1
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Nooteboom SW, Okholm KR, Lamberti V, Oomen B, Sutherland DS, Zijlstra P. Rate-Engineered Plasmon-Enhanced Fluorescence for Real-Time Microsecond Dynamics of Single Biomolecules. NANO LETTERS 2024; 24:11641-11647. [PMID: 39248371 PMCID: PMC11421078 DOI: 10.1021/acs.nanolett.4c03220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/10/2024]
Abstract
Single-molecule fluorescence has revealed a wealth of biochemical processes but does not give access to submillisecond dynamics involved in transient interactions and molecular dynamics. Here we overcome this bottleneck and demonstrate record-high photon count rates of >107 photons/s from single plasmon-enhanced fluorophores. This is achieved by combining two conceptual novelties: first, we balance the excitation and decay rate enhancements by the antenna's volume, resulting in maximum fluorescence intensity. Second, we enhance the triplet decay rate using a multicomponent surface chemistry that minimizes microsecond blinking. We demonstrate applications to two exemplary molecular processes: we first reveal transient encounters and hybridization of DNA with a 1 μs temporal resolution. Second, we exploit the field gradient around the nanoparticle as a molecular ruler to reveal microsecond intramolecular dynamics of multivalent complexes. Our results pave the way toward real-time microsecond studies of biochemical processes using an implementation compatible with existing single-molecule fluorescence methods.
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Affiliation(s)
- Sjoerd W Nooteboom
- Department of Applied Physics and Science Education, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands
- Institute for Complex Molecular Systems, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands
| | - Kasper R Okholm
- Interdisciplinary Nanoscience Center, Aarhus University, 8000 Aarhus C, Denmark
- The Centre for Cellular Signal Patterns (CELLPAT), 8000 Aarhus C, Denmark
| | - Vincenzo Lamberti
- Department of Applied Physics and Science Education, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands
- Institute for Complex Molecular Systems, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands
| | - Bas Oomen
- Department of Applied Physics and Science Education, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands
- Institute for Complex Molecular Systems, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands
| | - Duncan S Sutherland
- Interdisciplinary Nanoscience Center, Aarhus University, 8000 Aarhus C, Denmark
- The Centre for Cellular Signal Patterns (CELLPAT), 8000 Aarhus C, Denmark
| | - Peter Zijlstra
- Department of Applied Physics and Science Education, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands
- Institute for Complex Molecular Systems, Eindhoven University of Technology, 5600 MB Eindhoven, The Netherlands
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2
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Morla-Folch J, Ranzenigo A, Fayad ZA, Teunissen AJP. Nanotherapeutic Heterogeneity: Sources, Effects, and Solutions. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2307502. [PMID: 38050951 PMCID: PMC11045328 DOI: 10.1002/smll.202307502] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 10/30/2023] [Indexed: 12/07/2023]
Abstract
Nanomaterials have revolutionized medicine by enabling control over drugs' pharmacokinetics, biodistribution, and biocompatibility. However, most nanotherapeutic batches are highly heterogeneous, meaning they comprise nanoparticles that vary in size, shape, charge, composition, and ligand functionalization. Similarly, individual nanotherapeutics often have heterogeneously distributed components, ligands, and charges. This review discusses nanotherapeutic heterogeneity's sources and effects on experimental readouts and therapeutic efficacy. Among other topics, it demonstrates that heterogeneity exists in nearly all nanotherapeutic types, examines how nanotherapeutic heterogeneity arises, and discusses how heterogeneity impacts nanomaterials' in vitro and in vivo behavior. How nanotherapeutic heterogeneity skews experimental readouts and complicates their optimization and clinical translation is also shown. Lastly, strategies for limiting nanotherapeutic heterogeneity are reviewed and recommendations for developing more reproducible and effective nanotherapeutics provided.
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Affiliation(s)
- Judit Morla-Folch
- Biomedical Engineering and Imaging Institute, Icahn School of Medicine at Mount Sinai, New York, 10029, NY, USA
- Cardiovascular Research Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
| | - Anna Ranzenigo
- Biomedical Engineering and Imaging Institute, Icahn School of Medicine at Mount Sinai, New York, 10029, NY, USA
- Cardiovascular Research Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
| | - Zahi Adel Fayad
- Biomedical Engineering and Imaging Institute, Icahn School of Medicine at Mount Sinai, New York, 10029, NY, USA
- Cardiovascular Research Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
| | - Abraham Jozef Petrus Teunissen
- Biomedical Engineering and Imaging Institute, Icahn School of Medicine at Mount Sinai, New York, 10029, NY, USA
- Cardiovascular Research Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
- Icahn Genomics Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA
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3
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Behan J, Xie Z, Wang YF, Yang X, Aastrup T, Yan Y, Adumeau L, Dawson KA. Quartz Crystal Microbalance Method to Measure Nanoparticle-Receptor Interactions and Evaluate Nanoparticle Design Efficiency. JACS AU 2023; 3:1623-1633. [PMID: 37388690 PMCID: PMC10301671 DOI: 10.1021/jacsau.3c00084] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 04/03/2023] [Accepted: 04/24/2023] [Indexed: 07/01/2023]
Abstract
Conjugation of biomolecules on the surface of nanoparticles (NPs) to achieve active targeting is widely investigated within the scientific community. However, while a basic framework of the physicochemical processes underpinning bionanoparticle recognition is now emerging, the precise evaluation of the interactions between engineered NPs and biological targets remains underdeveloped. Here, we show how the adaptation of a method currently used to evaluate molecular ligand-receptor interactions by quartz crystal microbalance (QCM) can be used to obtain concrete insights into interactions between different NP architectures and assemblies of receptors. Using a model bionanoparticle grafted with oriented apolipoprotein E (ApoE) fragments, we examine key aspects of bionanoparticle engineering for effective interactions with target receptors. We show that the QCM technique can be used to rapidly measure construct-receptor interactions across biologically relevant exchange times. We contrast random adsorption of the ligand at the surface of the NPs, resulting in no measurable interaction with target receptors, to grafted oriented constructs, which are strongly recognized even at lower graft densities. The effects of other basic parameters impacting the interaction such as ligand graft density, receptor immobilization density, and linker length were also efficiently evaluated with this technique. Dramatic changes in interaction outcomes with subtle alterations in these parameters highlight the general importance of measuring the interactions between engineered NPs and target receptors ex situ early on in the construct development process for the rational design of bionanoparticles.
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Affiliation(s)
- James
A. Behan
- Centre
for BioNano Interactions, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Zengchun Xie
- Centre
for BioNano Interactions, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Yi-Feng Wang
- Centre
for BioNano Interactions, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Xiaoliang Yang
- Centre
for BioNano Interactions, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Teodor Aastrup
- Attana
AB, Greta Arwidssons
Väg 21, Stockholm SE-11419, Sweden
| | - Yan Yan
- UCD
Conway Institute of Biomolecular and Biomedical Research, School of
Biomolecular and Biomedical Science, University
College Dublin, Belfield, Dublin 4, Ireland
| | - Laurent Adumeau
- Centre
for BioNano Interactions, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Kenneth A. Dawson
- Centre
for BioNano Interactions, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
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4
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Ohashi M, Tamura A, Yui N. Exploring Receptor Binding Affinities and Hepatic Cell Association of N-Acetyl-d-Galactosamine-Modified β-Cyclodextrin-Based Polyrotaxanes for Liver-Targeted Therapies. Biomacromolecules 2023; 24:2327-2341. [PMID: 37036902 DOI: 10.1021/acs.biomac.3c00194] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
Abstract
Acid-degradable polyrotaxanes (PRXs) containing threading β-cyclodextrins (β-CDs) are promising candidates for therapeutic applications of β-CDs in metabolic diseases with cholesterol overload or imbalance. To improve cellular uptake specificity and efficiency of PRXs in hepatocytes, N-acetyl-d-galactosamine (GalNAc)-modified PRXs were developed to facilitate asialoglycoprotein receptor (ASGR)-mediated endocytosis. Binding affinity studies revealed that the dissociation constant (KD) values between recombinant ASGR and GalNAc-PRXs decreased with an increase in the number of modified GalNAc units. Additionally, the KD values for GalNAc-PRXs were smaller than those for GalNAc-modified β-CD and amylose, suggesting that the PRX backbone structure improves the binding affinity with ASGR. However, the intracellular uptake levels of GalNAc-PRXs in HepG2 cells increased with a decrease in the number of modified GalNAc units, which was opposite to the trend observed in the binding affinity study. We found that GalNAc-PRXs had a large number of GalNAc units localized in recycling endosomes, resulting in the low intracellular uptake. The cholesterol-reducing abilities of GalNAc-PRXs were assessed using cholesterol-overloaded HepG2 cells. GalNAc-PRXs with a small number of GalNAc units were demonstrated to show superior cholesterol-reducing effects compared to previously designed acid-degradable PRX and clinically tested β-CD derivatives. Thus, we conclude that GalNAc modification is a promising molecular design for the therapeutic application of β-CD-threaded PRXs in various metabolic diseases with cholesterol overload or imbalance in the liver.
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Affiliation(s)
- Moe Ohashi
- Department of Organic Biomaterials, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda, Tokyo 101-0062, Japan
| | - Atsushi Tamura
- Department of Organic Biomaterials, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda, Tokyo 101-0062, Japan
| | - Nobuhiko Yui
- Department of Organic Biomaterials, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University (TMDU), 2-3-10 Kanda-Surugadai, Chiyoda, Tokyo 101-0062, Japan
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5
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Xu X. Development of the Sequential Binding Model and Application for Anticooperative Protein Adsorption onto Charged Dendrimers. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:4102-4110. [PMID: 35324205 DOI: 10.1021/acs.langmuir.2c00173] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The Langmuir binding model provides one of the simplest and elegant methods for characterizing an adsorption process. Despite its wide-ranging applications, enormous effort has been spent to further integrate complexity onto the standard Langmuir isotherm to incorporate a wide breadth of binding kinetics with the heterogeneity and cooperative effect among ligands and receptors. Here, we use statistical mechanics as a convenient theoretical framework to depict several adsorption processes on a Langmuir-like description. With regard to the system with a two-component mixture of macromolecular binders, we have derived the two-group sequential binding isotherm as an important extension of the original sequential model with more applications, including systems of non-identical binders. Via comparison of the Langmuir equilibrium with the Boltzmann equilibrium, for the first time the binding free energy defined in the Langmuir-like models can be meaningfully compared with simulations. In a practical example of the adsorption between the lysozyme protein and charged dendrimer, we have demonstrated how the calorimetry data of this system could be interpreted by the binding models described above, with an accurate description of the adsorption process, including the cooperative effect and dendrimer heterogeneity. Using the computer simulation as a benchmark, we also reveal and discuss the strengths and limitations of the proposed binding models. The entire analysis serves as a starting point for extending the standard Langmuir model to access more complicated binding processes.
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Affiliation(s)
- Xiao Xu
- School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, 200 Xiao Ling Wei, Nanjing 210094, P. R. China
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6
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Fleming A, Cursi L, Behan JA, Yan Y, Xie Z, Adumeau L, Dawson KA. Designing Functional Bionanoconstructs for Effective In Vivo Targeting. Bioconjug Chem 2022; 33:429-443. [PMID: 35167255 PMCID: PMC8931723 DOI: 10.1021/acs.bioconjchem.1c00546] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
![]()
The progress achieved
over the last three decades in the field
of bioconjugation has enabled the preparation of sophisticated nanomaterial–biomolecule
conjugates, referred to herein as bionanoconstructs, for a multitude
of applications including biosensing, diagnostics, and therapeutics.
However, the development of bionanoconstructs for the active targeting
of cells and cellular compartments, both in vitro and in vivo, is challenged by the lack of understanding
of the mechanisms governing nanoscale recognition. In this review,
we highlight fundamental obstacles in designing a successful bionanoconstruct,
considering findings in the field of bionanointeractions. We argue
that the biological recognition of bionanoconstructs is modulated
not only by their molecular composition but also by the collective
architecture presented upon their surface, and we discuss fundamental
aspects of this surface architecture that are central to successful
recognition, such as the mode of biomolecule conjugation and nanomaterial
passivation. We also emphasize the need for thorough characterization
of engineered bionanoconstructs and highlight the significance of
population heterogeneity, which too presents a significant challenge
in the interpretation of in vitro and in
vivo results. Consideration of such issues together will
better define the arena in which bioconjugation, in the future, will
deliver functional and clinically relevant bionanoconstructs.
