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Agouridas V, El Mahdi O, Diemer V, Cargoët M, Monbaliu JCM, Melnyk O. Native Chemical Ligation and Extended Methods: Mechanisms, Catalysis, Scope, and Limitations. Chem Rev 2019; 119:7328-7443. [DOI: 10.1021/acs.chemrev.8b00712] [Citation(s) in RCA: 243] [Impact Index Per Article: 48.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Vangelis Agouridas
- UMR CNRS 8204, Centre d’Immunité et d’Infection de Lille, University of Lille, CNRS, Institut Pasteur de Lille, F-59000 Lille, France
| | - Ouafâa El Mahdi
- Faculté Polydisciplinaire de Taza, University Sidi Mohamed Ben Abdellah, BP 1223 Taza Gare, Morocco
| | - Vincent Diemer
- UMR CNRS 8204, Centre d’Immunité et d’Infection de Lille, University of Lille, CNRS, Institut Pasteur de Lille, F-59000 Lille, France
| | - Marine Cargoët
- UMR CNRS 8204, Centre d’Immunité et d’Infection de Lille, University of Lille, CNRS, Institut Pasteur de Lille, F-59000 Lille, France
| | - Jean-Christophe M. Monbaliu
- Center for Integrated Technology and Organic Synthesis, Department of Chemistry, University of Liège, Building B6a, Room 3/16a, Sart-Tilman, B-4000 Liège, Belgium
| | - Oleg Melnyk
- UMR CNRS 8204, Centre d’Immunité et d’Infection de Lille, University of Lille, CNRS, Institut Pasteur de Lille, F-59000 Lille, France
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2
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Yan B, Shi W, Ye L, Liu L. Acyl donors for native chemical ligation. Curr Opin Chem Biol 2018; 46:33-40. [PMID: 29654943 DOI: 10.1016/j.cbpa.2018.03.018] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2018] [Revised: 03/21/2018] [Accepted: 03/29/2018] [Indexed: 11/28/2022]
Abstract
Native chemical ligation (NCL) has become one of the most important methods in chemical syntheses of proteins. Recently, in order to expand its scope, considerable effort has been devoted to tuning the C-terminal acyl donor thioesters used in NCL. This article reviews the recent advances in the design of C-terminal acyl donors, their precursors and surrogates, and highlights some noteworthy progress that may lead the future direction of protein chemical synthesis.
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Affiliation(s)
- Bingjia Yan
- Tsinghua-Peking Center for Life Sciences, Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology (Ministry of Education), Beijing Advanced Innovation Center for Structural Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Weiwei Shi
- Tsinghua-Peking Center for Life Sciences, Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology (Ministry of Education), Beijing Advanced Innovation Center for Structural Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Linzhi Ye
- Tsinghua-Peking Center for Life Sciences, Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology (Ministry of Education), Beijing Advanced Innovation Center for Structural Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Lei Liu
- Tsinghua-Peking Center for Life Sciences, Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology (Ministry of Education), Beijing Advanced Innovation Center for Structural Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China.
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3
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Otaka A, Shigenaga A. Protein Synthetic Chemistry Inspired by Intein-mediated Protein Splicing. J SYN ORG CHEM JPN 2018. [DOI: 10.5059/yukigoseikyokaishi.76.45] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Akira Otaka
- Institutes of Biomedical Sciences and Graduate School of Pharmaceutical Sciences, Tokushima University
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4
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Jiang YY, Zhu L, Man X, Liang Y, Bi S. Mechanism of trifluoroacetic-acid-promoted N-to-S acyl transfer of enamides. Tetrahedron 2017. [DOI: 10.1016/j.tet.2017.05.099] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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5
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Kim BM. The C-Terminal O-S Acyl Shift Pathway under Acidic Condition to Propose Peptide-Thioesters. Molecules 2016; 21:E1559. [PMID: 27869694 PMCID: PMC6272864 DOI: 10.3390/molecules21111559] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2016] [Revised: 11/03/2016] [Accepted: 11/11/2016] [Indexed: 12/04/2022] Open
Abstract
Peptide-thioester is a pivotal intermediate for peptide ligation and N-, C-terminal cyclization. In this study, desired pathway and the side products of two C-terminal handles, hydroxyethylthiol (HET) and hydroxypropylthiol (HPT) are described in different conditions as well as kinetic studies. In addition, a new mechanism of C-terminal residue racemization is proposed on the basis of differentiation of products derived from the two C-terminal handles in preparing peptide thioesters through an acid-catalyzed tandem thiol switch, first by an intramolecular O-S acyl shift, and then by an intermolecular S-S exchange.
