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Nomura K, Maki Y, Okamoto R, Satoh A, Kajihara Y. Glycoprotein Semisynthesis by Chemical Insertion of Glycosyl Asparagine Using a Bifunctional Thioacid-Mediated Strategy. J Am Chem Soc 2021; 143:10157-10167. [PMID: 34189908 DOI: 10.1021/jacs.1c02601] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Glycosylation is a major modification of secreted and cell surface proteins, and the resultant glycans show considerable heterogeneity in their structures. To understand the biological processes arising from each glycoform, the preparation of homogeneous glycoproteins is essential for extensive biological experiments. To establish a more robust and rapid synthetic route for the synthesis of homogeneous glycoproteins, we studied several key reactions based on amino thioacids. We found that diacyl disulfide coupling (DDC) formed with glycosyl asparagine thioacid and peptide thioacid yielded glycopeptides. This efficient coupling reaction enabled us to develop a new glycoprotein synthesis method, such as the bifunctional thioacid-mediated strategy, which can couple two peptides with the N- and C-termini of glycosyl asparagine thioacid. Previous glycoprotein synthesis methods required valuable glycosyl asparagine in the early stage and subsequent multiple glycoprotein synthesis routes, whereas the developed concept can generate glycoproteins within a few steps from peptide and glycosyl asparagine thioacid. Herein, we report the characterization of the DDC of amino thioacids and the efficient ability of glycosyl asparagine thioacid to be used for robust glycoprotein semisynthesis.
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Affiliation(s)
| | | | | | - Ayano Satoh
- Graduate School of Interdisciplinary Science and Engineering in Health Systems, Okayama University, 3-1-1, Tsushimanaka, Okayama 700-0082, Japan
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2
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Pira SL, El Mahdi O, Raibaut L, Drobecq H, Dheur J, Boll E, Melnyk O. Insight into the SEA amide thioester equilibrium. Application to the synthesis of thioesters at neutral pH. Org Biomol Chem 2018; 14:7211-6. [PMID: 27282651 DOI: 10.1039/c6ob01079b] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
The bis(2-sulfanylethyl)amide (SEA) N,S-acyl shift thioester surrogate has found a variety of useful applications in the field of protein total synthesis. Here we present novel insights into the SEA amide/thioester equilibrium in water which is an essential step in any reaction involving the thioester surrogate properties of the SEA group. We also show that the SEA amide thioester equilibrium can be efficiently displaced at neutral pH for accessing peptide alkylthioesters, i.e. the key components of the native chemical ligation (NCL) reaction.
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Affiliation(s)
- S L Pira
- Univ. Lille, CNRS, Institut Pasteur de Lille, UMR 8161 - M3T - Mechanisms of Tumorigenesis and Target Therapies, F-59000 Lille, France.
| | - O El Mahdi
- Université Sidi Mohamed Ben Abdellah, Morocco
| | - L Raibaut
- Univ. Lille, CNRS, Institut Pasteur de Lille, UMR 8161 - M3T - Mechanisms of Tumorigenesis and Target Therapies, F-59000 Lille, France.
| | - H Drobecq
- Univ. Lille, CNRS, Institut Pasteur de Lille, UMR 8161 - M3T - Mechanisms of Tumorigenesis and Target Therapies, F-59000 Lille, France.
| | - J Dheur
- Univ. Lille, CNRS, Institut Pasteur de Lille, UMR 8161 - M3T - Mechanisms of Tumorigenesis and Target Therapies, F-59000 Lille, France.
| | - E Boll
- Univ. Lille, CNRS, Institut Pasteur de Lille, UMR 8161 - M3T - Mechanisms of Tumorigenesis and Target Therapies, F-59000 Lille, France.
| | - O Melnyk
- Univ. Lille, CNRS, Institut Pasteur de Lille, UMR 8161 - M3T - Mechanisms of Tumorigenesis and Target Therapies, F-59000 Lille, France.
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3
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N. N, Thimmalapura VM, Hosamani B, Prabhu G, Kumar LR, Sureshbabu VV. Thioacids – synthons for amide bond formation and ligation reactions: assembly of peptides and peptidomimetics. Org Biomol Chem 2018; 16:3524-3552. [DOI: 10.1039/c8ob00512e] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The synthesis of α-amino thioacids and peptide thioacids and their applications in chemoselective amide bond formation, ligation of peptides/proteins/glycopeptides and synthesis of peptidomimetics are reviewed.
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Affiliation(s)
- Narendra N.
