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Li P, Bera S, Kumar-Saxena S, Pecht I, Sheves M, Cahen D, Selzer Y. Electron transport through two interacting channels in Azurin-based solid-state junctions. Proc Natl Acad Sci U S A 2024; 121:e2405156121. [PMID: 39110736 PMCID: PMC11331140 DOI: 10.1073/pnas.2405156121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Accepted: 07/12/2024] [Indexed: 08/21/2024] Open
Abstract
The fundamental question of "what is the transport path of electrons through proteins?" initially introduced while studying long-range electron transfer between localized redox centers in proteins in vivo is also highly relevant to the transport properties of solid-state, dry metal-protein-metal junctions. Here, we report conductance measurements of such junctions, Au-(Azurin monolayer ensemble)-Bismuth (Bi) ones, with well-defined nanopore geometry and ~103 proteins/pore. Our results can be understood as follows. (1) Transport is via two interacting conducting channels, characterized by different spatial and time scales. The slow and spatially localized channel is associated with the Cu center of Azurin and the fast delocalized one with the protein's polypeptide matrix. Transport via the slow channel is by a sequential (noncoherent) process and in the second one by direct, off-resonant tunneling. (2) The two channels are capacitively coupled. Thus, with a change in charge occupation of the weakly coupled (metal center) channel, the broad energy level manifold, responsible for off-resonance tunneling, shifts, relative to the electrodes' Fermi levels. In this process, the off-resonance (fast) channel dominates transport, and the slow (redox) channel, while contributing only negligibly directly, significantly affects transport by intramolecular gating.
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Affiliation(s)
- Ping’an Li
- Department of Chemical Physics, School of Chemistry, Tel Aviv University, Tel Aviv69978, Israel
| | - Sudipta Bera
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, Rehovot76100, Israel
| | - Shailendra Kumar-Saxena
- Department of Physics and Nanotechnology, College of Engineering and Technology, SRM Institute of Science and Technology, Kattankulathur603203, Tamil Nadu, India
| | - Israel Pecht
- Department of Regenerative Biology and Immunology, Weizmann Institute of Science, Rehovot76100, Israel
| | - Mordechai Sheves
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, Rehovot76100, Israel
| | - David Cahen
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, Rehovot76100, Israel
| | - Yoram Selzer
- Department of Chemical Physics, School of Chemistry, Tel Aviv University, Tel Aviv69978, Israel
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2
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McDowell BW, Taber BN, Mills JM, Gervasi CF, Honda M, Nazin GV. Modulation of Carbon Nanotube Electronic Structure by Grain Boundary Defects in RbI on Au(111). J Phys Chem Lett 2024; 15:439-446. [PMID: 38189654 DOI: 10.1021/acs.jpclett.3c02974] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2024]
Abstract
The electronic properties of single-walled carbon nanotubes (SWCNTs) are known to be highly sensitive to environmental effects. Here, we use scanning tunneling microscopy and spectroscopy to investigate the electronic properties of SWCNTs deposited on RbI monolayer films grown on Au(111). We find that grain boundary defects in RbI monolayers cause the appearance of spatially confined localized states in the SWCNTs. Our density functional theory calculations show that grain boundary defects in RbI/Au(111) produce a stabilizing electrostatic potential caused by reduced coordination of iodine atoms at the RbI grain boundary. The presented results may offer insights into the performance of devices involving transport through SWCNTs subjected to external electrostatic disorder.
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Affiliation(s)
- Benjamin W McDowell
- Department of Chemistry and Biochemistry, Materials Science Institute, Oregon Center for Optical, Molecular, and Quantum Science, University of Oregon, 1253 University of Oregon, Eugene, Oregon 97403, United States
| | - Benjamen N Taber
- Department of Chemistry and Biochemistry, Materials Science Institute, Oregon Center for Optical, Molecular, and Quantum Science, University of Oregon, 1253 University of Oregon, Eugene, Oregon 97403, United States
| | - Jon M Mills
- Department of Chemistry and Biochemistry, Materials Science Institute, Oregon Center for Optical, Molecular, and Quantum Science, University of Oregon, 1253 University of Oregon, Eugene, Oregon 97403, United States
| | - Christian F Gervasi
- Department of Chemistry and Biochemistry, Materials Science Institute, Oregon Center for Optical, Molecular, and Quantum Science, University of Oregon, 1253 University of Oregon, Eugene, Oregon 97403, United States
| | - Motoaki Honda
- Department of Chemistry and Biochemistry, Materials Science Institute, Oregon Center for Optical, Molecular, and Quantum Science, University of Oregon, 1253 University of Oregon, Eugene, Oregon 97403, United States
| | - George V Nazin
- Department of Chemistry and Biochemistry, Materials Science Institute, Oregon Center for Optical, Molecular, and Quantum Science, University of Oregon, 1253 University of Oregon, Eugene, Oregon 97403, United States
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Li W, Long R, Hou Z, Tang J, Prezhdo OV. Influence of Encapsulated Water on Luminescence Energy, Line Width, and Lifetime of Carbon Nanotubes: Time Domain Ab Initio Analysis. J Phys Chem Lett 2018; 9:4006-4013. [PMID: 29969269 DOI: 10.1021/acs.jpclett.8b02049] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
In a broad range of applications, carbon nanotubes (CNTs) are in direct contact with a condensed-phase environment that perturbs CNT properties. Experiments show that water molecules encapsulated inside of semiconducting CNTs reduce the electronic energy gap, enhance elastic and inelastic electron-phonon scattering, and shorten the excited-state lifetime. We rationalize the observed effects at the atomistic level using real-time time-dependent density functional theory combined with nonadiabatic molecular dynamics. Encapsulated water makes the nanotube more rigid, suppressing radial breathing modes while enhancing and slightly shifting the optical G-mode. Water screens Coulomb interactions and shifts charge carrier energies and wave functions. The screening, together with distortion of the CNT geometry and lifting of orbital degeneracy, produces a luminescence red shift. Enhanced elastic and inelastic electron-phonon scattering explains line width broadening and shortening of the excited-state lifetime. The influence of water on the CNT properties is similar to that of defects; however, in contrast to defects, water creates no new phonon modes or electronic states in the CNTs. The atomistic understanding of the influence of the condensed-phase environment on CNT optical, electronic, and vibrational properties, and electron-vibrational dynamics guides design of novel CNT-based materials.
