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Kershaw VF, Kosov DS. Non-adiabatic effects of nuclear motion in quantum transport of electrons: A self-consistent Keldysh-Langevin study. J Chem Phys 2020; 153:154101. [PMID: 33092389 DOI: 10.1063/5.0023275] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The molecular junction geometry is modeled in terms of nuclear degrees of freedom that are embedded in a stochastic quantum environment of non-equilibrium electrons. The time-evolution of the molecular geometry is governed via a mean force, a frictional force, and a stochastic force, forces arising from many electrons tunneling across the junction for a given nuclear vibration. Conversely, the current-driven nuclear dynamics feed back to the electronic current, which can be captured according to the extended expressions for the current that have explicit dependences on classical nuclear velocities and accelerations. Current-induced nuclear forces and the non-adiabatic electric current are computed using non-equilibrium Green's functions via a timescale separation solution of Keldysh-Kadanoff-Baym equations in the Wigner space. Applying the theory to molecular junctions demonstrated that non-adiabatic corrections play an important role when nuclear motion is considered non-equilibrium and, in particular, showed that non-equilibrium and equilibrium descriptions of nuclear motion produce significantly different current characteristics. It is observed that non-equilibrium descriptions generally produce heightened conductance profiles relative to the equilibrium descriptions and provide evidence that the effective temperature is an effective measure of the steady-state characteristics. Finally, we observe that the non-equilibrium descriptions of nuclear motion can give rise to the Landauer blowtorch effect via the emergence of multi-minima potential energy surfaces in conjunction with non-uniform temperature profiles. The Landauer blowtorch effect and its impact on the current characteristics, waiting times, and the Fano factor are explored for an effective adiabatic potential that morphs between a single, double, and triple potential as a function of voltage.
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Affiliation(s)
- Vincent F Kershaw
- College of Science and Engineering, James Cook University, Townsville, QLD 4811, Australia
| | - Daniel S Kosov
- College of Science and Engineering, James Cook University, Townsville, QLD 4811, Australia
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Utecht M, Gaebel T, Klamroth T. Desorption induced by low energy charge carriers on Si(111)-7 × 7: First principles molecular dynamics for benzene derivates. J Comput Chem 2018; 39:2517-2525. [PMID: 30365166 DOI: 10.1002/jcc.25607] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Revised: 09/03/2018] [Accepted: 09/05/2018] [Indexed: 11/09/2022]
Abstract
We use clusters for the modeling of local ion resonances caused by low energy charge carriers in STM-induced desorption of benzene derivates from Si(111)-7 × 7. We perform Born-Oppenheimer molecular dynamics for the charged systems assuming vertical transitions to the charged states at zero temperature, to rationalize the low temperature activation energies, which are found in experiment for chlorobenzene. Our calculations suggest very similar low temperature activation energies for toluene and benzene. For the cationic resonance transitions to physisorption are found even at 0 K, while the anion remains chemisorbed during the propagations. Further, we also extend our previous static quantum chemical investigations to toluene and benzene. In addition, an in depth analysis of the ionization potentials and electron affinities, which are used to estimate resonance energies, is given. © 2018 Wiley Periodicals, Inc.
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Affiliation(s)
- Manuel Utecht
- Institut für Chemie, Theoretische Chemie, Universität Potsdam, D-14476, Potsdam, Golm, Germany
| | - Tina Gaebel
- Institut für Chemie, Theoretische Chemie, Universität Potsdam, D-14476, Potsdam, Golm, Germany
| | - Tillmann Klamroth
- Institut für Chemie, Theoretische Chemie, Universität Potsdam, D-14476, Potsdam, Golm, Germany
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Gelbwaser-Klimovsky D, Aspuru-Guzik A, Thoss M, Peskin U. High-Voltage-Assisted Mechanical Stabilization of Single-Molecule Junctions. NANO LETTERS 2018; 18:4727-4733. [PMID: 29923410 DOI: 10.1021/acs.nanolett.8b01127] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Resonant tunneling is an efficient mechanism for charge transport through nanoscale conductance junctions due to the relatively high currents involved. However, continuous charging and discharging cycles of the nanoconductor during resonant tunneling often lead to mechanical instability. The realization of efficient nanoscale electronic components therefore depends to a large extent on the ability to mechanically stabilize them during resonant transport. In this work, we focus on single-molecule junctions, demonstrating that their mechanical stability during resonant transport can be increased by increasing the bias voltage. This counter-intuitive effect is attributed to the energy dependence of the molecule-lead coupling densities, which promote the rate of transport-induced cooling of molecular vibrations at higher voltages. The required energy dependence is characteristic of realistic electrodes (such as graphene), which cannot be modeled within the commonly invoked wide-band approximation. Our research provides new guidelines for the design of mechanically stable molecular devices operating in the regime of resonant charge transport and demonstrates these guidelines while considering realistic features of single-molecule junctions.
