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Mechanistic Evaluation of Antimicrobial Lipid Interactions with Tethered Lipid Bilayers by Electrochemical Impedance Spectroscopy. SENSORS 2022; 22:s22103712. [PMID: 35632121 PMCID: PMC9148023 DOI: 10.3390/s22103712] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/16/2022] [Revised: 05/10/2022] [Accepted: 05/10/2022] [Indexed: 01/27/2023]
Abstract
There is extensive interest in developing real-time biosensing strategies to characterize the membrane-disruptive properties of antimicrobial lipids and surfactants. Currently used biosensing strategies mainly focus on tracking membrane morphological changes such as budding and tubule formation, while there is an outstanding need to develop a label-free biosensing strategy to directly evaluate the molecular-level mechanistic details by which antimicrobial lipids and surfactants disrupt lipid membranes. Herein, using electrochemical impedance spectroscopy (EIS), we conducted label-free biosensing measurements to track the real-time interactions between three representative compounds—glycerol monolaurate (GML), lauric acid (LA), and sodium dodecyl sulfate (SDS)—and a tethered bilayer lipid membrane (tBLM) platform. The EIS measurements verified that all three compounds are mainly active above their respective critical micelle concentration (CMC) values, while also revealing that GML induces irreversible membrane damage whereas the membrane-disruptive effects of LA are largely reversible. In addition, SDS micelles caused membrane solubilization, while SDS monomers still caused membrane defect formation, shedding light on how antimicrobial lipids and surfactants can be active in, not only micellar form, but also as monomers in some cases. These findings expand our mechanistic knowledge of how antimicrobial lipids and surfactants disrupt lipid membranes and demonstrate the analytical merits of utilizing the EIS sensing approach to comparatively evaluate membrane-disruptive antimicrobial compounds.
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2
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Why Do Tethered-Bilayer Lipid Membranes Suit for Functional Membrane Protein Reincorporation? APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app11114876] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Membrane proteins (MPs) are essential for cellular functions. Understanding the functions of MPs is crucial as they constitute an important class of drug targets. However, MPs are a challenging class of biomolecules to analyze because they cannot be studied outside their native environment. Their structure, function and activity are highly dependent on the local lipid environment, and these properties are compromised when the protein does not reside in the cell membrane. Mammalian cell membranes are complex and composed of different lipid species. Model membranes have been developed to provide an adequate environment to envisage MP reconstitution. Among them, tethered-Bilayer Lipid Membranes (tBLMs) appear as the best model because they allow the lipid bilayer to be decoupled from the support. Thus, they provide a sufficient aqueous space to envisage the proper accommodation of large extra-membranous domains of MPs, extending outside. Additionally, as the bilayer remains attached to tethers covalently fixed to the solid support, they can be investigated by a wide variety of surface-sensitive analytical techniques. This review provides an overview of the different approaches developed over the last two decades to achieve sophisticated tBLMs, with a more and more complex lipid composition and adapted for functional MP reconstitution.