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Affiliation(s)
- Aisling Fleming
- Centre for BioNano Interactions, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Lorenzo Cursi
- Centre for BioNano Interactions, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - James A Behan
- Centre for BioNano Interactions, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Yan Yan
- UCD Conway Institute of Biomolecular and Biomedical Research, School of Biomolecular and Biomedical Science, University College Dublin, Belfield, Dublin 4, Ireland
| | - Zengchun Xie
- Centre for BioNano Interactions, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Laurent Adumeau
- Centre for BioNano Interactions, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
| | - Kenneth A Dawson
- Centre for BioNano Interactions, School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland
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7
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Monticelli SR, Bryk P, Brewer MG, Aguilar HC, Norbury CC, Ward BM. An increase in glycoprotein concentration on extracellular virions dramatically alters vaccinia virus infectivity and pathogenesis without impacting immunogenicity. PLoS Pathog 2021; 17:e1010177. [PMID: 34962975 PMCID: PMC8746760 DOI: 10.1371/journal.ppat.1010177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Revised: 01/10/2022] [Accepted: 12/02/2021] [Indexed: 11/20/2022] Open
Abstract
The extracellular virion (EV) form of Orthopoxviruses is required for cell-to-cell spread and pathogenesis, and is the target of neutralizing antibodies in the protective immune response. EV have a double envelope that contains several unique proteins that are involved in its intracellular envelopment and/or subsequent infectivity. One of these, F13, is involved in both EV formation and infectivity. Here, we report that replacement of vaccinia virus F13L with the molluscum contagiosum virus homolog, MC021L, results in the production of EV particles with significantly increased levels of EV glycoproteins, which correlate with a small plaque phenotype. Using a novel fluorescence-activated virion sorting assay to isolate EV populations based on glycoprotein content we determine that EV containing either higher or lower levels of glycoproteins are less infectious, suggesting that there is an optimal concentration of glycoproteins in the outer envelope that is required for maximal infectivity of EV. This optimal glycoprotein concentration was required for lethality and induction of pathology in a cutaneous model of animal infection, but was not required for induction of a protective immune response. Therefore, our results demonstrate that there is a sensitive balance between glycoprotein incorporation, infectivity, and pathogenesis, and that manipulation of EV glycoprotein levels can produce vaccine vectors in which pathologic side effects are attenuated without a marked diminution in induction of protective immunity.
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Affiliation(s)
- Stephanie R. Monticelli
- Department of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York, United States of America
| | - Peter Bryk
- Department of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York, United States of America
| | - Matthew G. Brewer
- Department of Dermatology, University of Rochester Medical Center, Rochester, New York, United States of America
| | - Hector C. Aguilar
- Department of Microbiology and Immunology, Cornell University, Ithaca, New York, United States of America
| | - Christopher C. Norbury
- Department of Microbiology and Immunology, The Pennsylvania State University College of Medicine, Hershey, Pennsylvania, United States of America
| | - Brian M. Ward
- Department of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York, United States of America
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8
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Jia W, Xie D, Li F, Wu X, Wang R, Yang L, Liu L, Yin W, Chang S. Evaluation the effect of nanoparticles on the structure of aptamers by analyzing the recognition dynamics of aptamer functionalized nanoparticles. Anal Chim Acta 2021; 1183:338976. [PMID: 34627520 DOI: 10.1016/j.aca.2021.338976] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Revised: 08/05/2021] [Accepted: 08/20/2021] [Indexed: 01/31/2023]
Abstract
Aptamer-functionalized nanoparticles have been widely studied as targeted probes in biomedical applications for targeted therapy and imaging. The rigidity of the nanoparticle could stabilized the spatial structure of the aptamer, ensuring the selectivity and affinity for target recognition in the complex environment. The main aim of this article study was to explore the effect of the spatial structure of aptamer in the interaction between aptamer nanoprobes and receptors. We designed and synthesized aptamer functionalized nanoparticle systems with different derivation lengths, and developed a unique kinetic analysis to quantify affinity interactions. The system used silver decahedral nanoparticles (Ag10NPs), which was then chemically functionalized with thrombin (or IgE) aptamers of different tail lengths to produced different nanoprobes, and employed thrombin (or IgE) as target on a surface plasmon resonance (SPR) biosensor to evaluate the binding of these nanoprobes. Kinetic analysis of the SPR binding curve was performed to evaluated the affinity between nanoprobes and targets. Under the premise of eliminating multivalent interactions, we found that the distance between aptamer and nanoparticle could affect the affinity between nanoprobe and target. Furthermore, we found that keeping a certain distance between aptamer and nanoparticle could effectively improved the recognition efficiency of the aptamer nanoprobe and target. It shows that the rigidity of nanomaterials could maintain the spatial structure of the aptamer.
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Affiliation(s)
- Wenchao Jia
- State Environmental Protection Key Laboratory of Environmental Pollution Health Risk Assessment, South China Institute of Environmental Sciences, Ministry of Ecology and Environment, Guangzhou, 510655, China.
| | - Danping Xie
- State Environmental Protection Key Laboratory of Environmental Pollution Health Risk Assessment, South China Institute of Environmental Sciences, Ministry of Ecology and Environment, Guangzhou, 510655, China.
| | - Fangfang Li
- State Environmental Protection Key Laboratory of Environmental Pollution Health Risk Assessment, South China Institute of Environmental Sciences, Ministry of Ecology and Environment, Guangzhou, 510655, China
| | - Xiangzong Wu
- Ocean College, Minjiang University, Fuzhou, 350108, China
| | - Rui Wang
- State Environmental Protection Key Laboratory of Environmental Pollution Health Risk Assessment, South China Institute of Environmental Sciences, Ministry of Ecology and Environment, Guangzhou, 510655, China
| | - Leifeng Yang
- State Environmental Protection Key Laboratory of Environmental Pollution Health Risk Assessment, South China Institute of Environmental Sciences, Ministry of Ecology and Environment, Guangzhou, 510655, China
| | - Lijun Liu
- State Environmental Protection Key Laboratory of Environmental Pollution Health Risk Assessment, South China Institute of Environmental Sciences, Ministry of Ecology and Environment, Guangzhou, 510655, China
| | - Wenhua Yin
- State Environmental Protection Key Laboratory of Environmental Pollution Health Risk Assessment, South China Institute of Environmental Sciences, Ministry of Ecology and Environment, Guangzhou, 510655, China
| | - Sheng Chang
- National Engineering Laboratory for Lake Pollution Control and Ecological Restoration, State Environmental Protection Key Laboratory of Drinking Water Source Protection, Chinese Research Academy of Environmental Sciences, Beijing, 100012, China.
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9
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Multiplexed Affinity Measurements of Extracellular Vesicles Binding Kinetics. SENSORS 2021; 21:s21082634. [PMID: 33918613 PMCID: PMC8069658 DOI: 10.3390/s21082634] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 04/05/2021] [Accepted: 04/07/2021] [Indexed: 12/16/2022]
Abstract
Extracellular vesicles (EVs) have attracted significant attention as impactful diagnostic biomarkers, since their properties are closely related to specific clinical conditions. However, designing experiments that involve EVs phenotyping is usually highly challenging and time-consuming, due to laborious optimization steps that require very long or even overnight incubation durations. In this work, we demonstrate label-free, real-time detection, and phenotyping of extracellular vesicles binding to a multiplexed surface. With the ability for label-free kinetic binding measurements using the Interferometric Reflectance Imaging Sensor (IRIS) in a microfluidic chamber, we successfully optimize the capture reaction by tuning various assay conditions (incubation time, flow conditions, surface probe density, and specificity). A single (less than 1 h) experiment allows for characterization of binding affinities of the EVs to multiplexed probes. We demonstrate kinetic characterization of 18 different probe conditions, namely three different antibodies, each spotted at six different concentrations, simultaneously. The affinity characterization is then analyzed through a model that considers the complexity of multivalent binding of large structures to a carpet of probes and therefore introduces a combination of fast and slow association and dissociation parameters. Additionally, our results confirm higher affinity of EVs to aCD81 with respect to aCD9 and aCD63. Single-vesicle imaging measurements corroborate our findings, as well as confirming the EVs nature of the captured particles through fluorescence staining of the EVs membrane and cargo.
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10
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Erlendsson S, Teilum K. Binding Revisited-Avidity in Cellular Function and Signaling. Front Mol Biosci 2021; 7:615565. [PMID: 33521057 PMCID: PMC7841115 DOI: 10.3389/fmolb.2020.615565] [Citation(s) in RCA: 44] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Accepted: 12/09/2020] [Indexed: 12/16/2022] Open
Abstract
When characterizing biomolecular interactions, avidity, is an umbrella term used to describe the accumulated strength of multiple specific and unspecific interactions between two or more interaction partners. In contrast to the affinity, which is often sufficient to describe monovalent interactions in solution and where the binding strength can be accurately determined by considering only the relationship between the microscopic association and dissociation rates, the avidity is a phenomenological macroscopic parameter linked to several microscopic events. Avidity also covers potential effects of reduced dimensionality and/or hindered diffusion observed at or near surfaces e.g., at the cell membrane. Avidity is often used to describe the discrepancy or the "extra on top" when cellular interactions display binding that are several orders of magnitude stronger than those estimated in vitro. Here we review the principles and theoretical frameworks governing avidity in biological systems and the methods for predicting and simulating avidity. While the avidity and effects thereof are well-understood for extracellular biomolecular interactions, we present here examples of, and discuss how, avidity and the underlying kinetics influences intracellular signaling processes.
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Affiliation(s)
- Simon Erlendsson
- Structural Studies Division, Medical Research Council Laboratory of Molecular Biology, Cambridge, United Kingdom.,Structural Molecular Biology Group, Novo Nordisk Foundation Centre for Protein Research, Faculty of Health and Medical Sciences University of Copenhagen, Copenhagen, Denmark
| | - Kaare Teilum
- Structural Biology and NMR Laboratory and the Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, Copenhagen, Denmark
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11
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Mourtas S, Mavroidi B, Marazioti A, Kannavou M, Sagnou M, Pelecanou M, Antimisiaris SG. Liposomes Decorated with 2-(4'-Aminophenyl)benzothiazole Effectively Inhibit Aβ 1-42 Fibril Formation and Exhibit in Vitro Brain-Targeting Potential. Biomacromolecules 2020; 21:4685-4698. [PMID: 33112137 DOI: 10.1021/acs.biomac.0c00811] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
The potential of 2-benzothiazolyl-decorated liposomes as theragnostic systems for Alzheimer's disease was evaluated in vitro, using PEGylated liposomes that were decorated with two types of 2-benzothiazoles: (i) the unsubstituted 2-benzothiazole (BTH) and (ii) the 2-(4-aminophenyl)benzothiazole (AP-BTH). The lipid derivatives of both BTH-lipid and AP-BTH-lipid were synthesized, for insertion in liposome membranes. Liposomes (LIP) containing three different concentrations of benzothiazoles (5, 10, and 20%) were formulated, and their stability, integrity in the presence of serum proteins, and their ability to inhibit β-amyloid (1-42) (Αβ42) peptide aggregation (by circular dichroism (CD) and thioflavin T (ThT) assay), were evaluated. Additionally, the interaction of some LIP with an in vitro model of the blood-brain barrier (BBB) was studied. All liposome types ranged between 92 and 105 nm, with the exception of the 20% AP-BTH-LIP that were larger (180 nm). The 5 and 10% AP-BTH-LIP were stable when stored at 4 °C for 40 days and demonstrated high integrity in the presence of serum proteins for 7 days at 37 °C. Interestingly, CD experiments revealed that the AP-BTH-LIP substantially interacted with Αβ42 peptides and inhibited fibril formation, as verified by ThT assay, in contrast with the BTH-LIP, which had no effect. The 5 and 10% AP-BTH-LIP were the most effective in inhibiting Αβ42 fibril formation. Surprisingly, the AP-BTH-LIP, especially the 5% ones, demonstrated high interaction with brain endothelial cells and high capability to be transported across the BBB model. Taken together, the current results reveal that the 5% AP-BTH-LIP are of high interest as novel targeted theragnostic systems against AD, justifying further in vitro and in vivo exploitation.