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Affiliation(s)
- Wei Li
- College of Science , Hunan Agricultural University , Changsha 410128 , People's Republic of China
- Laboratory of Theoretical and Computational Chemistry, Institute of Theoretical Chemistry , Jilin University , Changchun 130023 , People's Republic of China
| | - Run Long
- College of Chemistry , Key Laboratory of Theoretical & Computational Photochemistry of Ministry of Education, Beijing Normal University , Beijing 100875 , People's Republic of China
| | - Zhufeng Hou
- National Institute for Materials Science (NIMS) , 1-2-1 Sengen , Tsukuba , Ibaraki 305-0047 , Japan
| | - Jianfeng Tang
- College of Science , Hunan Agricultural University , Changsha 410128 , People's Republic of China
| | - Oleg V Prezhdo
- Department of Chemistry , University of Southern California , Los Angeles , California 90089 , United States
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4
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Adamska L, Nazin GV, Doorn SK, Tretiak S. Self-Trapping of Charge Carriers in Semiconducting Carbon Nanotubes: Structural Analysis. J Phys Chem Lett 2015; 6:3873-3879. [PMID: 26722885 DOI: 10.1021/acs.jpclett.5b01729] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The spatial extent of charged electronic states in semiconducting carbon nanotubes with indices (6,5) and (7,6) was evaluated using density functional theory. It was observed that electrons and holes self-trap along the nanotube axis on length scales of about 4 and 8 nm, respectively, which localize cations and anions on comparable length scales. Self-trapping is accompanied by local structural distortions showing periodic bond-length alternation. The average lengthening (shortening) of the bonds for anions (cations) is expected to shift the G-mode frequency to lower (higher) values. The smaller-diameter nanotube has reduced structural relaxation due to higher carbon-carbon bond strain. The reorganization energy due to charge-induced deformations in both nanotubes is found to be in the 30-60 meV range. Our results represent the first theoretical simulation of self-trapping of charge carriers in semiconducting nanotubes, and agree with available experimental data.
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Affiliation(s)
- Lyudmyla Adamska
- Theoretical Division and Center for Nonlinear Studies, Los Alamos National Laboratory , Los Alamos, New Mexico 87545, United States
| | - George V Nazin
- Department of Chemistry and Biochemistry, University of Oregon , 1253 University of Oregon, Eugene, Oregon 97403, United States
| | - Stephen K Doorn
- Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory , Los Alamos, New Mexico 87545, United States
| | - Sergei Tretiak
- Theoretical Division and Center for Nonlinear Studies, Los Alamos National Laboratory , Los Alamos, New Mexico 87545, United States
- Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory , Los Alamos, New Mexico 87545, United States
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González JW, Rosales L, Pacheco M, Ayuela A. Electron confinement induced by diluted hydrogen-like ad-atoms in graphene ribbons. Phys Chem Chem Phys 2015; 17:24707-15. [DOI: 10.1039/c5cp03061g] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
We report the electronic properties of two-dimensional systems, which are patterned with ad-atoms in two separated regions. By applying band-folding procedures we are able to predict the energies and the spatial distribution of those impurity-induced states.
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Affiliation(s)
- J. W. González
- Centro de Física de Materiales (CSIC-UPV/EHU)-Material Physics Center (MPC)
- Donostia International Physics Center (DIPC)
- Departamento de Física de Materiales
- Fac. Químicas UPV/EHU
- San Sebastián
| | - L. Rosales
- Departamento de Física
- Universidad Técnica Federico Santa María
- Valparaíso
- Chile
| | - M. Pacheco
- Departamento de Física
- Universidad Técnica Federico Santa María
- Valparaíso
- Chile
| | - A. Ayuela
- Centro de Física de Materiales (CSIC-UPV/EHU)-Material Physics Center (MPC)
- Donostia International Physics Center (DIPC)
- Departamento de Física de Materiales
- Fac. Químicas UPV/EHU
- San Sebastián
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