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3
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Joshi SY, Deshmukh SA. A review of advancements in coarse-grained molecular dynamics simulations. MOLECULAR SIMULATION 2020. [DOI: 10.1080/08927022.2020.1828583] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Soumil Y. Joshi
- Department of Chemical Engineering, Virginia Tech, Blacksburg, VA, USA
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4
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Benedetti F, Fu L, Thalmann F, Charitat T, Rubin A, Loison C. Coarse-Grain Simulations of Solid Supported Lipid Bilayers with Varying Hydration Levels. J Phys Chem B 2020; 124:8287-8298. [DOI: 10.1021/acs.jpcb.0c03913] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Florian Benedetti
- Institut Lumière Matière, University of Lyon, Université Claude Bernard Lyon 1, CNRS, F-69622, Villeurbanne, France
| | - Li Fu
- Institut Charles Sadron, Université de Strasbourg, CNRS, 23 rue du Loess, BP 84047, 67034 Strasbourg Cedex 2, France
| | - Fabrice Thalmann
- Institut Charles Sadron, Université de Strasbourg, CNRS, 23 rue du Loess, BP 84047, 67034 Strasbourg Cedex 2, France
| | - Thierry Charitat
- Institut Charles Sadron, Université de Strasbourg, CNRS, 23 rue du Loess, BP 84047, 67034 Strasbourg Cedex 2, France
| | - Anne Rubin
- Institut Charles Sadron, Université de Strasbourg, CNRS, 23 rue du Loess, BP 84047, 67034 Strasbourg Cedex 2, France
| | - Claire Loison
- Institut Lumière Matière, University of Lyon, Université Claude Bernard Lyon 1, CNRS, F-69622, Villeurbanne, France
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5
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Priske G, Su Z, Abbasi F, Lipkowski J, Auzanneau FI. Synthesis and electrochemical characterization of 4-thio pseudo-glycolipids as candidate tethers for lipid bilayer models. Electrochim Acta 2019. [DOI: 10.1016/j.electacta.2018.12.048] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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6
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Andersson J, Knobloch JJ, Perkins MV, Holt SA, Köper I. Synthesis and Characterization of Novel Anchorlipids for Tethered Bilayer Lipid Membranes. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:4444-4451. [PMID: 28387116 DOI: 10.1021/acs.langmuir.7b00778] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Tethered bilayer lipid membranes are versatile solid-supported model membrane systems. Core to these systems is an anchorlipid that covalently links a lipid bilayer to a support. The molecular structure of these lipids can have a significant impact on the properties of the resulting bilayer. Here, the synthesis of anchorlipids containing ester groups in the tethering part is described. The lipids are used to form bilayer membranes, and the resulting structures are compared with membranes formed using conventional anchorlipids or sparsely tethered membranes. All membranes showed good electrical sealing properties; the disulphide-terminated anchorlipids could be used in a sparsely tethered system without significantly reducing the sealing properties of the lipid bilayers. The sparsely tethered systems also allowed for higher ion transport across the membrane, which is in good correlation with higher hydration of the spacer region as seen by neutron scattering.
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Affiliation(s)
- Jakob Andersson
- Flinders Centre for Nanoscalce Science and Technology and School of Chemical and Physical Sciences, Flinders University , Adelaide 5042, Australia
| | - Jacqueline J Knobloch
- Flinders Centre for Nanoscalce Science and Technology and School of Chemical and Physical Sciences, Flinders University , Adelaide 5042, Australia
| | - Michael V Perkins
- Flinders Centre for Nanoscalce Science and Technology and School of Chemical and Physical Sciences, Flinders University , Adelaide 5042, Australia
| | - Stephen A Holt
- Australian Centre for Neutron Scattering, Australian Nuclear Science and Technology Organisation , Locked Bag 2001, Kirrawee DC, New South Wales 2234, Australia
| | - Ingo Köper
- Flinders Centre for Nanoscalce Science and Technology and School of Chemical and Physical Sciences, Flinders University , Adelaide 5042, Australia
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7
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Willems N, Urtizberea A, Verre AF, Iliut M, Lelimousin M, Hirtz M, Vijayaraghavan A, Sansom MSP. Biomimetic Phospholipid Membrane Organization on Graphene and Graphene Oxide Surfaces: A Molecular Dynamics Simulation Study. ACS NANO 2017; 11:1613-1625. [PMID: 28165704 DOI: 10.1021/acsnano.6b07352] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Supported phospholipid membrane patches stabilized on graphene surfaces have shown potential in sensor device functionalization, including biosensors and biocatalysis. Lipid dip-pen nanolithography (L-DPN) is a method useful in generating supported membrane structures that maintain lipid functionality, such as exhibiting specific interactions with protein molecules. Here, we have integrated L-DPN, atomic force microscopy, and coarse-grained molecular dynamics simulation methods to characterize the molecular properties of supported lipid membranes (SLMs) on graphene and graphene oxide supports. We observed substantial differences in the topologies of the stabilized lipid structures depending on the nature of the surface (polar graphene oxide vs nonpolar graphene). Furthermore, the addition of water to SLM systems resulted in large-scale reorganization of the lipid structures, with measurable effects on lipid lateral mobility within the supported membranes. We also observed reduced lipid ordering within the supported structures relative to free-standing lipid bilayers, attributed to the strong hydrophobic interactions between the lipids and support. Together, our results provide insight into the molecular effects of graphene and graphene oxide surfaces on lipid bilayer membranes. This will be important in the design of these surfaces for applications such as biosensor devices.
