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Neu TR, Manz B, Volke F, Dynes JJ, Hitchcock AP, Lawrence JR. Advanced imaging techniques for assessment of structure, composition and function in biofilm systems. FEMS Microbiol Ecol 2010; 72:1-21. [PMID: 20180852 DOI: 10.1111/j.1574-6941.2010.00837.x] [Citation(s) in RCA: 124] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Abstract
Scientific imaging represents an important and accepted research tool for the analysis and understanding of complex natural systems. Apart from traditional microscopic techniques such as light and electron microscopy, new advanced techniques have been established including laser scanning microscopy (LSM), magnetic resonance imaging (MRI) and scanning transmission X-ray microscopy (STXM). These new techniques allow in situ analysis of the structure, composition, processes and dynamics of microbial communities. The three techniques open up quantitative analytical imaging possibilities that were, until a few years ago, impossible. The microscopic techniques represent powerful tools for examination of mixed environmental microbial communities usually encountered in the form of aggregates and films. As a consequence, LSM, MRI and STXM are being used in order to study complex microbial biofilm systems. This mini review provides a short outline of the more recent applications with the intention to stimulate new research and imaging approaches in microbiology.
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Affiliation(s)
- Thomas R Neu
- Department of River Ecology, Helmholtz Centre for Environmental Research - UFZ, Magdeburg, Germany.
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Manz B, Volke F, Goll D, Horn H. Measuring local flow velocities and biofilm structure in biofilm systems with Magnetic Resonance Imaging (MRI). Biotechnol Bioeng 2003; 84:424-32. [PMID: 14574699 DOI: 10.1002/bit.10782] [Citation(s) in RCA: 96] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
The characterization of substrate transport in the bulk phase and in the biofilm matrix is one of the problems which has to be solved for the verification of biofilm models. Additionally, the surface structure of biofilms has to be described with appropriate parameters. Magnetic resonance imaging (MRI) is one of the promising methods for the investigation of transport phenomena and structure in biofilm systems. The MRI technique allows the noninvasive determination of flow velocities and biofilm structures with a high resolution on the sub-millimeter scale. The presented investigations were carried out for defined heterotrophic biofilms which were cultivated in a tube reactor at a Reynolds number of 2000 and 8000 and a substrate load of 6 and 4 g/m2d glucose. Magnetic resonance imaging provides both structure data of the biofilm surface and flow velocities in the bulk phase and at the bulk/biofilm interface. It is shown that the surface roughness of the biofilms can be determined in one experiment for the complete cross section of the test tubes both under flow and stagnant conditions. Furthermore, the local shear stress was calculated from the measured velocity profiles. In the investigated biofilm systems the local shear stress at the biofilm surface was up to 3 times higher compared to the mean wall shear stress calculated on the base of the mean flow velocity.
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Affiliation(s)
- Bertram Manz
- Fraunhofer-Institute of Biomedical Engineering (IBMT), Ensheimer Strasse 48, D-66386 St. Ingbert, Germany
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Schneider H, Manz B, Westhoff M, Mimietz S, Szimtenings M, Neuberger T, Faber C, Krohne G, Haase A, Volke F, Zimmermann U. The impact of lipid distribution, composition and mobility on xylem water refilling of the resurrection plant Myrothamnus flabellifolia. THE NEW PHYTOLOGIST 2003; 159:487-505. [PMID: 33873352 DOI: 10.1046/j.1469-8137.2003.00814.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
• Lipids play a crucial role in the maintenance of the structural and functional integrity of the water-conducting elements and cells of the resurrection plant Myrothamnus flabellifolia during complete dehydration. • Lipid composition, mobility and distribution within the internodal and nodal xylem regions (including short shoots and leaves) were investigated in the presence and absence of water by using various nuclear magnetic resonance (NMR) spectroscopy and imaging techniques differing greatly in the level of spatial resolution and acquisition of lipid parameters. • Significant findings include: a discontinuity in the branch xylem between an inner zone where no water moves and an outer zone where the water moves; the blocking of water movement in the inner zone by lipids that are not dispersed by water, and the facilitation of water advance in the xylem elements and pits of the outer zone by water-dispersed lipids; the relative impermeability of leaf trace xylem to the rehydrating water and, hence, the relative hydraulic isolation of the leaves. • These results elucidated part of the strategy used by the resurrection plant to cope with extreme drought and to minimize transpirational water loss upon hydration.