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Affiliation(s)
- Bo Mi Kim
- Division of Bio-Nanochemistry, Wonkwang University, Iksan 570-749, Korea.
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6
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Tsuda S, Mochizuki M, Sakamoto K, Denda M, Nishio H, Otaka A, Yoshiya T. N-Sulfanylethylaminooxybutyramide (SEAoxy): A Crypto-Thioester Compatible with Fmoc Solid-Phase Peptide Synthesis. Org Lett 2016; 18:5940-5943. [PMID: 27805411 DOI: 10.1021/acs.orglett.6b03055] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
An N-sulfanylethylaminooxybutyramide (SEAoxy) has been developed as a novel thioester equivalent for native chemical ligation. SEAoxy peptide was straightforwardly synthesized by conventional Fmoc solid-phase peptide synthesis without a problem. Moreover, SEAoxy peptide could be directly applied to native chemical ligation owing to the intramolecular N-to-S acyl shift that releases the peptide-thioester in situ. This methodology was successfully applied to the synthesis of two bioactive peptides.
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Affiliation(s)
- Shugo Tsuda
- Peptide Institute, Inc., Ibaraki, Osaka 567-0085, Japan
| | | | - Ken Sakamoto
- Peptide Institute, Inc., Ibaraki, Osaka 567-0085, Japan
| | - Masaya Denda
- Institute of Biomedical Sciences and Graduate School of Pharmaceutical Sciences, Tokushima University , Tokushima 770-8505, Japan
| | - Hideki Nishio
- Peptide Institute, Inc., Ibaraki, Osaka 567-0085, Japan
| | - Akira Otaka
- Institute of Biomedical Sciences and Graduate School of Pharmaceutical Sciences, Tokushima University , Tokushima 770-8505, Japan
| | - Taku Yoshiya
- Peptide Institute, Inc., Ibaraki, Osaka 567-0085, Japan
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7
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Tsuda Y, Shigenaga A, Tsuji K, Denda M, Sato K, Kitakaze K, Nakamura T, Inokuma T, Itoh K, Otaka A. Development of a Chemical Methodology for the Preparation of Peptide Thioesters Applicable to Naturally Occurring Peptides Using a Sequential Quadruple Acyl Transfer System. ChemistryOpen 2015; 4:448-52. [PMID: 26478838 PMCID: PMC4603404 DOI: 10.1002/open.201500086] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2015] [Indexed: 02/04/2023] Open
Abstract
Peptide thioesters are very useful in protein chemistry, and chemistry- and biochemistry-based protocols are used for the preparation of thioesters. Among such protocols, only a few biochemistry-based approaches have been use for naturally occurring peptide sequences. The development of chemistry-based protocols applicable to natural sequences remains a challenge, and the development of such methods would be a major contribution to protein science. Here, we describe the preparation of peptide thioesters using innovative methodology that features nickel(II)-mediated alcoholysis of a naturally occurring peptide sequence, followed by O−N and N−S acyl transfers. This protocol involves sequential quadruple acyl transfer, termed SQAT. Notably, the SQAT system consists of sequential chemical reactions that allow naturally occurring peptide sequences to be converted to thioesters without requiring an artificial chemical unit.