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Affiliation(s)
- David Gelbwaser-Klimovsky
- Department of Chemistry and Chemical Biology , Harvard University , Cambridge , Massachusetts 02138 , United States
| | - Alán Aspuru-Guzik
- Department of Chemistry and Chemical Biology , Harvard University , Cambridge , Massachusetts 02138 , United States
| | - Michael Thoss
- Institute of Physics , University of Freiburg , Hermann-Herder-Strasse 3 , D-79104 Freiburg , Germany
| | - Uri Peskin
- Schulich Faculty of Chemistry , Technion-Israel Institute of Technology , Haifa 32000 , Israel
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4
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Pavliček N, Majzik Z, Collazos S, Meyer G, Pérez D, Guitián E, Peña D, Gross L. Generation and Characterization of a meta-Aryne on Cu and NaCl Surfaces. ACS NANO 2017; 11:10768-10773. [PMID: 29028295 DOI: 10.1021/acsnano.7b06137] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We describe the generation of a meta-aryne at low temperature (T = 5 K) using atomic manipulation on Cu(111) and on bilayer NaCl on Cu(111). We observe different voltage thresholds for dehalogenation of the precursor and different reaction products depending on the substrate surface. The chemical structure is resolved by atomic force microscopy with CO-terminated tips, revealing the radical positions and confirming a diradical rather than an anti-Bredt olefin structure for this meta-aryne on NaCl.
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Affiliation(s)
- Niko Pavliček
- IBM Research-Zurich , Säumerstrasse 4, 8803 Rüschlikon, Switzerland
| | - Zsolt Majzik
- IBM Research-Zurich , Säumerstrasse 4, 8803 Rüschlikon, Switzerland
| | - Sara Collazos
- CIQUS, Universidade de Santiagode Compostela , 15782 Santiago de Compostela, Spain
| | - Gerhard Meyer
- IBM Research-Zurich , Säumerstrasse 4, 8803 Rüschlikon, Switzerland
| | - Dolores Pérez
- CIQUS, Universidade de Santiagode Compostela , 15782 Santiago de Compostela, Spain
| | - Enrique Guitián
- CIQUS, Universidade de Santiagode Compostela , 15782 Santiago de Compostela, Spain
| | - Diego Peña
- CIQUS, Universidade de Santiagode Compostela , 15782 Santiago de Compostela, Spain
| | - Leo Gross
- IBM Research-Zurich , Säumerstrasse 4, 8803 Rüschlikon, Switzerland
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5
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MacLean O, Huang K, Leung L, Polanyi JC. Direct and Delayed Dynamics in Electron-Induced Surface Reaction. J Am Chem Soc 2017; 139:17368-17375. [DOI: 10.1021/jacs.7b07607] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Oliver MacLean
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - Kai Huang
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - Lydie Leung
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - John C. Polanyi
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
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6
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Pavliček N, Gross L. Generation, manipulation and characterization of molecules by atomic force microscopy. Nat Rev Chem 2017. [DOI: 10.1038/s41570-016-0005] [Citation(s) in RCA: 128] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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7
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Godlewski S, Kawai H, Engelund M, Kolmer M, Zuzak R, Garcia-Lekue A, Novell-Leruth G, Echavarren AM, Sanchez-Portal D, Joachim C, Saeys M. Diels-Alder attachment of a planar organic molecule to a dangling bond dimer on a hydrogenated semiconductor surface. Phys Chem Chem Phys 2016; 18:16757-65. [PMID: 27271337 DOI: 10.1039/c6cp02346k] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Construction of single-molecule electronic devices requires the controlled manipulation of organic molecules and their properties. This could be achieved by tuning the interaction between the molecule and individual atoms by local "on-surface" chemistry, i.e., the controlled formation of chemical bonds between the species. We demonstrate here the reversible attachment of a planar conjugated polyaromatic molecule to a pair of unpassivated dangling bonds on a hydrogenated Ge(001):H surface via a Diels-Alder [4+2] addition using the tip of a scanning tunneling microscope (STM). Due to the small stability difference between the covalently bonded and a nearly undistorted structure attached to the dangling bond dimer by long-range dispersive forces, we show that at cryogenic temperatures the molecule can be switched between both configurations. The reversibility of this covalent bond forming reaction may be applied in the construction of complex circuits containing organic molecules with tunable properties.