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Affiliation(s)
- Spyridon Mourtas
- Laboratory of Pharmaceutical Technology, Dept. of Pharmacy, School of Health Sciences, University of Patras, Rio Patras 26510, Greece.,Institute of Chemical Engineering Sciences, Foundation for Research and Technology Hellas (FORTH/ICES), Rio Patras 26504, Greece
| | - Barbara Mavroidi
- Institute of Biosciences & Applications, National Center for Scientific Research "Demokritos", Athens 15310, Greece
| | - Antonia Marazioti
- Laboratory of Pharmaceutical Technology, Dept. of Pharmacy, School of Health Sciences, University of Patras, Rio Patras 26510, Greece.,Institute of Chemical Engineering Sciences, Foundation for Research and Technology Hellas (FORTH/ICES), Rio Patras 26504, Greece
| | - Maria Kannavou
- Laboratory of Pharmaceutical Technology, Dept. of Pharmacy, School of Health Sciences, University of Patras, Rio Patras 26510, Greece.,Institute of Chemical Engineering Sciences, Foundation for Research and Technology Hellas (FORTH/ICES), Rio Patras 26504, Greece
| | - Marina Sagnou
- Institute of Biosciences & Applications, National Center for Scientific Research "Demokritos", Athens 15310, Greece
| | - Maria Pelecanou
- Institute of Biosciences & Applications, National Center for Scientific Research "Demokritos", Athens 15310, Greece
| | - Sophia G Antimisiaris
- Laboratory of Pharmaceutical Technology, Dept. of Pharmacy, School of Health Sciences, University of Patras, Rio Patras 26510, Greece.,Institute of Chemical Engineering Sciences, Foundation for Research and Technology Hellas (FORTH/ICES), Rio Patras 26504, Greece
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12
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Jacobi F, Wilms D, Seiler T, Queckbörner T, Tabatabai M, Hartmann L, Schmidt S. Effect of PEGylation on Receptor Anchoring and Steric Shielding at Interfaces: An Adhesion and Surface Plasmon Resonance Study with Precision Polymers. Biomacromolecules 2020; 21:4850-4856. [PMID: 32986404 DOI: 10.1021/acs.biomac.0c01060] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
This study aims at quantifying the steric shielding effect of multivalent glycoconjugates targeting pathogens by blocking their carbohydrate binding sites. Specifically, PEGylated and non-PEGylated glycoconjugates are studied as inhibitors of lectins and bacterial adhesins evaluating the steric repulsion effect of the nonbinding PEG chains. We use the soft colloidal probe (SCP) adhesion assay to monitor the change in the adhesion energy of mannose (Man)-decorated hydrogel particles on a layer of concanavalin A (ConA) in the presence of sequence-defined multivalent glycoconjugate inhibitors over time. The results show that PEGylated glycoconjugates achieve a stronger adhesion inhibition when compared to non-PEGylated glycoconjugates although the dissociation constants (KD) of the PEGgylated compounds to ConA were larger. These results appear in line with Escherichia coli adhesion inhibition assays showing a small increase of bacteria detachment by PEGgylated glycoconjugates compared to non-PEGylated compounds. This suggests that an increase of sterical shielding via PEGylation may help reduce the invasiveness of pathogens even after they have adhered. Adhesion studies based on electrostatic interactions using amine-linked PEG of varying molecular weight confirm that such sterical shielding effect is not limited to carbohydrate-mediated adhesion.
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Affiliation(s)
- Fawad Jacobi
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
| | - Dimitri Wilms
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
| | - Theresa Seiler
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
| | - Torben Queckbörner
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
| | - Monir Tabatabai
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
| | - Laura Hartmann
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
| | - Stephan Schmidt
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, 40225 Dusseldorf, Germany
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13
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Paul TJ, Strzelczyk AK, Feldhof MI, Schmidt S. Temperature-Switchable Glycopolymers and Their Conformation-Dependent Binding to Receptor Targets. Biomacromolecules 2020; 21:2913-2921. [DOI: 10.1021/acs.biomac.0c00676] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Tanja J. Paul
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, Dusseldorf 40225, Germany
| | - Alexander K. Strzelczyk
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, Dusseldorf 40225, Germany
| | - Melina I. Feldhof
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, Dusseldorf 40225, Germany
| | - Stephan Schmidt
- Institute of Organic and Macromolecular Chemistry, Heinrich-Heine-University Düsseldorf, Universitätsstraße 1, Dusseldorf 40225, Germany
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14
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Wang J, Min J, Eghtesadi SA, Kane RS, Chilkoti A. Quantitative Study of the Interaction of Multivalent Ligand-Modified Nanoparticles with Breast Cancer Cells with Tunable Receptor Density. ACS NANO 2020; 14:372-383. [PMID: 31899613 DOI: 10.1021/acsnano.9b05689] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Multivalent nanoparticles that target a cell surface receptor that is overexpressed by cancer cells are a promising delivery system for cancer therapy. However, the impact of the receptor density and nanoparticle ligand valency on the cell uptake has not been studied in a system where both variables can be systematically tuned over a wide range. To address this lacuna, we report cell-uptake studies on a genetically engineered breast cancer cell line with tunable ErbB2 expression by a polypeptide micelle with tunable ligand valency. We examined the uptake of ErbB2-targeting micelles at 5 ligand densities and 11 receptor densities. We identified a matching pattern between receptors and ligands in which a receptor-to-ligand density ratio of 0.7-4.5 and a minimum of ∼1.6 bonds are required to initiate receptor-mediated endocytosis. Lower and upper limits of receptor density in the cell-uptake profile suggested a standard by which to categorize breast cancer patients as ErbB2-low, ErbB2-medium, and ErbB2-high, with each group expected to respond differently to multivalent therapeutic nanoparticles. At ErbB2-medium and ErbB2-high levels, increasing the ligand valency to 40-valent ErbB2-targeting peptides for a 20 nm radius nanoparticle accelerated the cell uptake, suggesting that the use of nanoparticles with high ligand valency for drug delivery will greatly benefit patients in these two groups. This study advances our understanding of how to rationally optimize nanotechnology for targeted drug delivery.
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Affiliation(s)
- Jing Wang
- Department of Biomedical Engineering , Duke University , Durham , North Carolina 27708 , United States
| | - Junseon Min
- Department of Biomedical Engineering , Duke University , Durham , North Carolina 27708 , United States
| | - Seyed Ali Eghtesadi
- Department of Biomedical Engineering , Duke University , Durham , North Carolina 27708 , United States
| | - Ravi S Kane
- School of Chemical and Biomolecular Engineering , Georgia Institute of Technology , Atlanta , Georgia 30332 , United States
| | - Ashutosh Chilkoti
- Department of Biomedical Engineering , Duke University , Durham , North Carolina 27708 , United States
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15
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Jia T, Ciccione J, Jacquet T, Maurel M, Montheil T, Mehdi A, Martinez J, Eymin B, Subra G, Coll JL. The presence of PEG on nanoparticles presenting the c[RGDfK]- and/or ATWLPPR peptides deeply affects the RTKs-AKT-GSK3β-eNOS signaling pathway and endothelial cells survival. Int J Pharm 2019; 568:118507. [PMID: 31299336 DOI: 10.1016/j.ijpharm.2019.118507] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Revised: 07/04/2019] [Accepted: 07/08/2019] [Indexed: 12/17/2022]
Abstract
Covering the surface of a nanoparticle with polyethylene glycol (PEG) is a common way to prevent non-specific interactions but how its presence impacts on the activity of targeting ligands is still poorly documented. We synthesized a set of 9 silica nanoparticles grafted with c[RGDfK]-, a peptide targeting integrin αvß3 (cRGD), and/or with ATWLPPR, an anti-neuropilin 1 peptide (ATW). We then added various PEGs, and studied NPs binding on primary endothelial cells, the downstream activated signaling pathways and the impact on apoptosis. Our results show that the presence of PEG2000 on cRGD/ATW nanoparticles moderately improves cell binding but induces a 6000 times augmentation of AKT-dependent cell response due to the recruitment of other Receptor Tyrosine Kinases. Augmenting the length of the spacer that separates the peptides from the silica (using PEG3000) mainly resulted in a loss of specificity. Finally, the PEG-mediated hyperactivation of AKT did not protect endothelial cell from dying in the absence of serum, while its moderate activation obtained without PEG did. Finally, PEGylation of cRGD/ATW-NPs can generate nanoparticles with potent capacities to activate the AKT-GSK3β-eNOS cascade and to affect the resistance of endothelial cells to apoptosis. Thus, the impact of PEGylation should be precisely considered in order to avoid the apparition of counter-productive biological responses.
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Affiliation(s)
- Tao Jia
- INSERM U1209, CNRS UMR 5309, Institute for Advanced Biosciences, F-38600 La Tronche, France; Université. Grenoble Alpes, Institute for Advanced Biosciences, F-38600 La Tronche, France
| | - Jéremy Ciccione
- IBMM Université de Montpellier, CNRS, ENSCM, Montpellier, France; ICGM Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Thibault Jacquet
- Université. Grenoble Alpes, Institute for Advanced Biosciences, F-38600 La Tronche, France
| | - Manon Maurel
- IBMM Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Titouan Montheil
- IBMM Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Ahmad Mehdi
- ICGM Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Jean Martinez
- IBMM Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Béatrice Eymin
- INSERM U1209, CNRS UMR 5309, Institute for Advanced Biosciences, F-38600 La Tronche, France; Université. Grenoble Alpes, Institute for Advanced Biosciences, F-38600 La Tronche, France
| | - Gilles Subra
- IBMM Université de Montpellier, CNRS, ENSCM, Montpellier, France
| | - Jean-Luc Coll
- INSERM U1209, CNRS UMR 5309, Institute for Advanced Biosciences, F-38600 La Tronche, France; Université. Grenoble Alpes, Institute for Advanced Biosciences, F-38600 La Tronche, France.
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16
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Lanfranco R, Jana PK, Tunesi L, Cicuta P, Mognetti BM, Di Michele L, Bruylants G. Kinetics of Nanoparticle-Membrane Adhesion Mediated by Multivalent Interactions. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2019; 35:2002-2012. [PMID: 30636419 DOI: 10.1021/acs.langmuir.8b02707] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Multivalent adhesive interactions mediated by a large number of ligands and receptors underpin many biological processes, including cell adhesion and the uptake of particles, viruses, parasites, and nanomedical vectors. In materials science, multivalent interactions between colloidal particles have enabled unprecedented control over the phase behavior of self-assembled materials. Theoretical and experimental studies have pinpointed the relationship between equilibrium states and microscopic system parameters such as the ligand-receptor binding strength and their density. In regimes of strong interactions, however, kinetic factors are expected to slow down equilibration and lead to the emergence of long-lived out-of-equilibrium states that may significantly influence the outcome of self-assembly experiments and the adhesion of particles to biological membranes. Here we experimentally investigate the kinetics of adhesion of nanoparticles to biomimetic lipid membranes. Multivalent interactions are reproduced by strongly interacting DNA constructs, playing the role of both ligands and receptors. The rate of nanoparticle adhesion is investigated as a function of the surface density of membrane-anchored receptors and the bulk concentration of nanoparticles and is observed to decrease substantially in regimes where the number of available receptors is limited compared to the overall number of ligands. We attribute such peculiar behavior to the rapid sequestration of available receptors after initial nanoparticle adsorption. The experimental trends and the proposed interpretation are supported by numerical simulations.
