1
|
Rovira C. The description of electronic processes inside proteins from Car-Parrinello molecular dynamics: chemical transformations. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2013. [DOI: 10.1002/wcms.1153] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
|
2
|
Goeschen C, Herges R, Richter J, Tokarczyk B, Wirz J. 2-(2,4-Dinitrobenzyl)pyridine (DNBP): A Potential Light-Activated Proton Shuttle. Helv Chim Acta 2009. [DOI: 10.1002/hlca.200900191] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
4
|
Naumov P, Sakurai K, Ishikawa T, Takahashi J, Koshihara SY, Ohashi Y. Intramolecular Nitro-Assisted Proton Transfer in Photoirradiated 2-(2‘,4‘-Dinitrobenzyl)pyridine: Polarized Optical Spectroscopic Study and Electronic Structure Calculations. J Phys Chem A 2005; 109:7264-75. [PMID: 16834092 DOI: 10.1021/jp0520392] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The nitro-assisted proton transfer (NAPT), responsible for the photoactivity of ortho-nitrobenzylpyridines and a model for the nitro-based caged compounds, is studied along with the parent compound 2-(2',4'-dinitrobenzyl)pyridine (DNBP) with polarized optical spectroscopy and theoretical calculations. The transition dipole moments of a DNBP single-crystal identified oriented molecules of the long-lived enamine tautomer (NH), rather than of the aci-nitro tautomer (OH), as carriers of the photoinduced blue coloration. It is clarified that the blue second singlet transition owes to intramolecular charge transfer from the allyl-pyridinium part to the dinitrophenyl fragment of NH. The theoretical modeling of the ground-state potential energy surface showed that while NH and OH can interconvert by means of direct proton transfer, such a process between the initial form CH and either OH and NH would require significant rotation of the aromatic rings. In the ground state, OH is less stable but the kinetically preferred product over NH. Once created, regardless of whether via ground-state or excited-state routes, the aci-nitro group of OH undergoes energetically inexpensive rotation to deliver the proton to the nitrogen acceptor. The "softening" of the energy surface around OH due to its structural flexibility, that is, mediation of the proton transfer by the nitro group, is crucial to overcome the high barrier for a direct proton jump from CH to NH, even in cases of unfavorable donor-acceptor geometry. The very small structural change experienced by the surrounding of a molecule undergoing NAPT is promising for the design of photoactive systems which retain their crystallinity during a prolonged operation.
Collapse
Affiliation(s)
- Pance Naumov
- ICYS, National Institute for Materials Science, 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan.
| | | | | | | | | | | |
Collapse
|
5
|
Kira N, Takahashi T, Ohga Y, Asano T. Evidence for Two Competing Mechanisms in Regeneration of 2-(2,4-Dinitrobenzyl)pyridine from its Enamine Tautomer. CHEM LETT 2004. [DOI: 10.1246/cl.2004.1444] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
|
6
|
Andreev G, Schrader B, Hristozova D, Delchev V, Petrov J, Rademacher P. Vibrational spectra and structure of the photochromic 2-(2′,4′-dinitrobenzyl)pyridine. J Mol Struct 2003. [DOI: 10.1016/s0022-2860(02)00543-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|
7
|
Corval A, Casalegno R, Ziane O, Burrows HD. New Insights on the Photochromism of 2-(2‘,4‘-Dinitrobenzyl)pyridine. J Phys Chem A 2002. [DOI: 10.1021/jp0140825] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- A. Corval
- Laboratoire de Spectrométrie Physique, Université Joseph Fourier-Grenoble, CNRS (UMR 5588), BP 87-38402 Saint Martin d'Hères Cedex, France, Université d'Alger, USTHB, Bab Ezzouar, Alger, Algérie, and Department Química, Universidade de Coimbra, 3004-535 Coimbra, Portugal
| | - R. Casalegno
- Laboratoire de Spectrométrie Physique, Université Joseph Fourier-Grenoble, CNRS (UMR 5588), BP 87-38402 Saint Martin d'Hères Cedex, France, Université d'Alger, USTHB, Bab Ezzouar, Alger, Algérie, and Department Química, Universidade de Coimbra, 3004-535 Coimbra, Portugal
| | - O. Ziane
- Laboratoire de Spectrométrie Physique, Université Joseph Fourier-Grenoble, CNRS (UMR 5588), BP 87-38402 Saint Martin d'Hères Cedex, France, Université d'Alger, USTHB, Bab Ezzouar, Alger, Algérie, and Department Química, Universidade de Coimbra, 3004-535 Coimbra, Portugal
| | - H. D. Burrows
- Laboratoire de Spectrométrie Physique, Université Joseph Fourier-Grenoble, CNRS (UMR 5588), BP 87-38402 Saint Martin d'Hères Cedex, France, Université d'Alger, USTHB, Bab Ezzouar, Alger, Algérie, and Department Química, Universidade de Coimbra, 3004-535 Coimbra, Portugal
| |
Collapse
|
8
|
Aktah D, Frank I. Breaking bonds by mechanical stress: when do electrons decide for the other side? J Am Chem Soc 2002; 124:3402-6. [PMID: 11916426 DOI: 10.1021/ja004010b] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Using first-principles molecular dynamics, we have simulated reactions that can be induced by mechanical stress in a polymer. We have stretched a small piece of poly(ethylene glycol) (PEG) in water at finite temperature. Both the molecule and the solvent were described quantum mechanically on an equal level. The formation of ions was observed, which corresponds to a heterolytic bond cleavage. We were able to monitor the motion of the electrons during the reactions. Our simulations show that the electron transfer and the breaking of the bond occur almost simultaneously and that both processes are initiated by the approach of a solvent molecule toward the destabilized bond.
Collapse
Affiliation(s)
- Daniel Aktah
- Institut für Physikalische Chemie, LMU München, Butenandtstrasse 5-13, Haus E, 81337 Munich, Germany
| | | |
Collapse
|
9
|
Raugei S, Klein ML. Ab Initio Molecular Dynamics Investigation of the Formyl Cation in the Superacid SbF5/HF. J Phys Chem B 2001. [DOI: 10.1021/jp0106855] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Simone Raugei
- Center for Molecular Modeling and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Michael L. Klein
- Center for Molecular Modeling and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| |
Collapse
|