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Affiliation(s)
- H Schneider
- Lehrstuhl für Biotechnologie, Biozentrum der Universität, Am Hubland, D-97074 Würzburg, Germany
| | - B Manz
- Fraunhofer Institut für Biomedizinische Technik, Ensheimer Strasse 48, D-66386 St Ingbert, Germany
| | - M Westhoff
- Lehrstuhl für Biotechnologie, Biozentrum der Universität, Am Hubland, D-97074 Würzburg, Germany
| | - S Mimietz
- Lehrstuhl für Biotechnologie, Biozentrum der Universität, Am Hubland, D-97074 Würzburg, Germany
| | - M Szimtenings
- Lehrstuhl für Experimentelle Physik V (Biophysik) der Universität, Am Hubland, D-97074 Würzburg, Germany
| | - T Neuberger
- Lehrstuhl für Experimentelle Physik V (Biophysik) der Universität, Am Hubland, D-97074 Würzburg, Germany
| | - C Faber
- Lehrstuhl für Experimentelle Physik V (Biophysik) der Universität, Am Hubland, D-97074 Würzburg, Germany
| | - G Krohne
- Abteilung für Elektronenmikroskopie, Biozentrum der Universität, Am Hubland, D-97074 Würzburg, Germany
| | - A Haase
- Lehrstuhl für Experimentelle Physik V (Biophysik) der Universität, Am Hubland, D-97074 Würzburg, Germany
| | - F Volke
- Fraunhofer Institut für Biomedizinische Technik, Ensheimer Strasse 48, D-66386 St Ingbert, Germany
| | - U Zimmermann
- Lehrstuhl für Biotechnologie, Biozentrum der Universität, Am Hubland, D-97074 Würzburg, Germany
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Baille WE, Malveau C, Zhu XX, Kim YH, Ford WT. Self-Diffusion of Hydrophilic Poly(propyleneimine) Dendrimers in Poly(vinyl alcohol) Solutions and Gels by Pulsed Field Gradient NMR Spectroscopy. Macromolecules 2003. [DOI: 10.1021/ma025636k] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Formation and reorientation dynamics of nitroxides in the controlled radical polymerisation of styrene initiated by a bisalkoxyamine. POLYMER 2003. [DOI: 10.1016/s0032-3861(02)00741-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Chekal BP, Torkelson JM. Relationship between Chain Length and the Concentration Dependence of Polymer and Oligomer Self-Diffusion in Solution. Macromolecules 2002. [DOI: 10.1021/ma020859w] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Brian P. Chekal
- Department of Chemical Engineering and Department of Materials Science and Engineering, Northwestern University, Evanston, Illinois 60208-3120
| | - John M. Torkelson
- Department of Chemical Engineering and Department of Materials Science and Engineering, Northwestern University, Evanston, Illinois 60208-3120
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Affiliation(s)
- P. T. Callaghan
- Institute of Fundamental Sciences-Physics, Massey University, Palmerston North, New Zealand, and Department of Chemistry, University of Aveiro, 3810-193 Aveiro, Portugal
| | - A. M. Gil
- Institute of Fundamental Sciences-Physics, Massey University, Palmerston North, New Zealand, and Department of Chemistry, University of Aveiro, 3810-193 Aveiro, Portugal
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Adam M, Farago B, Schleger P, Raspaud E, Lairez D. Binary Contacts in Semidilute Solution: Good and ϑ Solvents. Macromolecules 1998. [DOI: 10.1021/ma980936g] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- M. Adam
- Institut Laue-Langevin, BP 156, 38042 Grenoble, France
| | - B. Farago
- Institut Laue-Langevin, BP 156, 38042 Grenoble, France
| | - P. Schleger
- Institut Laue-Langevin, BP 156, 38042 Grenoble, France
| | - E. Raspaud
- Laboratoire de Physique des Solides, CNRS URA D 002, Universite Paris Sud, 91405 Orsay Cedex, France
| | - D. Lairez
- Laboratoire Léon Brillouin (CEA-CNRS), CE-Saclay, 91191 Gif-sur-Yvette Cedex, France
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Shear-Induced Orientational Order in a Polystyrene/Benzene-d6 Solution As Observed by 2H NMR. Macromolecules 1998; 31:4986-9. [PMID: 9680438 DOI: 10.1021/ma971378t] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Using a home-built Couette-type shear cell we studied the behavior of a concentrated solution of polystyrene in benzene-d6 under shear. Deuterium NMR revealed a shear-dependent splitting of the benzene-d6 signal, indicating partial orientation of the polystyrene due to shear forces. Our preliminary results show a linear relationship between the order parameter Szz of the benzene molecule and the shear rate gamma for the interval 0 s-1 </= gamma < 400 s-1.
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