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Affiliation(s)
- Roberta Lanfranco
- Biological and Soft Systems, Cavendish Laboratory , University of Cambridge , JJ Thomson Avenue , Cambridge CB3 0HE , United Kingdom
- Université Libre de Bruxelles (ULB) , Engineering of Molecular NanoSystems , 50 av. F.D. Roosevelt , 1050 Brussels , Belgium
| | - Pritam Kumar Jana
- Université Libre de Bruxelles (ULB) , Interdisciplinary Center for Nonlinear Phenomena and Complex Systems, Campus Plaine , CP 231, Blvd. du Triomphe , B-1050 Brussels , Belgium
| | - Lucia Tunesi
- Biological and Soft Systems, Cavendish Laboratory , University of Cambridge , JJ Thomson Avenue , Cambridge CB3 0HE , United Kingdom
| | - Pietro Cicuta
- Biological and Soft Systems, Cavendish Laboratory , University of Cambridge , JJ Thomson Avenue , Cambridge CB3 0HE , United Kingdom
| | - Bortolo Matteo Mognetti
- Université Libre de Bruxelles (ULB) , Interdisciplinary Center for Nonlinear Phenomena and Complex Systems, Campus Plaine , CP 231, Blvd. du Triomphe , B-1050 Brussels , Belgium
| | - Lorenzo Di Michele
- Biological and Soft Systems, Cavendish Laboratory , University of Cambridge , JJ Thomson Avenue , Cambridge CB3 0HE , United Kingdom
| | - Gilles Bruylants
- Université Libre de Bruxelles (ULB) , Engineering of Molecular NanoSystems , 50 av. F.D. Roosevelt , 1050 Brussels , Belgium
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17
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Tjandra KC, Thordarson P. Multivalency in Drug Delivery–When Is It Too Much of a Good Thing? Bioconjug Chem 2019; 30:503-514. [DOI: 10.1021/acs.bioconjchem.8b00804] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Kristel C. Tjandra
- School of Chemistry, the Australian Centre for Nanomedicine and the ARC Centre of Excellence in Convergent Bio-Nano Science and Technology, The University of New South Wales, Sydney, New South Wales 2052, Australia
| | - Pall Thordarson
- School of Chemistry, the Australian Centre for Nanomedicine and the ARC Centre of Excellence in Convergent Bio-Nano Science and Technology, The University of New South Wales, Sydney, New South Wales 2052, Australia
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18
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Ermini ML, Chadtová Song X, Špringer T, Homola J. Peptide Functionalization of Gold Nanoparticles for the Detection of Carcinoembryonic Antigen in Blood Plasma via SPR-Based Biosensor. Front Chem 2019; 7:40. [PMID: 30778384 PMCID: PMC6369193 DOI: 10.3389/fchem.2019.00040] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2018] [Accepted: 01/14/2019] [Indexed: 12/20/2022] Open
Abstract
Nanoparticles functionalized with specific biological recognition molecules play a major role for sensor response enhancement in surface plasmon resonance (SPR) based biosensors. The functionalization procedure of such nanoparticles is crucial, since it influences their interactions with the environment and determines their applicability to biomolecular detection in complex matrices. In this work we show how the ζ-potential (Zpot) of bio-functionalized gold spherical NPs (Bio-NPs) is related to the SPR sensor response enhancement of an immune-sandwich-assay for the detection of the carcinoembryonic antigen (CEA), a cancer marker for colorectal carcinomas. In particular, we prepare bio-functional nanoparticles by varying the amount of peptide (either streptavidin or antibody against CEA) bound on their surface. Specific and non-specific sensor responses, reproducibility, and colloidal stability of those bio-functional nanoparticles are measured via SPR and compared to ζ-potential values. Those parameters are first measured in buffer solution, then measured again when the surface of the biosensor is exposed to blood plasma, and finally when the nanoparticles are immersed in blood plasma and flowed overnight on the biosensor. We found that ζ-potential values can guide the design of bio-functional NPs with improved binding efficiency and reduced non-specific sensor response, suitable reproducibility and colloidal stability, even in complex matrixes like blood plasma.
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Affiliation(s)
- Maria Laura Ermini
- Institute of Photonics and Electronics, Czech Academy of Sciences, Prague, Czechia
| | - Xue Chadtová Song
- Institute of Photonics and Electronics, Czech Academy of Sciences, Prague, Czechia
| | - Tomáš Špringer
- Institute of Photonics and Electronics, Czech Academy of Sciences, Prague, Czechia
| | - Jiří Homola
- Institute of Photonics and Electronics, Czech Academy of Sciences, Prague, Czechia
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19
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Sun A, Lai Z, Zhao M, Mu L, Hu X. Native nanodiscs from blood inhibit pulmonary fibrosis. Biomaterials 2019; 192:51-61. [DOI: 10.1016/j.biomaterials.2018.10.045] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2018] [Revised: 09/29/2018] [Accepted: 10/28/2018] [Indexed: 12/27/2022]
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20
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Du H, Hu X, Duan H, Yu L, Qu F, Huang Q, Zheng W, Xie H, Peng J, Tuo R, Yu D, Lin Y, Li W, Zheng Y, Fang X, Zou Y, Wang H, Wang M, Weiss PS, Yang Y, Wang C. Principles of Inter-Amino-Acid Recognition Revealed by Binding Energies between Homogeneous Oligopeptides. ACS CENTRAL SCIENCE 2019; 5:97-108. [PMID: 30693329 PMCID: PMC6346390 DOI: 10.1021/acscentsci.8b00723] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2018] [Indexed: 05/27/2023]
Abstract
We have determined the interaction strengths of the common naturally occurring amino acids using a complete binding affinity matrix of 20 × 20 pairs of homo-octapeptides consisting of the 20 common amino acids between stationary and mobile states. We used a bead-based fluorescence assay for these measurements. The results provide a basis for analyzing specificity, polymorphisms, and selectivity of inter-amino-acid interactions. Comparative analyses of the binding energies, i.e., the free energies of association (ΔG A), reveal contributions assignable to both main-chain-related and side-chain-related interactions originating from the chemical structures of these 20 common amino acids. Side-chain-side-chain and side-chain-main-chain interactions are found to be pronounced in an identified set of amino acid pairs that determine the basis of inter-amino-acid recognition.
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Affiliation(s)
- Huiwen Du
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Xiaoyu Hu
- College
of Mathematical Sciences, University of
Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Hongyang Duan
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Lanlan Yu
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Fuyang Qu
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Qunxing Huang
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Wangshu Zheng
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Hanyi Xie
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Jiaxi Peng
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Rui Tuo
- Academy
of Mathematics and Systems Science, Chinese
Academy of Sciences, Beijing 100190, P. R. China
| | - Dan Yu
- Academy
of Mathematics and Systems Science, Chinese
Academy of Sciences, Beijing 100190, P. R. China
| | - Yuchen Lin
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Wenzhe Li
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Yongfang Zheng
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Xiaocui Fang
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Yimin Zou
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Huayi Wang
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Mengting Wang
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Paul S. Weiss
- California
NanoSystems Institute, Department of Chemistry and Biochemistry, and
Department of Materials Science and Engineering, University of California, Los Angeles, Los Angeles, California 90095-7227, United States
| | - Yanlian Yang
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
| | - Chen Wang
- Key
Laboratory for Biomedical Effects of Nanomaterials and Nanosafety
(Chinese Academy of Sciences), and Key Laboratory of Standardization
and Measurement for Nanotechnology (Chinese Academy of Sciences), National Center for Nanoscience and Technology, Beijing 100190, P. R. China
- CAS
Center for Excellence in Brain Science, Chinese Academy of Sciences, Beijing 100101, P. R. China
- University
of Chinese Academy of Sciences, Beijing 100049, P. R.
China
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21
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Choi H, Jung Y. Applying Multivalent Biomolecular Interactions for Biosensors. Chemistry 2018; 24:19103-19109. [DOI: 10.1002/chem.201801408] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Revised: 06/27/2018] [Indexed: 12/29/2022]
Affiliation(s)
- Hyeongjoo Choi
- Department of ChemistryKorea Advanced Institute of Science and Technology Daejeon 34141 Korea
| | - Yongwon Jung
- Department of ChemistryKorea Advanced Institute of Science and Technology Daejeon 34141 Korea
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22
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Yoon HR, Choi H, Choi YA, Kim JA, Jung J, Kim HM, Jung Y. Fabrication of Oligomeric Avidin Scaffolds for Valency-Controlled Surface Display of Functional Ligands. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201805749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Hye Ryeon Yoon
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Korea
| | - Hyeongjoo Choi
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Korea
| | - Yoon-Aa Choi
- Bionano Health Guard Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
| | - Jung A. Kim
- Graduate School of Nanoscience and Technology; KAIST; Korea
| | - Juyeon Jung
- Bionano Health Guard Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
- Hazards Monitoring Bionano Research Center; KRIBB; Daejeon 34141 Korea
- Nanobiotechnology Major; KRIBB School of Engineering; UST; Daejeon 34113 Korea
| | - Ho Min Kim
- Graduate School of Medical Science and Engineering; KAIST; Korea
| | - Yongwon Jung
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Korea
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23
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Jia W, Lu Z, Yang H, Li H, Xu D. Elimination terminal fixed region screening and high-throughput kinetic determination of aptamer for lipocalin-1 by surface plasmon resonance imaging. Anal Chim Acta 2018; 1043:158-166. [PMID: 30392664 DOI: 10.1016/j.aca.2018.09.018] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Revised: 08/31/2018] [Accepted: 09/10/2018] [Indexed: 12/31/2022]
Abstract
A highly efficient method for eliminating terminal fixed region interference of aptamer with real-time monitoring of the SELEX process was described by silver decahedra nanoparticles probe (Ag10-A10-RP(15)) capture and block the terminal fixed region candidates. A microarray chip was developed by immobilization of target protein (lipocalin-1 (LCN-1)) and control proteins (Human serum albumin (HSA), Bovine serum albumin (BSA) and Holo-transferrin) on the biochip surface. The nucleic acid pool was first incubated with target and then captured by hybridization with Ag10-A10-RP(15). The work allows rapid screening of aptamer elimination fixed-region interference, and the kinetic constants of candidate sequences can be quickly determined using SPRi technology. Eventually, ten aptamers with high affinity and specific for LCN-1 after only fifth-round of selection was acquired.
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Affiliation(s)
- Wenchao Jia
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, China
| | - Zhongyi Lu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, China
| | - Hao Yang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, China
| | - Hui Li
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, China
| | - Danke Xu
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, China.
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24
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Yoon HR, Choi H, Choi YA, Kim JA, Jung J, Kim HM, Jung Y. Fabrication of Oligomeric Avidin Scaffolds for Valency-Controlled Surface Display of Functional Ligands. Angew Chem Int Ed Engl 2018; 57:12410-12414. [DOI: 10.1002/anie.201805749] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Revised: 07/14/2018] [Indexed: 02/06/2023]
Affiliation(s)
- Hye Ryeon Yoon
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Korea
| | - Hyeongjoo Choi
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Korea
| | - Yoon-Aa Choi
- Bionano Health Guard Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
| | - Jung A. Kim
- Graduate School of Nanoscience and Technology; KAIST; Korea
| | - Juyeon Jung
- Bionano Health Guard Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
- Hazards Monitoring Bionano Research Center; KRIBB; Daejeon 34141 Korea
- Nanobiotechnology Major; KRIBB School of Engineering; UST; Daejeon 34113 Korea
| | - Ho Min Kim
- Graduate School of Medical Science and Engineering; KAIST; Korea
| | - Yongwon Jung
- Department of Chemistry; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 Korea
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25
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Lira AL, Ferreira RS, Torquato RJS, Zhao H, Oliva MLV, Hassan SA, Schuck P, Sousa AA. Binding kinetics of ultrasmall gold nanoparticles with proteins. NANOSCALE 2018; 10:3235-3244. [PMID: 29383361 PMCID: PMC5842697 DOI: 10.1039/c7nr06810g] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Synthetic ultrasmall nanoparticles (NPs) can be designed to interact with biologically active proteins in a controlled manner. However, the rational design of NPs requires a clear understanding of their interactions with proteins and the precise molecular mechanisms that lead to association/dissociation in biological media. Although much effort has been devoted to the study of the kinetics mechanism of protein corona formation on large NPs, the nature of NP-protein interactions in the ultrasmall regime is radically different and poorly understood. Using a combination of experimental and computational approaches, we studied the interactions of a model protein, CrataBL, with ultrasmall gold NPs passivated with p-mercaptobenzoic acid (AuMBA) and glutathione (AuGSH). We have identified this system as an ideal in vitro platform to understand the dependence of binding affinity and kinetics on NP surface chemistry. We found that the structural and chemical complexity of the passivating NP layer leads to quite different association kinetics, from slow and reaction-limited (AuGSH) to fast and diffusion-limited (AuMBA). We also found that the otherwise weak and slow AuGSH-protein interactions measured in buffer solution are enhanced in macromolecular crowded solutions. These findings advance our mechanistic understanding of biomimetic NP-protein interactions in the ultrasmall regime and have implications for the design and use of NPs in the crowded conditions common to all biological media.