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Affiliation(s)
- Nathalie Willems
- Department of Biochemistry, University of Oxford , South Parks Road, Oxford OX1 3QU, United Kingdom
| | - Ainhoa Urtizberea
- Institute of Nanotechnology (INT) and Karlsruhe Nano Micro Facility (KNMF), Karlsruhe Institute of Technology (KIT) , 76344 Eggenstein-Leopoldshafen, Germany
| | - Andrea F Verre
- School of Materials and National Graphene Institute, University of Manchester , Manchester M13 9PL, United Kingdom
| | - Maria Iliut
- School of Materials and National Graphene Institute, University of Manchester , Manchester M13 9PL, United Kingdom
| | - Mickael Lelimousin
- CERMAV, CNRS and Université Grenoble Alpes , BP 53, Grenoble 38041 Cedex 9, France
| | - Michael Hirtz
- Institute of Nanotechnology (INT) and Karlsruhe Nano Micro Facility (KNMF), Karlsruhe Institute of Technology (KIT) , 76344 Eggenstein-Leopoldshafen, Germany
| | - Aravind Vijayaraghavan
- School of Materials and National Graphene Institute, University of Manchester , Manchester M13 9PL, United Kingdom
| | - Mark S P Sansom
- Department of Biochemistry, University of Oxford , South Parks Road, Oxford OX1 3QU, United Kingdom
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8
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Boughter CT, Monje-Galvan V, Im W, Klauda JB. Influence of Cholesterol on Phospholipid Bilayer Structure and Dynamics. J Phys Chem B 2016; 120:11761-11772. [DOI: 10.1021/acs.jpcb.6b08574] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Christopher T. Boughter
- Department
of Chemical and Biomolecular Engineering, University of Maryland, College
Park, Maryland 20742, United States
| | - Viviana Monje-Galvan
- Department
of Chemical and Biomolecular Engineering, University of Maryland, College
Park, Maryland 20742, United States
| | - Wonpil Im
- Department
of Biological Sciences and Bioengineering Program, Lehigh University, Bethlehem, Pennsylvania 18015, United States
| | - Jeffery B. Klauda
- Department
of Chemical and Biomolecular Engineering, University of Maryland, College
Park, Maryland 20742, United States
- Biophysics
Program, University of Maryland, College Park, Maryland 20742, United States
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9
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Koutsioubas A. Combined Coarse-Grained Molecular Dynamics and Neutron Reflectivity Characterization of Supported Lipid Membranes. J Phys Chem B 2016; 120:11474-11483. [DOI: 10.1021/acs.jpcb.6b05433] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Alexandros Koutsioubas
- Jülich Centre for
Neutron Science (JCNS) at Heinz Maier-Leibnitz Zentrum (MLZ), Forschungszentrum Jülich GmbH, Lichtenbergstr. 1, 85748 Garching, Germany
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10
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Hoiles W, Gupta R, Cornell B, Cranfield C, Krishnamurthy V. The Effect of Tethers on Artificial Cell Membranes: A Coarse-Grained Molecular Dynamics Study. PLoS One 2016; 11:e0162790. [PMID: 27736860 PMCID: PMC5063460 DOI: 10.1371/journal.pone.0162790] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2015] [Accepted: 08/29/2016] [Indexed: 11/18/2022] Open
Abstract
Tethered bilayer lipid membranes (tBLMs) provide a stable platform for modeling the dynamics and order of biological membranes where the tethers mimic the cytoskeletal supports present in biological cell membranes. In this paper coarse-grained molecular dynamics (CGMD) is applied to study the effects of tethers on lipid membrane properties. Using results from the CGMD model and the overdamped Fokker-Planck equation, we show that the diffusion tensor and particle density of water in the tBLM is spatially dependent. Further, it is shown that the membrane thickness, lipid diffusion, defect density, free energy of lipid flip-flop, and membrane dielectric permittivity are all dependent on the tether density. The numerically computed results from the CGMD model are in agreement with the experimentally measured results from tBLMs containing different tether densities and lipids derived from Archaebacteria. Additionally, using experimental measurements from Escherichia coli bacteria and Saccharomyces Cerevisiae yeast tethered membranes, we illustrate how previous molecular dynamics results can be combined with the proposed model to estimate the dielectric permittivity and defect density of these membranes as a function of tether density.