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Affiliation(s)
- Yusuke Tsuda
- Institute of Health Bioscience, Graduate School of PharmaceuticalSciences, Tokushima University Shomachi, Tokushima, 770-8505, Japan
| | - Akira Shigenaga
- Institute of Health Bioscience, Graduate School of PharmaceuticalSciences, Tokushima University Shomachi, Tokushima, 770-8505, Japan
| | - Kohei Tsuji
- Institute of Health Bioscience, Graduate School of PharmaceuticalSciences, Tokushima University Shomachi, Tokushima, 770-8505, Japan
| | - Masaya Denda
- Institute of Health Bioscience, Graduate School of PharmaceuticalSciences, Tokushima University Shomachi, Tokushima, 770-8505, Japan
| | - Kohei Sato
- Institute of Health Bioscience, Graduate School of PharmaceuticalSciences, Tokushima University Shomachi, Tokushima, 770-8505, Japan
| | - Keisuke Kitakaze
- Institute of Health Bioscience, Graduate School of PharmaceuticalSciences, Tokushima University Shomachi, Tokushima, 770-8505, Japan
| | - Takahiro Nakamura
- Institute of Health Bioscience, Graduate School of PharmaceuticalSciences, Tokushima University Shomachi, Tokushima, 770-8505, Japan
| | - Tsubasa Inokuma
- Institute of Health Bioscience, Graduate School of PharmaceuticalSciences, Tokushima University Shomachi, Tokushima, 770-8505, Japan
| | - Kohji Itoh
- Institute of Health Bioscience, Graduate School of PharmaceuticalSciences, Tokushima University Shomachi, Tokushima, 770-8505, Japan
| | - Akira Otaka
- Institute of Health Bioscience, Graduate School of PharmaceuticalSciences, Tokushima University Shomachi, Tokushima, 770-8505, Japan
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Tailhades J, Patil NA, Hossain MA, Wade JD. Intramolecular acyl transfer in peptide and protein ligation and synthesis. J Pept Sci 2015; 21:139-47. [DOI: 10.1002/psc.2749] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2014] [Revised: 12/25/2014] [Accepted: 12/27/2014] [Indexed: 12/18/2022]
Affiliation(s)
- Julien Tailhades
- The Florey Institute of Neuroscience and Mental Health; University of Melbourne; Victoria 3010 Australia
| | - Nitin A. Patil
- The Florey Institute of Neuroscience and Mental Health; University of Melbourne; Victoria 3010 Australia
- School of Chemistry; University of Melbourne; Victoria 3010 Australia
| | - Mohammed Akhter Hossain
- The Florey Institute of Neuroscience and Mental Health; University of Melbourne; Victoria 3010 Australia
- School of Chemistry; University of Melbourne; Victoria 3010 Australia
| | - John D. Wade
- The Florey Institute of Neuroscience and Mental Health; University of Melbourne; Victoria 3010 Australia
- School of Chemistry; University of Melbourne; Victoria 3010 Australia
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9
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Zheng JS, Chen X, Tang S, Chang HN, Wang FL, Zuo C. A New Method for Synthesis of Peptide Thioesters via Irreversible N-to-S Acyl Transfer. Org Lett 2014; 16:4908-11. [DOI: 10.1021/ol5024213] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ji-Shen Zheng
- High
Magnetic Field Laboratory, Chinese Academy of Sciences, Hefei 230031, China
- Department
of Chemistry, Tsinghua University, Beijing 100084, China
| | - Xin Chen
- Tsinghua-Peking
Center for Life Sciences, Tsinghua University, Beijing 100084, China
| | - Shan Tang
- Tsinghua-Peking
Center for Life Sciences, Tsinghua University, Beijing 100084, China
- Department
of Chemistry, Tsinghua University, Beijing 100084, China
| | - Hao-Nan Chang
- Department
of Chemistry, Tsinghua University, Beijing 100084, China
| | - Feng-Liang Wang
- Department
of Chemistry, Tsinghua University, Beijing 100084, China
| | - Chao Zuo
- Department
of Chemistry, Tsinghua University, Beijing 100084, China
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10
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Qiu Y, Hemu X, Liu DX, Tam JP. Selective Bi-directional Amide Bond Cleavage ofN-Methylcysteinyl Peptide. European J Org Chem 2014. [DOI: 10.1002/ejoc.201402261] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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11