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Affiliation(s)
- André L Lira
- Department of Biochemistry, Federal University of São Paulo, São Paulo, SP, Brazil.
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26
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Deci MB, Liu M, Dinh QT, Nguyen J. Precision engineering of targeted nanocarriers. WILEY INTERDISCIPLINARY REVIEWS-NANOMEDICINE AND NANOBIOTECHNOLOGY 2018; 10:e1511. [PMID: 29436157 DOI: 10.1002/wnan.1511] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Revised: 12/11/2017] [Accepted: 01/16/2018] [Indexed: 12/15/2022]
Abstract
Since their introduction in 1980, the number of advanced targeted nanocarrier systems has grown considerably. Nanocarriers capable of targeting single receptors, multiple receptors, or multiple epitopes have all been used to enhance delivery efficiency and selectivity. Despite tremendous progress, preclinical studies and clinically translatable nanotechnology remain disconnected. The disconnect in targeting efficacy may stem from poorly-understood factors such as receptor clustering, spatial control of targeting ligands, ligand mobility, and ligand architecture. Further, the relationship between receptor distribution and ligand architecture remains elusive. Traditionally, targeted nanocarriers were engineered assuming a "static" target. However, it is becoming increasingly clear that receptor expression patterns change in response to external stimuli and disease progression. Here, we discuss how cutting-edge technologies will enable a better characterization of the spatiotemporal distribution of membrane receptors and their clustering. We further describe how this will enable the design of new nanocarriers that selectively target the site of disease. Ultimately, we explore how the precision engineering of targeted nanocarriers that adapt to receptor dynamics will have the potential to drive nanotechnology to the forefront of therapy and make targeted nanomedicine a clinical reality. This article is categorized under: Therapeutic Approaches and Drug Discovery > Emerging Technologies Nanotechnology Approaches to Biology > Nanoscale Systems in Biology Biology-Inspired Nanomaterials > Lipid-Based Structures Biology-Inspired Nanomaterials > Protein and Virus-Based Structures.
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Affiliation(s)
- Michael B Deci
- Department of Pharmaceutical Sciences, School of Pharmacy, University at Buffalo, The State University of New York, Buffalo, New York
| | - Maixian Liu
- Department of Pharmaceutical Sciences, School of Pharmacy, University at Buffalo, The State University of New York, Buffalo, New York
| | - Quoc Thai Dinh
- Department of Experimental Pneumology and Allergology, Saarland University Faculty of Medicine, Homburg/Saar, Germany
| | - Juliane Nguyen
- Department of Pharmaceutical Sciences, School of Pharmacy, University at Buffalo, The State University of New York, Buffalo, New York
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27
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Hortigüela V, Larrañaga E, Cutrale F, Seriola A, García-Díaz M, Lagunas A, Andilla J, Loza-Alvarez P, Samitier J, Ojosnegros S, Martínez E. Nanopatterns of Surface-Bound EphrinB1 Produce Multivalent Ligand-Receptor Interactions That Tune EphB2 Receptor Clustering. NANO LETTERS 2018; 18:629-637. [PMID: 29243484 DOI: 10.1021/acs.nanolett.7b04904] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Here we present a nanostructured surface able to produce multivalent interactions between surface-bound ephrinB1 ligands and membrane EphB2 receptors. We created ephrinB1 nanopatterns of regular size (<30 nm in diameter) by using self-assembled diblock copolymers. Next, we used a statistically enhanced version of the Number and Brightness technique, which can discriminate-with molecular sensitivity-the oligomeric states of diffusive species to quantitatively track the EphB2 receptor oligomerization process in real time. The results indicate that a stimulation using randomly distributed surface-bound ligands was not sufficient to fully induce receptor aggregation. Conversely, when nanopatterned onto our substrates, the ligands effectively induced a strong receptor oligomerization. This presentation of ligands improved the clustering efficiency of conventional ligand delivery systems, as it required a 9-fold lower ligand surface coverage and included faster receptor clustering kinetics compared to traditional cross-linked ligands. In conclusion, nanostructured diblock copolymers constitute a novel strategy to induce multivalent ligand-receptor interactions leading to a stronger, faster, and more efficient receptor activation, thus providing a useful strategy to precisely tune and potentiate receptor responses. The efficiency of these materials at inducing cell responses can benefit applications such as the design of new bioactive materials and drug-delivery systems.
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Affiliation(s)
- Verónica Hortigüela
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08028, Spain
| | - Enara Larrañaga
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08028, Spain
| | - Francesco Cutrale
- Translational Imaging Center, Molecular and Computational Biology, University of Southern California , Los Angeles, California 90089, United States
| | - Anna Seriola
- Center of Regenerative Medicine in Barcelona (CMRB) , Hospital Duran i Reynals, Hospitalet de Llobregat 08908, Spain
| | - María García-Díaz
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08028, Spain
| | - Anna Lagunas
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08028, Spain
- Centro de Investigación Biomédica en Red (CIBER) , Madrid 28029, Spain
| | - Jordi Andilla
- ICFO-Institut de Ciències Fotòniques, The Barcelona Institute of Science and Technology , Castelldefels, Barcelona 08860, Spain
| | - Pablo Loza-Alvarez
- ICFO-Institut de Ciències Fotòniques, The Barcelona Institute of Science and Technology , Castelldefels, Barcelona 08860, Spain
| | - Josep Samitier
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08028, Spain
- Centro de Investigación Biomédica en Red (CIBER) , Madrid 28029, Spain
- Department of Engineering: Electronics, University of Barcelona (UB) , Barcelona 08028, Spain
| | - Samuel Ojosnegros
- Center of Regenerative Medicine in Barcelona (CMRB) , Hospital Duran i Reynals, Hospitalet de Llobregat 08908, Spain
| | - Elena Martínez
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology (BIST) , Barcelona 08028, Spain
- Centro de Investigación Biomédica en Red (CIBER) , Madrid 28029, Spain
- Department of Engineering: Electronics, University of Barcelona (UB) , Barcelona 08028, Spain
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28
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Wong PT, Tang S, Cannon J, Chen D, Sun R, Lee J, Phan J, Tao K, Sun K, Chen B, Baker JR, Choi SK. Photocontrolled Release of Doxorubicin Conjugated through a Thioacetal Photocage in Folate-Targeted Nanodelivery Systems. Bioconjug Chem 2017; 28:3016-3028. [PMID: 29148732 DOI: 10.1021/acs.bioconjchem.7b00614] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Despite their proven ability for precise and targeted release, nanoplatform systems for photocontrolled delivery often face formidable synthetic challenges, in part due to the paucity of advanced linker strategies. Here, we report on a novel linker strategy using a thioacetal ortho-nitrobenzaldehyde (TNB) cage, demonstrating its application for delivery of doxorubicin (Dox) in two nanoscale systems. This photocleavable linker, TNB(OH), which presents two identical arms, each terminated with a hydroxyl functionality, was prepared in a single step from 6-nitroveratraldehyde. TNB(OH) was used to cross-link Dox to a folate receptor (FAR)-targeting poly(amidoamine) dendrimer conjugate G5(FA)n=5.4(Dox)m=5.1, and also used to prepare an upconversion nanocrystal (UCN) conjugate, UCN-PPIX@(Dox)(G5FA), a larger core/shell nanostructure. In this core/shell nanostructure, the UCN core emits UV and visible light luminescence upon near-infrared (NIR) excitation, allowing for the photocleavage of the TNB linker as well as the photostimulation of protoporphyrin IX (PPIX) coupled as a cytotoxic photosensitizer. Drug-release experiments performed in aqueous solutions with long-wavelength ultraviolet A (UVA) light showed that Dox release occurred rapidly from its TNB linked form or from its dendrimer conjugated form with comparable decay kinetics. Cellular toxicity studies in FAR-overexpressing KB carcinoma cells demonstrated that each nanoconjugate lacked intrinsic cytotoxicity until exposed to UVA or NIR (980 nm) (for the UCN nanoconjugate), which resulted in induction of potent cytotoxicity. In summary, this new TNB strategy offers synthetic convenience in drug conjugation chemistry with the ability for the temporal control of drug activation at the delivery site.
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Affiliation(s)
| | | | | | - Dexin Chen
- State Key Laboratory of Metal Matrix Composites, School of Materials Science and Engineering, Shanghai Jiao Tong University , Shanghai 200240, People's Republic of China
| | | | | | | | - Ke Tao
- State Key Laboratory of Metal Matrix Composites, School of Materials Science and Engineering, Shanghai Jiao Tong University , Shanghai 200240, People's Republic of China
| | - Kang Sun
- State Key Laboratory of Metal Matrix Composites, School of Materials Science and Engineering, Shanghai Jiao Tong University , Shanghai 200240, People's Republic of China
| | - Biqiong Chen
- School of Mechanical and Aerospace Engineering, Queen's University Belfast , Stranmillis Road, Belfast BT9 5AH, United Kingdom
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29
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Kim JY, Zeng ZC, Xiao L, Schultz ZD. Elucidating Protein/Ligand Recognition with Combined Surface Plasmon Resonance and Surface Enhanced Raman Spectroscopy. Anal Chem 2017; 89:13074-13081. [PMID: 29135238 DOI: 10.1021/acs.analchem.7b04246] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
The ability to distinguish between specific and nonspecific binding is important for assessing the interactions between protein receptors and ligands. Surface plasmon resonance (SPR) spectroscopy is an advanced tool to measure binding events, yet the ability to distinguish between specific and nonspecific binding remains a limitation. To address this problem, we use SPR spectroscopy correlated with surface enhanced Raman scattering (SERS). The chemical information present in SERS spectra provides insight into the molecular interactions between functionalized nanoparticles and proteins, which are not detectable by SPR alone. Using a custom instrument with the Kretschmann configuration, we successfully demonstrate simultaneous affinity and the chemical characterization of streptavidin-functionalized gold nanoparticles (STV-NPs) binding to biotin immobilized on a gold film in both air and flowing phosphate buffered saline (PBS). The SPR performance is consistent with that of previous reports. The association constant (KA) for streptavidin/biotin and STV-NPs/biotin interactions observed (2 ± 1 × 107 M-1 and 2.4 ± 0.3 × 1010 M-1, respectively) agree with literature values and show a strong avidity effect associated with the STV-NPs. The SERS scattering from STV-NPs is excited by the surface plasmon polariton and collected from an objective lens mounted over the fluidic channel. The SERS spectra are recorded simultaneously with the SPR sensorgram, and the detected Raman bands provide chemical insight into the binding event. Multivariate curve resolution analysis of the spectra can differentiate specific from nonspecific binding. This label-free, real time, and surface sensitive detection method provides chemical information to protein/ligand binding affinity measurements.
