Effect of grafted oligopeptides on friction

Experimental and theoretical elucidation of catalytic pathways in TiO2-initiated prebiotic polymerization

The tendency of glycine to form polymer chains on a rutile(110) surface under wet/dry conditions (dry-wet cycles at high temperature) is studied through a conjunction of surface sensitive experimental techniques and sequential periodic multilevel calculations that mimics the experimental procedures with models of decreasing complexity and increasing accuracy. X-ray photoemission spectroscopy (XPS) and thermal desorption spectroscopy (TDS) experimentally confirmed that the dry-wet cycles lead to Gly polymerization on the oxide support. This was supported by all the theoretical characterizations. First, classical reactive molecular dynamics (MD) simulations based on the ReaxFF approach were used to reproduce the adsorption of the experimental glycine solution droplets sprayed onto an oxide support and to identify the most probable arrangement of the molecules that triggered the polymerization mechanisms. Then, quantum chemistry density functional tight binding (DF-TB) MDs and static density functional theory (DFT) calculations were carried out to further explore favorable configurations and to evaluate the energy barriers of the most promising reaction pathways for the peptide bond-formation reactions. The results confirmed the fundamental role played by the substrate to thermodynamically and kinetically favor the process and disclosed its main function as an immobilizing agent: the molecules accommodated in the surface channels close to each other were the ones starting the key events of the dimerization process and the most favorable mechanism was the one where a water molecule acted as a proton exchange mediator in the condensation process.

On the Derjaguin offset in boundary-lubricated nanotribological systems

We performed molecular dynamics simulations of boundary-lubricated sliding, varying the boundary lubricant type, its molecular surface coverage, the substrate roughness, and the load. The resulting load versus friction behavior was then analyzed to study how changes in lubricant type, coverage, and roughness affect the extrapolated friction force at zero load, the so-called Derjaguin offset. A smooth-particle-based evaluation method by the authors, applied here for the first time to visualize the sliding interface between the two layers of boundary lubricant, allowed the definition and calculation of a dimensionless normalized sliding resistance area, which was then related to the Derjaguin offset. This relationship excellently reflects the molecular surface coverage, which determines the physical condition of the lubricant, and can differentiate between some lubricant-specific frictional properties.