- Department of Chemistry
- University College of Science
- Tumkur University
- Tumkur 572 103
- India
| | - Vishwanatha M. Thimmalapura
- Room No. 109
- Peptide Research Laboratory
- Department of Studies in Chemistry
- Central College Campus
- Dr B. R. Ambedkar Veedhi
| | - Basavaprabhu Hosamani
- Room No. 109
- Peptide Research Laboratory
- Department of Studies in Chemistry
- Central College Campus
- Dr B. R. Ambedkar Veedhi
| | - Girish Prabhu
- Room No. 109
- Peptide Research Laboratory
- Department of Studies in Chemistry
- Central College Campus
- Dr B. R. Ambedkar Veedhi
| | - L. Roopesh Kumar
- Room No. 109
- Peptide Research Laboratory
- Department of Studies in Chemistry
- Central College Campus
- Dr B. R. Ambedkar Veedhi
| | - Vommina V. Sureshbabu
- Room No. 109
- Peptide Research Laboratory
- Department of Studies in Chemistry
- Central College Campus
- Dr B. R. Ambedkar Veedhi
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4
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Abstract
The present review offers an overview of nonclassical (e.g., with no pre- or in situ activation of a carboxylic acid partner) approaches for the construction of amide bonds. The review aims to comprehensively discuss relevant work, which was mainly done in the field in the last 20 years. Organization of the data follows a subdivision according to substrate classes: catalytic direct formation of amides from carboxylic and amines ( section 2 ); the use of carboxylic acid surrogates ( section 3 ); and the use of amine surrogates ( section 4 ). The ligation strategies (NCL, Staudinger, KAHA, KATs, etc.) that could involve both carboxylic acid and amine surrogates are treated separately in section 5 .
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Affiliation(s)
- Renata Marcia de Figueiredo
- Institut Charles Gerhardt de Montpellier (ICGM), UMR 5253-CNRS-UM-ENSCM, Ecole Nationale Supérieure de Chimie , 8 rue de l'Ecole Normale, 34296 Montpellier Cedex 5, France
| | - Jean-Simon Suppo
- Institut Charles Gerhardt de Montpellier (ICGM), UMR 5253-CNRS-UM-ENSCM, Ecole Nationale Supérieure de Chimie , 8 rue de l'Ecole Normale, 34296 Montpellier Cedex 5, France
| | - Jean-Marc Campagne
- Institut Charles Gerhardt de Montpellier (ICGM), UMR 5253-CNRS-UM-ENSCM, Ecole Nationale Supérieure de Chimie , 8 rue de l'Ecole Normale, 34296 Montpellier Cedex 5, France
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5
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Facile synthesis of C-terminal peptide thioacids under mild conditions from N -sulfanylethylanilide peptides. Tetrahedron 2016. [DOI: 10.1016/j.tet.2015.12.070] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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6
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Hatanaka T, Yuki R, Saito R, Sasaki K. α-Methylphenacyl thioesters as convenient thioacid precursors. Org Biomol Chem 2016; 14:10589-10592. [DOI: 10.1039/c6ob02256a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
α-Methylphenacyl (Mpa) thioesters are described as precursors of thioacids.
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Affiliation(s)
- Toru Hatanaka
- Department of Chemistry
- Toho University
- Funabashi 274-8510
- Japan
| | - Ryosuke Yuki
- Department of Chemistry
- Toho University
- Funabashi 274-8510
- Japan
| | - Ryota Saito
- Department of Chemistry
- Toho University
- Funabashi 274-8510
- Japan
- Research Center for Materials with Integrated Properties
| | - Kaname Sasaki
- Department of Chemistry
- Toho University
- Funabashi 274-8510
- Japan
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7
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8
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Khaybullin RN, Panda SS, Mirzai S, Toneff E, Asiri AM, Hall CD, Katritzky AR. Arginine thioacid in synthesis of arginine conjugates and peptides. RSC Adv 2014. [DOI: 10.1039/c4ra04897k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
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9
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Melnyk O, Ollivier N, Besret S, Melnyk P. Phenylthiocarbamate or N-carbothiophenyl group chemistry in peptide synthesis and bioconjugation. Bioconjug Chem 2014; 25:629-39. [PMID: 24641212 PMCID: PMC4064696 DOI: 10.1021/bc500052r] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
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The design of novel chemoselective
and site-specific ligation methods
provides new tools for obtaining complex scaffolds, peptidomimetics,
and peptide conjugates. The chemistry of the N-phenylthiocarbonyl
group has led to several developments in peptide ligation chemistry
and peptide bioconjugation during the last 10 years. The aim of this
review is to provide an overview of this emerging field.
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10
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Mali SM, Gopi HN. Thioacetic Acid/NaSH-Mediated Synthesis of N-Protected Amino Thioacids and Their Utility in Peptide Synthesis. J Org Chem 2014; 79:2377-83. [DOI: 10.1021/jo402872p] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Sachitanand M. Mali
- Department of Chemistry, Indian Institute of Science Education and Research, Dr. Homi Bhabha Road, Pune 411 008, India
| | - Hosahudya N. Gopi
- Department of Chemistry, Indian Institute of Science Education and Research, Dr. Homi Bhabha Road, Pune 411 008, India
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11
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Chen C, Huang Y, Xu L, Zheng Y, Xu H, Guo Q, Tian C, Li Y, Shi J. Thiol-assisted one-pot synthesis of peptide/protein C-terminal thioacids from peptide/protein hydrazides at neutral conditions. Org Biomol Chem 2014; 12:9413-8. [DOI: 10.1039/c4ob01885k] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
An efficient thiol-assisted one-pot synthesis of peptide/protein C-terminal thioacids was achieved by using peptide/protein hydrazides precursors at neutral pH and room temperature (about 20 °C).