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Affiliation(s)
- Ju-Young Kim
- Department of Chemistry and Biochemistry, University of Notre Dame , 140 McCourtney Hall, Notre Dame, Indiana 46556, United States
| | - Zhi-Cong Zeng
- Department of Chemistry and Biochemistry, University of Notre Dame , 140 McCourtney Hall, Notre Dame, Indiana 46556, United States
| | - Lifu Xiao
- Department of Chemistry and Biochemistry, University of Notre Dame , 140 McCourtney Hall, Notre Dame, Indiana 46556, United States
| | - Zachary D Schultz
- Department of Chemistry and Biochemistry, University of Notre Dame , 140 McCourtney Hall, Notre Dame, Indiana 46556, United States
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30
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Lee JM, Hwang A, Choi H, Jo Y, Kim B, Kang T, Jung Y. A Multivalent Structure-Specific RNA Binder with Extremely Stable Target Binding but Reduced Interaction with Nonspecific RNAs. Angew Chem Int Ed Engl 2017; 56:15998-16002. [DOI: 10.1002/anie.201709153] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2017] [Revised: 10/01/2017] [Indexed: 01/08/2023]
Affiliation(s)
- Jeong Min Lee
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Ahreum Hwang
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
- Hazards Monitoring Bionano Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
| | - Hyeongjoo Choi
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Yongsang Jo
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Bongsoo Kim
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Taejoon Kang
- Hazards Monitoring Bionano Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
- BioNano Health Guard Research Center, KRIBB, Daejeon 34141 (Korea); Department of Nanobiotechnology; KRIBB School of Biotechnology, UST; Daejeon 34113 Korea
| | - Yongwon Jung
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
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31
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Lee JM, Hwang A, Choi H, Jo Y, Kim B, Kang T, Jung Y. A Multivalent Structure-Specific RNA Binder with Extremely Stable Target Binding but Reduced Interaction with Nonspecific RNAs. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201709153] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Jeong Min Lee
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Ahreum Hwang
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
- Hazards Monitoring Bionano Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
| | - Hyeongjoo Choi
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Yongsang Jo
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Bongsoo Kim
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
| | - Taejoon Kang
- Hazards Monitoring Bionano Research Center; Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon 34141 Korea
- BioNano Health Guard Research Center, KRIBB, Daejeon 34141 (Korea); Department of Nanobiotechnology; KRIBB School of Biotechnology, UST; Daejeon 34113 Korea
| | - Yongwon Jung
- Department of Chemistry; Korea Advanced Institute of Science and Technology; Daejeon 34141 Korea
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32
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Li MH, Zong H, Leroueil PR, Choi SK, Baker JR. Ligand Characteristics Important to Avidity Interactions of Multivalent Nanoparticles. Bioconjug Chem 2017; 28:1649-1657. [PMID: 28398751 DOI: 10.1021/acs.bioconjchem.7b00098] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Multivalent interactions involve the engagement of multiple ligand-receptor pairs and are important in synthetic biology as design paradigms for targeted nanoparticles (NPs). However, little is known about the specific ligand parameters important to multivalent interactions. We employed a series of oligonucleotides as ligands conjugated to dendrimers as nanoparticles, and used complementary oligonucleotides on a functionalized SPR surface to measure binding. We compared the effect of ligand affinity to ligand number on the avidity characteristics of functionalized NPs. Changing the ligand affinity, either by changing the temperature of the system or by substitution noncomplementary base pairs into the oligonucleotides, had little effect on multivalent interaction; the overall avidity, number of ligands required for avidity per particle, and the number of particles showing avidity did not significantly change. We then made NP conjugates with the same oligonucleotide using an efficient copper-free click chemistry that resulted in essentially all of the NPs in the population exceeding the threshold ligand value. The particles exceeding the threshold ligand number again demonstrated high avidity interactions. This work validates the concept of a threshold ligand valence and suggests that the number of ligands per nanoparticle is the defining factor in achieving high avidity interactions.
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Affiliation(s)
- Ming-Hsin Li
- Department of Biomedical Engineering, ‡Michigan Nanotechnology Institute for Medicine and Biological Sciences, and §Department of Internal Medicine, University of Michigan , Ann Arbor, Michigan 48109, United States
| | - Hong Zong
- Department of Biomedical Engineering, ‡Michigan Nanotechnology Institute for Medicine and Biological Sciences, and §Department of Internal Medicine, University of Michigan , Ann Arbor, Michigan 48109, United States
| | - Pascale R Leroueil
- Department of Biomedical Engineering, ‡Michigan Nanotechnology Institute for Medicine and Biological Sciences, and §Department of Internal Medicine, University of Michigan , Ann Arbor, Michigan 48109, United States
| | - Seok Ki Choi
- Department of Biomedical Engineering, ‡Michigan Nanotechnology Institute for Medicine and Biological Sciences, and §Department of Internal Medicine, University of Michigan , Ann Arbor, Michigan 48109, United States
| | - James R Baker
- Department of Biomedical Engineering, ‡Michigan Nanotechnology Institute for Medicine and Biological Sciences, and §Department of Internal Medicine, University of Michigan , Ann Arbor, Michigan 48109, United States
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33
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Zhang D, Gökce B, Barcikowski S. Laser Synthesis and Processing of Colloids: Fundamentals and Applications. Chem Rev 2017; 117:3990-4103. [PMID: 28191931 DOI: 10.1021/acs.chemrev.6b00468] [Citation(s) in RCA: 382] [Impact Index Per Article: 54.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Driven by functionality and purity demand for applications of inorganic nanoparticle colloids in optics, biology, and energy, their surface chemistry has become a topic of intensive research interest. Consequently, ligand-free colloids are ideal reference materials for evaluating the effects of surface adsorbates from the initial state for application-oriented nanointegration purposes. After two decades of development, laser synthesis and processing of colloids (LSPC) has emerged as a convenient and scalable technique for the synthesis of ligand-free nanomaterials in sealed environments. In addition to the high-purity surface of LSPC-generated nanoparticles, other strengths of LSPC include its high throughput, convenience for preparing alloys or series of doped nanomaterials, and its continuous operation mode, suitable for downstream processing. Unscreened surface charge of LSPC-synthesized colloids is the key to achieving colloidal stability and high affinity to biomolecules as well as support materials, thereby enabling the fabrication of bioconjugates and heterogeneous catalysts. Accurate size control of LSPC-synthesized materials ranging from quantum dots to submicrometer spheres and recent upscaling advancement toward the multiple-gram scale are helpful for extending the applicability of LSPC-synthesized nanomaterials to various fields. By discussing key reports on both the fundamentals and the applications related to laser ablation, fragmentation, and melting in liquids, this Article presents a timely and critical review of this emerging topic.
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Affiliation(s)
- Dongshi Zhang
- Technical Chemistry I and Center for Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen , Universitaetsstrasse 7, 45141 Essen, Germany
| | - Bilal Gökce
- Technical Chemistry I and Center for Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen , Universitaetsstrasse 7, 45141 Essen, Germany
| | - Stephan Barcikowski
- Technical Chemistry I and Center for Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen , Universitaetsstrasse 7, 45141 Essen, Germany
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34
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Abstract
In vivo imaging, which enables us to peer deeply within living subjects, is producing tremendous opportunities both for clinical diagnostics and as a research tool. Contrast material is often required to clearly visualize the functional architecture of physiological structures. Recent advances in nanomaterials are becoming pivotal to generate the high-resolution, high-contrast images needed for accurate, precision diagnostics. Nanomaterials are playing major roles in imaging by delivering large imaging payloads, yielding improved sensitivity, multiplexing capacity, and modularity of design. Indeed, for several imaging modalities, nanomaterials are now not simply ancillary contrast entities, but are instead the original and sole source of image signal that make possible the modality's existence. We address the physicochemical makeup/design of nanomaterials through the lens of the physical properties that produce contrast signal for the cognate imaging modality-we stratify nanomaterials on the basis of their (i) magnetic, (ii) optical, (iii) acoustic, and/or (iv) nuclear properties. We evaluate them for their ability to provide relevant information under preclinical and clinical circumstances, their in vivo safety profiles (which are being incorporated into their chemical design), their modularity in being fused to create multimodal nanomaterials (spanning multiple different physical imaging modalities and therapeutic/theranostic capabilities), their key properties, and critically their likelihood to be clinically translated.
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Affiliation(s)
- Bryan Ronain Smith
- Stanford University , 3155 Porter Drive, #1214, Palo Alto, California 94304-5483, United States
| | - Sanjiv Sam Gambhir
- The James H. Clark Center , 318 Campus Drive, First Floor, E-150A, Stanford, California 94305-5427, United States
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35
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Hu Q, Yang H, Wang Y, Xu S. Quantitatively resolving multivalent interactions on a macroscopic scale using force spectroscopy. Chem Commun (Camb) 2016; 52:3705-8. [PMID: 26864087 DOI: 10.1039/c5cc10535h] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Multivalent interactions remain difficult to be characterized and consequently controlled, particularly on a macroscopic scale. Using force-induced remnant magnetization spectroscopy (FIRMS), we have resolved the single-, double-, and triple-biotin-streptavidin interactions, multivalent DNA interactions and CXCL12-CXCR4 interactions on millimetre-scale surfaces. Our results establish FIRMS as a viable method for systematic resolution and controlled formation of multivalent interactions.
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Affiliation(s)
- Qiongzheng Hu
- Department of Chemistry, University of Houston, Houston, TX 77204, USA.
| | - Haopeng Yang
- Department of Biology and Biochemistry, University of Houston, Houston, TX 77204, USA.
| | - Yuhong Wang
- Department of Biology and Biochemistry, University of Houston, Houston, TX 77204, USA.
| | - Shoujun Xu
- Department of Chemistry, University of Houston, Houston, TX 77204, USA.
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36
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Wang W, Voigt A, Sundmacher K. The interaction of protein-coated bionanoparticles and surface receptors reevaluated: how important is the number of bonds? SOFT MATTER 2016; 12:6451-6462. [PMID: 27411954 DOI: 10.1039/c6sm00995f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Specifically designed bionanoparticles with a function-oriented protein-coating layer interact with self-prepared receptor surfaces as the counterpart. Based on surface plasmon resonance biosensing experiments, a model framework is validated to estimate the number of bonds formed between these bionanoparticles and the receptor surface based on multivalent interactions. Our multi-site kinetic model is able to analyze the adsorption rate constants and the number of bonds from experimental data of natural and synthetic bionanoparticles. The influence of the mass transport on the adsorption kinetics is modeled including a diffusional boundary layer where a helpful analytical solution has been derived. Our model framework extends previous studies to include a higher number of bonds, ranging from 1 up to 1000. An almost linear relationship between the number of bonds and the adsorption amount of bionanoparticles makes the model framework suitable to predict, for example, ligand density and to further assess coating performance. The proposed model framework can serve as a design tool for multivalent interaction experiments under variable process conditions.
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Affiliation(s)
- Wenjing Wang
- Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstraße 1, D-39106 Magdeburg, Germany.
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37
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Abstract
Current directions and emerging possibilities under investigation for the integration of synthetic and semi-synthetic multivalent architectures with biology are discussed. Attention is focussed around multivalent interactions, their fundamental role in biology, and current and potential approaches in emulating them in terms of structure and functionality using synthetic architectures.
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Affiliation(s)
- Eugene Mahon
- Conway Institute for Biomolecular and Biomedical Science, Belfield, Dublin 4, Ireland.
| | - Mihail Barboiu
- Adaptative Supramolecular Nanosystems Group, Institut Européen des Membranes, ENSCM/UMII/UMR-CNRS 5635, Pl. Eugène Bataillon, CC 047, 34095 Montpellier, Cedex 5, France.
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38
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Wang W, Voigt A, Wolff MW, Reichl U, Sundmacher K. Binding kinetics and multi-bond: Finding correlations by synthesizing interactions between ligand-coated bionanoparticles and receptor surfaces. Anal Biochem 2016; 505:8-17. [PMID: 27108189 DOI: 10.1016/j.ab.2016.04.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2015] [Revised: 03/08/2016] [Accepted: 04/03/2016] [Indexed: 12/11/2022]
Abstract
The number of bonds formed between one single bionanoparticle and many surface receptors is an important subject to be studied but is seldom quantitatively investigated. A new evaluation of the correlation between binding kinetics and number of bonds is presented by varying ligand density and receptor density. An experimental system was developed using measurements with surface plasmon resonance spectroscopy. A corresponding multi-site adsorption model elucidated the correlation. The results show that with the increase of the receptor density, the adsorption rate first decreased when the number of bonds was below a maximum value and then increased when the number of bonds stayed at this maximum value. The investigation on ligand density variation suggests that the coating density on top of the bionanoparticle surface may have a particular value below which more ligand will accelerate the adsorption rate. The ratio of ligand amount bound by the receptors to the total ligand amount associated with a single bionanoparticle will remain constant even if one attaches more ligands to a bionanoparticle. We envision that the bionanoparticle desorption will not depend on density changes from either ligand or receptor when the number of bonds reaches a specific efficient value.