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Facile synthesis of C-terminal peptide hydrazide and thioester of NY-ESO-1 (A39-A68) from an Fmoc-hydrazine 2-chlorotrityl chloride resin. Tetrahedron 2014. [DOI: 10.1016/j.tet.2014.03.022] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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12
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Liu F, Mayer JP. Protein Chemical Synthesis in Drug Discovery. PROTEIN LIGATION AND TOTAL SYNTHESIS I 2014; 362:183-228. [DOI: 10.1007/128_2014_598] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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13
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Chemical synthesis of proteins using N-sulfanylethylanilide peptides, based on N-S acyl transfer chemistry. Top Curr Chem (Cham) 2014; 363:33-56. [PMID: 25467538 DOI: 10.1007/128_2014_586] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Native chemical ligation (NCL), which features the use of peptide thioesters, is among the most reliable ligation protocols in chemical protein synthesis. Thioesters have conventionally been synthesized using tert-butyloxycarbonyl (Boc)-based solid-phase peptide synthesis (SPPS); however, the increasing use of 9-fluorenylmethyloxycarbonyl (Fmoc) SPPS requires an efficient preparative protocol for thioesters which is fully compatible with Fmoc chemistry. We have addressed this issue by mimicking the naturally occurring thioester-forming step seen in intein-mediated protein splicing of the intein-extein system, using an appropriate chemical device to induce N-S acyl transfer reaction, avoiding the problems associated with Fmoc strategies. We have developed N-sulfanylethylanilide (SEAlide) peptides, which can be synthesized by standard Fmoc SPPS and converted to the corresponding thioesters through treatment under acidic conditions. Extensive examination of SEAlide peptides showed that the amide-type SEAlide peptides can be directly and efficiently involved in NCL via thioester species in the presence of phosphate salts, even under neutral conditions. The presence or absence of phosphate salts provided kinetically controllable chemoselectivity in NCL for SEAlide peptides. This allowed SEAlide peptides to be used in both one-pot/N-to-C-directed sequential NCL under kinetically controlled conditions, and the convergent coupling of large peptide fragments, which facilitated the chemical synthesis of proteins over about 100 residues. The use of SEAlide peptides, enabling sequential NCL operated under kinetically controlled conditions, and the convergent coupling, were used for the total chemical synthesis of a 162-residue monoglycosylated GM2-activator protein (GM2AP) analog.
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14
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Liu F, Mayer JP. An Fmoc Compatible, O to S Shift-Mediated Procedure for the Preparation of C-Terminal Thioester Peptides. J Org Chem 2013; 78:9848-56. [DOI: 10.1021/jo4015112] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Fa Liu
- Lilly Research Laboratories, Indianapolis, Indiana 46285, United States
| | - John P. Mayer
- Lilly Research Laboratories, Indianapolis, Indiana 46285, United States
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15
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Yang R, Qi L, Liu Y, Ding Y, Kwek MSY, Liu CF. Chemical synthesis of N-peptidyl 2-pyrrolidinemethanethiol for peptide ligation. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.05.013] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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16
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Taichi M, Hemu X, Qiu Y, Tam JP. A thioethylalkylamido (TEA) thioester surrogate in the synthesis of a cyclic peptide via a tandem acyl shift. Org Lett 2013; 15:2620-3. [PMID: 23668312 DOI: 10.1021/ol400801k] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The cyclic cystine-knot peptide, kalata B1, was synthesized by employing a novel Fmoc-compatible thioethylalkylamido (TEA) thioester surrogate via an N-S acyl shift followed by a thiol-thioester exchange reaction. TEA thioester surrogate is cost-effective, conveniently prepared in one-step with starting materials, readily available from commercial sources, and highly efficient in preparing peptide thioesters.
