Phys Lett 2000. [DOI: 10.1016/s0009-2614(00)00345-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Furlan A. Photodissociation of an alkyl nitrite at a liquid surface: flight-time distributions of NO and HNO. Chem Phys Lett 1999. [DOI: 10.1016/s0009-2614(99)00692-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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