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Affiliation(s)
- Wenjing Wang
- Max Planck Institute for Dynamics of Complex Technical Systems, D-39106 Magdeburg, Germany.
| | - Andreas Voigt
- Chair for Process Systems Engineering, Otto-von-Guericke University Magdeburg, D-39106 Magdeburg, Germany
| | - Michael W Wolff
- Max Planck Institute for Dynamics of Complex Technical Systems, D-39106 Magdeburg, Germany; Chair for Bioprocess Engineering, Otto-von-Guericke University Magdeburg, D-39106 Magdeburg, Germany
| | - Udo Reichl
- Max Planck Institute for Dynamics of Complex Technical Systems, D-39106 Magdeburg, Germany; Chair for Bioprocess Engineering, Otto-von-Guericke University Magdeburg, D-39106 Magdeburg, Germany
| | - Kai Sundmacher
- Max Planck Institute for Dynamics of Complex Technical Systems, D-39106 Magdeburg, Germany; Chair for Process Systems Engineering, Otto-von-Guericke University Magdeburg, D-39106 Magdeburg, Germany
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39
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Bhatia S, Camacho LC, Haag R. Pathogen Inhibition by Multivalent Ligand Architectures. J Am Chem Soc 2016; 138:8654-66. [DOI: 10.1021/jacs.5b12950] [Citation(s) in RCA: 133] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Sumati Bhatia
- Institut
für Chemie
und Biochemie, Freie Universität Berlin, Takustrasse 3, 14195 Berlin, Germany
| | - Luis Cuellar Camacho
- Institut
für Chemie
und Biochemie, Freie Universität Berlin, Takustrasse 3, 14195 Berlin, Germany
| | - Rainer Haag
- Institut
für Chemie
und Biochemie, Freie Universität Berlin, Takustrasse 3, 14195 Berlin, Germany
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40
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Chen YT, Jamison AC, Lee TR, Xu S. Quantitatively Resolving Ligand-Receptor Bonds on Cell Surfaces Using Force-Induced Remnant Magnetization Spectroscopy. ACS CENTRAL SCIENCE 2016; 2:75-9. [PMID: 27163031 PMCID: PMC4827459 DOI: 10.1021/acscentsci.5b00325] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Indexed: 05/25/2023]
Abstract
Molecule-specific noncovalent bonding on cell surfaces is the foundation for cellular recognition and functioning. A major challenge in probing these bonds is to resolve the specific bonds quantitatively and efficiently from the nonspecific interactions in a complex environment. Using force-induced remnant magnetization spectroscopy (FIRMS), we were able to resolve quantitatively three different interactions for magnetic beads bearing anti-CD4 antibodies with CD4(+) T cell surfaces based upon their binding forces. The binding force of the CD4 antibody-antigen bonds was determined to be 75 ± 3 pN. For comparison, the same bonds were also studied on a functionalized substrate surface, and the binding force was determined to be 90 ± 6 pN. The 15 pN difference revealed by high-resolution FIRMS illustrates the significant impact of the bonding environment. Because the force difference was unaffected by the cell number or the receptor density on the substrate, we attributed it to the possible conformational or local environmental differences of the CD4 antigens between the cell surface and substrate surface. Our results show that the high force resolution and detection efficiency afforded by FIRMS are valuable for studying protein-protein interactions on cell surfaces.
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41
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Huang WC, Burnouf PA, Su YC, Chen BM, Chuang KH, Lee CW, Wei PK, Cheng TL, Roffler SR. Engineering Chimeric Receptors To Investigate the Size- and Rigidity-Dependent Interaction of PEGylated Nanoparticles with Cells. ACS NANO 2016; 10:648-662. [PMID: 26741147 DOI: 10.1021/acsnano.5b05661] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Attachment of ligands to the surface of nanoparticles (NPs) is an attractive approach to target specific cells and increase intracellular delivery of nanocargos. To expedite investigation of targeted NPs, we engineered human cancer cells to express chimeric receptors that bind polyethylene glycol (PEG) and internalize stealth NPs in a fashion similar to ligand-targeted liposomes against epidermal growth factor receptor 1 or 2 (HER1 or HER2), which are validated targets for cancer therapy. Measurement of the rate of endocytosis and lysosomal accumulation of small (80-94 nm) or large (180-220 nm) flexible liposomes or more rigid lipid-coated mesoporous silica particles in human HT29 colon cancer and SKBR3 breast cancer cells that express chimeric receptors revealed that larger and more rigid NPs were internalized more slowly than smaller and more flexible NPs. An exception is when both the small and large liposomes underwent endocytosis via HER2. HER1 mediated faster and greater uptake of NPs into cells but retained NPs less well as compared to HER2. Lysosomal accumulation of NPs internalized via HER1 was unaffected by NP rigidity but was inversely related to NP size, whereas large rigid NPs internalized by HER2 displayed increased lysosomal accumulation. Our results provide insight into the effects of NP properties on receptor-mediated endocytosis and suggest that anti-PEG chimeric receptors may help accelerate investigation of targeted stealth NPs.
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Affiliation(s)
- Wei-Chiao Huang
- Institute of Biomedical Science, Academia Sinica , Taipei 11529, Taiwan
| | - Pierre-Alain Burnouf
- Institute of Biomedical Science, Academia Sinica , Taipei 11529, Taiwan
- Taiwan International Graduate Program in Molecular Medicine, National Yang-Ming University and Academia Sinica , Taipei, Taiwan
| | - Yu-Cheng Su
- Institute of Biomedical Science, Academia Sinica , Taipei 11529, Taiwan
| | - Bing-Mae Chen
- Institute of Biomedical Science, Academia Sinica , Taipei 11529, Taiwan
| | - Kuo-Hsiang Chuang
- Graduate Institute of Pharmacognosy, Taipei Medical University , Taipei 110, Taiwan
| | - Chia-Wei Lee
- Research Center for Applied Sciences, Academia Sinica , Taipei 11529, Taiwan
| | - Pei-Kuen Wei
- Research Center for Applied Sciences, Academia Sinica , Taipei 11529, Taiwan
| | - Tian-Lu Cheng
- Department of Biomedical and Environmental Biology, Center for Biomarkers and Biotech Drugs, Kaohsiung Medical University , Kaohsiung 80708, Taiwan
| | - Steve R Roffler
- Institute of Biomedical Science, Academia Sinica , Taipei 11529, Taiwan
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42
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Tarai A, Baruah JB. Anion assisted conformationally guided self-assemblies of multi-component cocrystals of dioxime. CrystEngComm 2016. [DOI: 10.1039/c6ce01157h] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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43
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Liu Y, Mei L, Xu C, Yu Q, Shi K, Zhang L, Wang Y, Zhang Q, Gao H, Zhang Z, He Q. Dual Receptor Recognizing Cell Penetrating Peptide for Selective Targeting, Efficient Intratumoral Diffusion and Synthesized Anti-Glioma Therapy. Theranostics 2016; 6:177-91. [PMID: 26877777 PMCID: PMC4729767 DOI: 10.7150/thno.13532] [Citation(s) in RCA: 72] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2015] [Accepted: 10/01/2015] [Indexed: 12/17/2022] Open
Abstract
Cell penetrating peptides (CPPs) were widely used for drug delivery to tumor. However, the nonselective in vivo penetration greatly limited the application of CPPs-mediated drug delivery systems. And the treatment of malignant tumors is usually followed by poor prognosis and relapse due to the existence of extravascular core regions of tumor. Thus it is important to endue selective targeting and stronger intratumoral diffusion abilities to CPPs. In this study, an RGD reverse sequence dGR was conjugated to a CPP octa-arginine to form a CendR (R/KXXR/K) motif contained tandem peptide R8-dGR (RRRRRRRRdGR) which could bind to both integrin αvβ3 and neuropilin-1 receptors. The dual receptor recognizing peptide R8-dGR displayed increased cellular uptake and efficient penetration ability into glioma spheroids in vitro. The following in vivo studies indicated the active targeting and intratumoral diffusion capabilities of R8-dGR modified liposomes. When paclitaxel was loaded in the liposomes, PTX-R8-dGR-Lip induced the strongest anti-proliferation effect on both tumor cells and cancer stem cells, and inhibited the formation of vasculogenic mimicry channels in vitro. Finally, the R8-dGR liposomal drug delivery system prolonged the medium survival time of intracranial C6 bearing mice by 2.1-fold compared to the untreated group, and achieved an exhaustive anti-glioma therapy including anti-tumor cells, anti-vasculogenic mimicry and anti-brain cancer stem cells. To sum up, all the results demonstrated that R8-dGR was an ideal dual receptor recognizing CPP with selective glioma targeting and efficient intratumoral diffusion, which could be further used to equip drug delivery system for effective glioma therapy.
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Affiliation(s)
- Yayuan Liu
- 1. Key Laboratory of Drug Targeting and Drug Delivery Systems, West China School of Pharmacy, Sichuan University, No. 17, Block 3, Southern Renmin Road, Chengdu 610041, China
| | - Ling Mei
- 1. Key Laboratory of Drug Targeting and Drug Delivery Systems, West China School of Pharmacy, Sichuan University, No. 17, Block 3, Southern Renmin Road, Chengdu 610041, China
| | - Chaoqun Xu
- 2. Sichuan Academy of Chinese Medicine Sciences, No. 51, Block 4, Southern Renmin Road, Chengdu 610041, China
| | - Qianwen Yu
- 1. Key Laboratory of Drug Targeting and Drug Delivery Systems, West China School of Pharmacy, Sichuan University, No. 17, Block 3, Southern Renmin Road, Chengdu 610041, China
| | - Kairong Shi
- 1. Key Laboratory of Drug Targeting and Drug Delivery Systems, West China School of Pharmacy, Sichuan University, No. 17, Block 3, Southern Renmin Road, Chengdu 610041, China
| | - Li Zhang
- 1. Key Laboratory of Drug Targeting and Drug Delivery Systems, West China School of Pharmacy, Sichuan University, No. 17, Block 3, Southern Renmin Road, Chengdu 610041, China
| | - Yang Wang
- 1. Key Laboratory of Drug Targeting and Drug Delivery Systems, West China School of Pharmacy, Sichuan University, No. 17, Block 3, Southern Renmin Road, Chengdu 610041, China
| | - Qianyu Zhang
- 1. Key Laboratory of Drug Targeting and Drug Delivery Systems, West China School of Pharmacy, Sichuan University, No. 17, Block 3, Southern Renmin Road, Chengdu 610041, China
| | - Huile Gao
- 1. Key Laboratory of Drug Targeting and Drug Delivery Systems, West China School of Pharmacy, Sichuan University, No. 17, Block 3, Southern Renmin Road, Chengdu 610041, China
| | - Zhirong Zhang
- 1. Key Laboratory of Drug Targeting and Drug Delivery Systems, West China School of Pharmacy, Sichuan University, No. 17, Block 3, Southern Renmin Road, Chengdu 610041, China
| | - Qin He
- 1. Key Laboratory of Drug Targeting and Drug Delivery Systems, West China School of Pharmacy, Sichuan University, No. 17, Block 3, Southern Renmin Road, Chengdu 610041, China
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44
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Kennedy ZC, Lisowski CE, Mitaru-Berceanu DS, Hutchison JE. Influence of Ligand Shell Composition upon Interparticle Interactions in Multifunctional Nanoparticles. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2015; 31:12742-12752. [PMID: 26497061 DOI: 10.1021/acs.langmuir.5b03096] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The interactions of nanoparticles with biomolecules, surfaces, or other nanostructures are dictated by the nanoparticle's surface chemistry. Thus, far, shortcomings of syntheses of nanoparticles with defined ligand shell architectures have limited our ability to understand how changes in their surface composition influence reactivity and assembly. We report new synthetic approaches to systematically control the number (polyvalency), length, and steric interactions of omega-functionalized (targeting) ligands within an otherwise passivating (diluent) ligand shell. A mesofluidic reactor was used to prepare nanoparticles with the same core diameter for each of the designed ligand architectures. When the targeting ligands are malonamide groups, the nanoparticles assemble via cross-linking in the presence of trivalent lanthanides. We examined the influence of ligand composition on assembly by monitoring the differences in optical properties of the cross-linked and free nanoparticles. Infrared spectroscopy, electron microscopy, and solution small-angle X-ray scattering provided additional insight into the assembly behavior. Lower (less than 33%) malonamide ligand densities (where the binding group extends beyond the periphery of diluent ethylene glycol ligands) produce the strongest optical responses and largest assemblies. Surprisingly, nanoparticles containing a higher surface number of targeting ligand did not produce an optical response or assemble, underscoring the importance of an informed mixed ligand strategy for highest nanoparticle performance.