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Affiliation(s)
- Misako Taichi
- School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551
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18
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19
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Otaka A, Sato K, Ding H, Shigenaga A. One-Pot/Sequential Native Chemical Ligation UsingN-Sulfanylethylanilide Peptide. CHEM REC 2012; 12:479-90. [DOI: 10.1002/tcr.201200007] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2012] [Indexed: 01/05/2023]
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20
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Sakamoto K, Sato K, Shigenaga A, Tsuji K, Tsuda S, Hibino H, Nishiuchi Y, Otaka A. Synthetic Procedure for N-Fmoc Amino Acyl-N-Sulfanylethylaniline Linker as Crypto-Peptide Thioester Precursor with Application to Native Chemical Ligation. J Org Chem 2012; 77:6948-58. [DOI: 10.1021/jo3011107] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Ken Sakamoto
- Institute
of Health Biosciences and Graduate School of Pharmaceutical Sciences, The University of Tokushima, Tokushima 770-8505, Japan
| | - Kohei Sato
- Institute
of Health Biosciences and Graduate School of Pharmaceutical Sciences, The University of Tokushima, Tokushima 770-8505, Japan
| | - Akira Shigenaga
- Institute
of Health Biosciences and Graduate School of Pharmaceutical Sciences, The University of Tokushima, Tokushima 770-8505, Japan
| | - Kohei Tsuji
- Institute
of Health Biosciences and Graduate School of Pharmaceutical Sciences, The University of Tokushima, Tokushima 770-8505, Japan
| | - Shugo Tsuda
- Institute
of Health Biosciences and Graduate School of Pharmaceutical Sciences, The University of Tokushima, Tokushima 770-8505, Japan
- Saito Research Center, Peptide Institute, Inc., 7-2-9 Saito Ibaraki, Osaka
567-0085, Japan
| | - Hajime Hibino
- Saito Research Center, Peptide Institute, Inc., 7-2-9 Saito Ibaraki, Osaka
567-0085, Japan
| | - Yuji Nishiuchi
- Saito Research Center, Peptide Institute, Inc., 7-2-9 Saito Ibaraki, Osaka
567-0085, Japan
- Department
of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Akira Otaka
- Institute
of Health Biosciences and Graduate School of Pharmaceutical Sciences, The University of Tokushima, Tokushima 770-8505, Japan
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Murakami M, Okamoto R, Izumi M, Kajihara Y. Chemical synthesis of an erythropoietin glycoform containing a complex-type disialyloligosaccharide. Angew Chem Int Ed Engl 2012; 51:3567-72. [PMID: 22307754 DOI: 10.1002/anie.201109034] [Citation(s) in RCA: 122] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2011] [Indexed: 01/19/2023]
Affiliation(s)
- Masumi Murakami
- Department of Chemistry, Graduate School of Science, Osaka University, 1-1, Machikaneyama, Toyonaka, 560-0043 Japan
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22
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Kotha S, Goyal née Bansal D, Thota N, Srinivas V. Synthesis of Modified Phenylalanine Peptides by Cross Enyne Metathesis and a Diels-Alder Reaction as Key Steps. European J Org Chem 2012. [DOI: 10.1002/ejoc.201101744] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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23
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Murakami M, Okamoto R, Izumi M, Kajihara Y. Chemical Synthesis of an Erythropoietin Glycoform Containing a Complex-type Disialyloligosaccharide. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201109034] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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Sharma RK, Tam JP. Tandem Thiol Switch Synthesis of Peptide Thioesters via N–S Acyl Shift on Thiazolidine. Org Lett 2011; 13:5176-9. [DOI: 10.1021/ol202047q] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Rohit K. Sharma
- School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551
| | - James P. Tam
- School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551
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