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Affiliation(s)
- Szymon Godlewski
- Centre for Nanometer-Scale Science and Advanced Materials, NANOSAM, Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, Lojasiewicza 11, PL 30-348, Krakow, Poland.
| | - Hiroyo Kawai
- Institute of Materials Research and Engineering, 2 Fusionopolis Way, Innovis, #08-03, Singapore 138634, Singapore.
| | - Mads Engelund
- Centro de Fisica de Materiales CSIC-UPV/EHU, Paseo Manual de Lardizabal 5, E-20018, Donostia-San Sebastian, Spain
| | - Marek Kolmer
- Centre for Nanometer-Scale Science and Advanced Materials, NANOSAM, Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, Lojasiewicza 11, PL 30-348, Krakow, Poland.
| | - Rafal Zuzak
- Centre for Nanometer-Scale Science and Advanced Materials, NANOSAM, Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University, Lojasiewicza 11, PL 30-348, Krakow, Poland.
| | - Aran Garcia-Lekue
- Donostia International Physics Center, Paseo Manual de Lardizabal 4, 20018, Donostia-San Sebastian, Spain and IKERBASQUE, Basque Foundation for Science, E-48013, Bilbao, Spain
| | - Gerard Novell-Leruth
- Laboratory for Chemical Technology, Ghent University, Technologiepark 914, 9052 Ghent, Belgium
| | - Antonio M Echavarren
- Institute of Chemical Research of Catalonia (ICIQ), Avenida Països Catalans 16, 43007 Tarragona, Spain
| | - Daniel Sanchez-Portal
- Centro de Fisica de Materiales CSIC-UPV/EHU, Paseo Manual de Lardizabal 5, E-20018, Donostia-San Sebastian, Spain and Donostia International Physics Center, Paseo Manual de Lardizabal 4, 20018, Donostia-San Sebastian, Spain
| | - Christian Joachim
- Nanosciences Group & MANA Satellite, CEMES-CNRS, 29 rue Jeanne Marvig, F-31055 Toulouse, France and International Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan
| | - Mark Saeys
- Laboratory for Chemical Technology, Ghent University, Technologiepark 914, 9052 Ghent, Belgium
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8
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Anggara K, Huang K, Leung L, Chatterjee A, Cheng F, Polanyi JC. Clocking Surface Reaction by In-Plane Product Rotation. J Am Chem Soc 2016; 138:7377-85. [DOI: 10.1021/jacs.6b03101] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Kelvin Anggara
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 Saint George Street, Toronto, Ontario M5S 3H6, Canada
| | - Kai Huang
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 Saint George Street, Toronto, Ontario M5S 3H6, Canada
| | - Lydie Leung
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 Saint George Street, Toronto, Ontario M5S 3H6, Canada
| | - Avisek Chatterjee
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 Saint George Street, Toronto, Ontario M5S 3H6, Canada
| | - Fang Cheng
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 Saint George Street, Toronto, Ontario M5S 3H6, Canada
| | - John C. Polanyi
- Lash Miller Chemical Laboratories,
Department of Chemistry and Institute of Optical Sciences, University of Toronto, 80 Saint George Street, Toronto, Ontario M5S 3H6, Canada
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9
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Lock D, Rusimova KR, Pan TL, Palmer RE, Sloan PA. Atomically resolved real-space imaging of hot electron dynamics. Nat Commun 2015; 6:8365. [PMID: 26387703 PMCID: PMC4595757 DOI: 10.1038/ncomms9365] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2015] [Accepted: 08/10/2015] [Indexed: 11/24/2022] Open
Abstract
The dynamics of hot electrons are central to understanding the properties of many electronic devices. But their ultra-short lifetime, typically 100 fs or less, and correspondingly short transport length-scale in the nanometre range constrain real-space investigations. Here we report variable temperature and voltage measurements of the nonlocal manipulation of adsorbed molecules on the Si(111)-7 × 7 surface in the scanning tunnelling microscope. The range of the nonlocal effect increases with temperature and, at constant temperature, is invariant over a wide range of electron energies. The measurements probe, in real space, the underlying hot electron dynamics on the 10 nm scale and are well described by a two-dimensional diffusive model with a single decay channel, consistent with 2-photon photo-emission (2PPE) measurements of the real time dynamics.
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Affiliation(s)
- D. Lock
- Department of Physics, University of Bath, Bath, BA2 7AY, UK
| | - K. R. Rusimova
- Department of Physics, University of Bath, Bath, BA2 7AY, UK
| | - T. L. Pan
- Nanoscale Physics Research Laboratory, School of Physics and Astronomy, University of Birmingham, Birmingham, B15 2TT, UK
| | - R. E. Palmer
- Nanoscale Physics Research Laboratory, School of Physics and Astronomy, University of Birmingham, Birmingham, B15 2TT, UK
| | - P. A. Sloan
- Department of Physics, University of Bath, Bath, BA2 7AY, UK
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