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Affiliation(s)
- Zachary C Kennedy
- Department of Chemistry and Biochemistry, 1253 University of Oregon , Eugene, Oregon 97403, United States
| | - Carmen E Lisowski
- Department of Chemistry and Biochemistry, 1253 University of Oregon , Eugene, Oregon 97403, United States
| | - Dumitru S Mitaru-Berceanu
- Department of Chemistry and Biochemistry, 1253 University of Oregon , Eugene, Oregon 97403, United States
| | - James E Hutchison
- Department of Chemistry and Biochemistry, 1253 University of Oregon , Eugene, Oregon 97403, United States
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45
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Xiang Y, Kiseleva R, Reukov V, Mulligan J, Atkinson C, Schlosser R, Vertegel A. Relationship between Targeting Efficacy of Liposomes and the Dosage of Targeting Antibody Using Surface Plasmon Resonance. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2015; 31:12177-12186. [PMID: 26484937 DOI: 10.1021/acs.langmuir.5b01386] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Surface plasmon resonance (SPR) was used in this research to investigate the targeting efficacy (i.e., the binding affinity) of antibody-modified liposomes. The results indicated that liposomes modified by targeting antibodies exhibited an increase in apparent binding affinity, a result attributed to the avidity effect. More specifically, the targeting effect improved as the surface density of the targeting antibody increased, an increase primarily attributed to the decrease of the dissociation rate. However, this trend stopped when the surface density reached a threshold of approximately 1.5 × 10(8) antibody/mm(2). This surface density was found to be quite consistent regardless of the liposome size and the type of targeting antibody. In addition, a traditional cell binding experiment was conducted to confirm the saturation point obtained from SPR.
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Affiliation(s)
- Yun Xiang
- Department of Bioengineering, Clemson University , Clemson, South Carolina 29634, United States
| | - Raisa Kiseleva
- Department of Bioengineering, Clemson University , Clemson, South Carolina 29634, United States
| | - Vladimir Reukov
- Department of Bioengineering, Clemson University , Clemson, South Carolina 29634, United States
| | - Jennifer Mulligan
- Ralph H. Johnson VA Medical Center , Charleston, South Carolina 29401, United States
| | - Carl Atkinson
- Ralph H. Johnson VA Medical Center , Charleston, South Carolina 29401, United States
| | - Rodney Schlosser
- Ralph H. Johnson VA Medical Center , Charleston, South Carolina 29401, United States
| | - Alexey Vertegel
- Department of Bioengineering, Clemson University , Clemson, South Carolina 29634, United States
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46
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Green fluorescent protein nanopolygons as monodisperse supramolecular assemblies of functional proteins with defined valency. Nat Commun 2015; 6:7134. [PMID: 25972078 PMCID: PMC4479010 DOI: 10.1038/ncomms8134] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2014] [Accepted: 04/08/2015] [Indexed: 02/08/2023] Open
Abstract
Supramolecular protein assemblies offer novel nanoscale architectures with molecular precision and unparalleled functional diversity. A key challenge, however, is to create precise nano-assemblies of functional proteins with both defined structures and a controlled number of protein-building blocks. Here we report a series of supramolecular green fluorescent protein oligomers that are assembled in precise polygonal geometries and prepared in a monodisperse population. Green fluorescent protein is engineered to be self-assembled in cells into oligomeric assemblies that are natively separated in a single-protein resolution by surface charge manipulation, affording monodisperse protein (nano)polygons from dimer to decamer. Several functional proteins are multivalently displayed on the oligomers with controlled orientations. Spatial arrangements of protein oligomers and displayed functional proteins are directly visualized by a transmission electron microscope. By employing our functional protein assemblies, we provide experimental insight into multivalent protein–protein interactions and tools to manipulate receptor clustering on live cell surfaces. Supramolecular protein assemblies can provide novel nano-architectures with diverse structures and functions. Here, the authors report a fabrication strategy for a series of monodisperse protein oligomers, which allows valency-controlled display of various functional proteins.
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47
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Leistra AN, Han JH, Tang S, Orr BG, Banaszak Holl MM, Choi SK, Sinniah K. Force spectroscopy of multivalent binding of riboflavin-conjugated dendrimers to riboflavin binding protein. J Phys Chem B 2015; 119:5785-92. [PMID: 25872803 DOI: 10.1021/acs.jpcb.5b01028] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Putative riboflavin receptors are considered as biomarkers due to their overexpression in breast and prostate cancers. Hence, these receptors can be potentially exploited for use in targeted drug delivery systems where dendrimer nanoparticles with multivalent ligand attachments can lead to greater specificity in cellular interactions. In this study, the single molecule force spectroscopy technique was used to assess the physical strength of multivalent interactions by employing a riboflavin (RF)-conjugated generation 5 PAMAM dendrimer G5(RF)n nanoparticle. By varying the average RF ligand valency (n = 0, 3, 5), the rupture force was measured between G5(RF)n and the riboflavin binding protein (RFBP). The rupture force increased when the valency of RF increased. We observed at the higher valency (n = 5) three binding events that increased in rupture force with increasing loading rate. Assuming a single energy barrier, the Bell-Evans model was used to determine the kinetic off-rate and barrier width for all binding interactions. The analysis of our results appears to indicate that multivalent interactions are resulting in changes to rupture force and kinetic off-rates.
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Affiliation(s)
| | | | - Shengzhuang Tang
- ‡Michigan Nanotechnology Institute for Medicine and Biological Sciences, Ann Arbor, Michigan 48109, United States
| | - Bradford G Orr
- ‡Michigan Nanotechnology Institute for Medicine and Biological Sciences, Ann Arbor, Michigan 48109, United States.,⊥Department of Physics, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Mark M Banaszak Holl
- ‡Michigan Nanotechnology Institute for Medicine and Biological Sciences, Ann Arbor, Michigan 48109, United States.,§Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States.,∥Department of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Seok Ki Choi
- ‡Michigan Nanotechnology Institute for Medicine and Biological Sciences, Ann Arbor, Michigan 48109, United States.,#Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan 48109, United States
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48
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Wong PT, Tang S, Tang K, Coulter A, Mukherjee J, Gam K, Baker JR, Choi SK. A lipopolysaccharide binding heteromultivalent dendrimer nanoplatform for Gram negative cell targeting. J Mater Chem B 2015; 3:1149-1156. [DOI: 10.1039/c4tb01690d] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Heteromultivalent design of PAMAM dendrimer by conjugation with polymyxin B (PMB) ligand and excess auxiliary ethanolamine (EA) branches led to lipopolysaccharide (LPS) avidity two orders of magnitude greater than free PMB.
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Affiliation(s)
- Pamela T. Wong
- Michigan Nanotechnology Institute for Medicine and Biological Sciences
- University of Michigan
- Ann Arbor
- USA
- Department of Internal Medicine
| | - Shengzhuang Tang
- Michigan Nanotechnology Institute for Medicine and Biological Sciences
- University of Michigan
- Ann Arbor
- USA
- Department of Internal Medicine
| | - Kenny Tang
- Michigan Nanotechnology Institute for Medicine and Biological Sciences
- University of Michigan
- Ann Arbor
- USA
| | - Alexa Coulter
- Michigan Nanotechnology Institute for Medicine and Biological Sciences
- University of Michigan
- Ann Arbor
- USA
| | - Jhindan Mukherjee
- Michigan Nanotechnology Institute for Medicine and Biological Sciences
- University of Michigan
- Ann Arbor
- USA
- Department of Internal Medicine
| | - Kristina Gam
- Michigan Nanotechnology Institute for Medicine and Biological Sciences
- University of Michigan
- Ann Arbor
- USA
| | - James R. Baker
- Michigan Nanotechnology Institute for Medicine and Biological Sciences
- University of Michigan
- Ann Arbor
- USA
- Department of Internal Medicine
| | - Seok Ki Choi
- Michigan Nanotechnology Institute for Medicine and Biological Sciences
- University of Michigan
- Ann Arbor
- USA
- Department of Internal Medicine
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49
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Cao D, Tian S, Huang H, Chen J, Pan S. Divalent folate modification on PEG: an effective strategy for improving the cellular uptake and targetability of PEGylated polyamidoamine-polyethylenimine copolymer. Mol Pharm 2014; 12:240-52. [PMID: 25514347 DOI: 10.1021/mp500572v] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The stability and targeting ability of nanocarrier gene delivery systems are necessary conditions to ensure the good therapeutic effect and low nonspecific toxicity of cancer treatment. Poly(ethylene glycol) (PEG) has been widely applied for improving stability and as a spacer for linking ligands and nanocarriers to improve targetability. However, the cellular uptake and endosomal escape capacity of nanocarriers has been seriously harmed due to the introduction of PEG. In the present study, we synthesized a new gene delivery vector by coupling divalent folate-PEG (PEG3.4k-FA2) onto polyamidoamine-polyethylenimine (PME) copolymer (PME-(PEG3.4k-FA2)1.72). Both PEG and monovalent folate-PEG (PEG3.4k-FA1) modified PME were prepared as control polymers, which were named as PME-(PEG3.5k)1.69 and PME-(PEG3.4k-FA1)1.66, respectively. PME-(PEG3.4k-FA2)1.72 exhibited strong DNA condensation capacity like parent polymer PME which was not significantly influenced by PEG. PME-(PEG3.4k-FA2)1.72/DNA complexes at N/P = 10 had a diameter ∼143 nm and zeta potential ∼13 mV and showed the lowest cytotoxicity and hemolysis and the highest transfection efficiency among all tested polymers. In folate receptor positive (FR-positive) cells, the cellular uptake and transfection efficiency were increased with the increase in the number of folates coupled on PEG; the order was PME-(PEG3.4k-FA2)1.72 > PME-(PEG3.4k-FA1)1.66 > PME-(PEG3.5k)1.69. Folate competition assays showed that PME-(PEG3.4k-FA2)1.72 complexes had stronger targeting ability than PME-(PEG3.5k)1.69 and PME-(PEG3.4k-FA1)1.66 complexes due to their higher folate density per PEG molecule. Cellular uptake mechanism study showed that the folate density on PEG could change the endocytosis pathway of PME-(PEG3.5k)1.69 from clathrin-mediated endocytosis to caveolae-mediated endocytosis, leading to less lysosomal degradation. Distribution and uptake in 3D multicellular spheroid assays showed that divalent folate could offer PME-(PEG3.4k-FA2)1.72 complexes stronger penetrating ability and higher cellular uptake. With these advantages, PME-(PEG3.4k-FA2)1.72 may be a promising nonviral vector candidate for efficient gene delivery. This study also indicates that divalent folate modification on PEG can serve as an efficient strategy to improve the cellular uptake and targeting ability of PEGylated cationic polymers for gene delivery.
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Affiliation(s)
- Duanwen Cao
- Department of Pharmaceutical Science, Nanfang Hospital, Southern Medical University , Guangzhou 510515, P. R. China
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50
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Wong PT, Tang K, Coulter A, Tang S, Baker JR, Choi SK. Multivalent Dendrimer Vectors with DNA Intercalation Motifs for Gene Delivery. Biomacromolecules 2014; 15:4134-45. [DOI: 10.1021/bm501169s] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Pamela T. Wong
- Michigan Nanotechnology Institute for Medicine
and Biological Sciences and ‡Department of
Internal Medicine, University of Michigan Medical School, Ann Arbor, Michigan 48109, United States
| | - Kenny Tang
- Michigan Nanotechnology Institute for Medicine
and Biological Sciences and ‡Department of
Internal Medicine, University of Michigan Medical School, Ann Arbor, Michigan 48109, United States
| | - Alexa Coulter
- Michigan Nanotechnology Institute for Medicine
and Biological Sciences and ‡Department of
Internal Medicine, University of Michigan Medical School, Ann Arbor, Michigan 48109, United States
| | - Shengzhuang Tang
- Michigan Nanotechnology Institute for Medicine
and Biological Sciences and ‡Department of
Internal Medicine, University of Michigan Medical School, Ann Arbor, Michigan 48109, United States
| | - James R. Baker
- Michigan Nanotechnology Institute for Medicine
and Biological Sciences and ‡Department of
Internal Medicine, University of Michigan Medical School, Ann Arbor, Michigan 48109, United States
| | - Seok Ki Choi
- Michigan Nanotechnology Institute for Medicine
and Biological Sciences and ‡Department of
Internal Medicine, University of Michigan Medical School, Ann Arbor, Michigan 48109, United States
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