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Affiliation(s)
- William Hoiles
- Department of Electrical and Computer Engineering, The University of British Columbia, Vancouver, British Columbia, Canada
| | - Rini Gupta
- Department of Electrical and Computer Engineering, The University of British Columbia, Vancouver, British Columbia, Canada
| | - Bruce Cornell
- Director of Science and Technology, Surgical Diagnostics Pty Ltd., Unit 6 30-32 Barcoo Street, Roseville, New South Wales, 2069, Australia
| | - Charles Cranfield
- School of Life Sciences, University of Technology Sydney, Broadway, New South Wales, Australia
| | - Vikram Krishnamurthy
- Electrical and Computer Engineering, Cornell University, New York, New York, United States of America
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11
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Andersson J, Köper I. Tethered and Polymer Supported Bilayer Lipid Membranes: Structure and Function. MEMBRANES 2016; 6:E30. [PMID: 27249006 PMCID: PMC4931525 DOI: 10.3390/membranes6020030] [Citation(s) in RCA: 70] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/04/2016] [Revised: 05/24/2016] [Accepted: 05/25/2016] [Indexed: 11/30/2022]
Abstract
Solid supported bilayer lipid membranes are model systems to mimic natural cell membranes in order to understand structural and functional properties of such systems. The use of a model system allows for the use of a wide variety of analytical tools including atomic force microscopy, impedance spectroscopy, neutron reflectometry, and surface plasmon resonance spectroscopy. Among the large number of different types of model membranes polymer-supported and tethered lipid bilayers have been shown to be versatile and useful systems. Both systems consist of a lipid bilayer, which is de-coupled from an underlying support by a spacer cushion. Both systems will be reviewed, with an emphasis on the effect that the spacer moiety has on the bilayer properties.
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Affiliation(s)
- Jakob Andersson
- Flinders Centre for Nanoscale Science and Technology, School of Chemical and Physical Sciences, Flinders University, Adelaide SA 5001, Australia.
| | - Ingo Köper
- Flinders Centre for Nanoscale Science and Technology, School of Chemical and Physical Sciences, Flinders University, Adelaide SA 5001, Australia.
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12
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Hu M, Stanzione F, Sum AK, Faller R, Deserno M. Design Principles for Nanoparticles Enveloped by a Polymer-Tethered Lipid Membrane. ACS NANO 2015; 9:9942-9954. [PMID: 26380891 DOI: 10.1021/acsnano.5b03439] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
We propose the design for a nanoparticle carrier that combines three existing motifs into a single construct: a liposome is stabilized by anchoring it to an enclosed solid core via extended polymeric tethers that are chemically grafted to the core and physisorb into the surrounding lipid membrane. Such a design would exhibit several enticing properties, among them: (i) the anchoring stabilizes the liposome against a variety of external stresses, while preserving an aqueous compartment between core and membrane; (ii) the interplay of design parameters such as polymer length or grafting density enforces strong constraints on nanoparticle size and hence ensures a high degree of uniformity; and (iii) the physical and chemical characteristics of the individual constituents equip the construct with numerous functionalities that can be exploited in many ways. However, navigating the large parameter space requires a sound prior understanding for how various design features work together, and how this impacts potential pathways for synthesizing and assembling these nanoparticles. In this paper, we examine these connections in detail, using both soft matter theory and computer simulations at all levels of resolution. We thereby derive strong constraints on the experimentally relevant parameter space, and also propose potential equilibrium and nonequilibrium pathways for nanoparticle assembly.
