Mesomorphic Phases of Flexible Polymers: The Self-Compacting Chain Model

Design, synthesis and thermotropic self-organization of dendronized polystyrenes with different length alkyl tails

A reentrant phase is observed for the first time in dendronized polystyrenes with high molecular weight through regulating the length of tail chains.

Electrostatic free energy landscapes for nucleic acid helix assembly

Metal ions are crucial for nucleic acid folding. From the free energy landscapes, we investigate the detailed mechanism for ion-induced collapse for a paradigm system: loop-tethered short DNA helices. We find that Na+ and Mg2+ play distinctive roles in helix-helix assembly. High [Na+] (>0.3 M) causes a reduced helix-helix electrostatic repulsion and a subsequent disordered packing of helices. In contrast, Mg2+ of concentration >1 mM is predicted to induce helix-helix attraction and results in a more compact and ordered helix-helix packing. Mg2+ is much more efficient in causing nucleic acid compaction. In addition, the free energy landscape shows that the tethering loops between the helices also play a significant role. A flexible loop, such as a neutral loop or a polynucleotide loop in high salt concentration, enhances the close approach of the helices in order to gain the loop entropy. On the other hand, a rigid loop, such as a polynucleotide loop in low salt concentration, tends to de-compact the helices. Therefore, a polynucleotide loop significantly enhances the sharpness of the ion-induced compaction transition. Moreover, we find that a larger number of helices in the system or a smaller radius of the divalent ions can cause a more abrupt compaction transition and a more compact state at high ion concentration, and the ion size effect becomes more pronounced as the number of helices is increased.

Crystals and crystallinity in polymeric materials

A new view of the concepts of crystallinity and crystals in synthetic macromolecules is discussed. In polymeric materials, crystallinity may be present with the concomitant occurrence of large amounts of structural disorder and in the absence of true three-dimensional long-range order. The structures of semicrystalline polymeric materials are discussed in terms of idealized limit models of crystals, where long-range order may be achieved for structural features that are not necessarily coincident with single atoms and are not necessarily point-centered. Typical examples of non-point-centered structural features are the straight lines corresponding to the chain axes of polymer molecules. This view explains the unusual ability of polymers to crystallize even in the presence of a high degree of structural disorder.