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Affiliation(s)
- Chenchen Chen
- School of Medical Engineering
- School of Chemistry and Chemical Engineering
- Hefei University of Technology
- Hefei, China
- Department of Chemistry
| | - Yichao Huang
- Department of Chemistry
- Tsinghua University
- Beijing 100084, China
| | - Ling Xu
- Department of Chemistry
- University of Science and Technology of China
- China
| | - Yong Zheng
- Department of Chemistry
- University of Science and Technology of China
- China
| | - Huajian Xu
- School of Medical Engineering
- School of Chemistry and Chemical Engineering
- Hefei University of Technology
- Hefei, China
| | - Qingxiang Guo
- Department of Chemistry
- University of Science and Technology of China
- China
| | - Changlin Tian
- Department of Chemistry
- University of Science and Technology of China
- China
| | - Yiming Li
- School of Medical Engineering
- School of Chemistry and Chemical Engineering
- Hefei University of Technology
- Hefei, China
- Department of Chemistry
| | - Jing Shi
- Department of Chemistry
- University of Science and Technology of China
- China
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12
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Abstract
The chemical synthesis of peptides or small proteins is often an important step in many research projects and has stimulated the development of numerous chemical methodologies. The aim of this review is to give a substantial overview of the solid phase methods developed for the production or purification of polypeptides. The solid phase peptide synthesis (SPPS) technique has facilitated considerably the access to short peptides (<50 amino acids). However, its limitations for producing large homogeneous peptides have stimulated the development of solid phase covalent or non-covalent capture purification methods. The power of the native chemical ligation (NCL) reaction for protein synthesis in aqueous solution has also been adapted to the solid phase by the combination of novel linker technologies, cysteine protection strategies and thioester or N,S-acyl shift thioester surrogate chemistries. This review details pioneering studies and the most recent publications related to the solid phase chemical synthesis of large peptides and proteins.
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13
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Guan X, Chaffey PK, Zeng C, Tan Z. New Methods for Chemical Protein Synthesis. Top Curr Chem (Cham) 2014; 363:155-92. [DOI: 10.1007/128_2014_599] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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14
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Ollivier N, Raibaut L, Blanpain A, Desmet R, Dheur J, Mhidia R, Boll E, Drobecq H, Pira SL, Melnyk O. Tidbits for the synthesis ofbis(2-sulfanylethyl)amido (SEA) polystyrene resin, SEA peptides and peptide thioesters. J Pept Sci 2013; 20:92-7. [DOI: 10.1002/psc.2580] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2013] [Accepted: 10/06/2013] [Indexed: 12/26/2022]
Affiliation(s)
- Nathalie Ollivier
- UMR CNRS 8161; Pasteur Institute of Lille, Univ. Lille Nord de France; 1 rue du Pr Calmette 59021 Lille France
| | - Laurent Raibaut
- UMR CNRS 8161; Pasteur Institute of Lille, Univ. Lille Nord de France; 1 rue du Pr Calmette 59021 Lille France
| | - Annick Blanpain
- UMR CNRS 8161; Pasteur Institute of Lille, Univ. Lille Nord de France; 1 rue du Pr Calmette 59021 Lille France
| | - Rémi Desmet
- UMR CNRS 8161; Pasteur Institute of Lille, Univ. Lille Nord de France; 1 rue du Pr Calmette 59021 Lille France
| | - Julien Dheur
- UMR CNRS 8161; Pasteur Institute of Lille, Univ. Lille Nord de France; 1 rue du Pr Calmette 59021 Lille France
| | - Reda Mhidia
- UMR CNRS 8161; Pasteur Institute of Lille, Univ. Lille Nord de France; 1 rue du Pr Calmette 59021 Lille France
| | - Emmanuelle Boll
- UMR CNRS 8161; Pasteur Institute of Lille, Univ. Lille Nord de France; 1 rue du Pr Calmette 59021 Lille France
| | - Hervé Drobecq
- UMR CNRS 8161; Pasteur Institute of Lille, Univ. Lille Nord de France; 1 rue du Pr Calmette 59021 Lille France
| | - Silvain L. Pira
- UMR CNRS 8161; Pasteur Institute of Lille, Univ. Lille Nord de France; 1 rue du Pr Calmette 59021 Lille France
| | - Oleg Melnyk
- UMR CNRS 8161; Pasteur Institute of Lille, Univ. Lille Nord de France; 1 rue du Pr Calmette 59021 Lille France
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