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Affiliation(s)
- Mingyang Hu
- Department of Physics, Carnegie Mellon University , Pittsburgh, Pennsylvania 15213, United States
| | - Francesca Stanzione
- Department of Chemical and Biological Engineering, Colorado School of Mines , Golden, Colorado 80401, United States
| | - Amadeu K Sum
- Department of Chemical and Biological Engineering, Colorado School of Mines , Golden, Colorado 80401, United States
| | - Roland Faller
- Department of Chemical Engineering and Materials Science, University of California, Davis , Davis, California 95616, United States
| | - Markus Deserno
- Department of Physics, Carnegie Mellon University , Pittsburgh, Pennsylvania 15213, United States
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13
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Rakovska B, Ragaliauskas T, Mickevicius M, Jankunec M, Niaura G, Vanderah DJ, Valincius G. Structure and function of the membrane anchoring self-assembled monolayers. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2015; 31:846-857. [PMID: 25525904 DOI: 10.1021/la503715b] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Structure of the self-assembled monolayers (SAMs) used to anchor phospholipid bilayers to surfaces affects the functional properties of the tethered bilayer membranes (tBLMs). SAMs of the same surface composition differing in the lateral distribution of the anchor molecule give rise to tBLMs of profoundly different defectiveness with residual conductance spanning 3 orders of magnitude. SAMs composed of anchors containing saturated alkyl chains, upon exposure to water (72 h), reconstruct to tightly packed clusters as deduced from reflection absorption infrared spectroscopy data and directly visualized by atomic force microscopy. The rearrangement into clusters results in an inability to establish highly insulating tBLMs on the same anchor layer. Unexpectedly, we also found that nanometer scale smooth gold film surfaces, populated predominantly with (111) facets, exhibit poor performance from the standpoint of the defectiveness of the anchored phospholipid bilayers, while corrugated (110) dominant surfaces produced SAMs with superior tethering quality. Although the detailed mechanism of cluster formation remains to be clarified, it appears that smooth surfaces favor lateral translocation of the molecular anchors, resulting in changes in functional properties of the SAMs. This work unequivocally establishes that conditions that favor cluster formation of the anchoring molecules in tBLM formation must be identified and avoided for the functional use of tBLMs in biomedical and diagnostic applications.
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Affiliation(s)
- Bozena Rakovska
- Institute of Biochemistry, Vilnius University , Mokslininku 12, Vilnius 08662, Lithuania
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14
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Lamberg A, Taniguchi T. Coarse-Grained Computational Studies of Supported Bilayers: Current Problems and Their Root Causes. J Phys Chem B 2014; 118:10643-52. [DOI: 10.1021/jp5053419] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Antti Lamberg
- Department of Chemical Engineering, Kyoto University, Kyoto 615−8510, Japan
| | - Takashi Taniguchi
- Department of Chemical Engineering, Kyoto University, Kyoto 615−8510, Japan
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15
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16
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de Jong DH, Singh G, Bennett WFD, Arnarez C, Wassenaar TA, Schäfer LV, Periole X, Tieleman DP, Marrink SJ. Improved Parameters for the Martini Coarse-Grained Protein Force Field. J Chem Theory Comput 2012; 9:687-97. [DOI: 10.1021/ct300646g] [Citation(s) in RCA: 922] [Impact Index Per Article: 76.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Djurre H. de Jong
- Groningen Biomolecular Sciences
and Biotechnology Institute and Zernike Institute for Advanced Materials,
University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Gurpreet Singh
- Department of Biological Sciences
and Institute for Biocomplexity and Informatics, University of Calgary,
2500 University Dr. NW, Calgary, AB, Canada, T2N 1N4
| | - W. F. Drew Bennett
- Department of Biological Sciences
and Institute for Biocomplexity and Informatics, University of Calgary,
2500 University Dr. NW, Calgary, AB, Canada, T2N 1N4
| | - Clement Arnarez
- Groningen Biomolecular Sciences
and Biotechnology Institute and Zernike Institute for Advanced Materials,
University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Tsjerk A. Wassenaar
- Groningen Biomolecular Sciences
and Biotechnology Institute and Zernike Institute for Advanced Materials,
University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Lars V. Schäfer
- Groningen Biomolecular Sciences
and Biotechnology Institute and Zernike Institute for Advanced Materials,
University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - Xavier Periole
- Groningen Biomolecular Sciences
and Biotechnology Institute and Zernike Institute for Advanced Materials,
University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
| | - D. Peter Tieleman
- Department of Biological Sciences
and Institute for Biocomplexity and Informatics, University of Calgary,
2500 University Dr. NW, Calgary, AB, Canada, T2N 1N4
| | - Siewert J. Marrink
- Groningen Biomolecular Sciences
and Biotechnology Institute and Zernike Institute for Advanced Materials,
University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
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