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El-Sawy ER, Kirsch G. An Overview of Aplysinopsins: Synthesis and Biological Activities. Mar Drugs 2023; 21:md21050268. [PMID: 37233462 DOI: 10.3390/md21050268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 04/19/2023] [Accepted: 04/24/2023] [Indexed: 05/27/2023] Open
Abstract
Marine products are among the most promising sources of biologically active molecules. Aplysinopsins, tryptophan-derived marine natural products, were isolated from different natural marine sources including sponges, stony corals (hard corals) especially genus scleractinian, as well as sea anemone, in addition to one nudibranch. Aplysinopsins were reported to be isolated from different marine organisms related to various geographic areas such as Pacific, Indonesia, Caribbean, and Mediterranean regions. This review gives an up-to-date overview of marine alkaloid aplysinopsins: their various sources, their synthesis, and the fact that many aplysinopsin derivatives are biologically active compounds.
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Affiliation(s)
- Eslam R El-Sawy
- Chemistry of Natural Compounds Department, National Research Centre, Giza 12622, Egypt
| | - Gilbert Kirsch
- Laboratoire Lorrain de Chimie Moléculaire (L.2.C.M.), Université de Lorraine, 57050 Metz, France
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2
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Oger S, Duchemin N, Bendiab YM, Birlirakis N, Skiredj A, Rharrabti S, Jullian JC, Poupon E, Smietana M, Arseniyadis S, Evanno L. Expanding the 'aplysinospin cascade' through DNA-templated [2+2] photocycloaddition. Chem Commun (Camb) 2023; 59:4221-4224. [PMID: 36939749 DOI: 10.1039/d3cc00673e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2023]
Abstract
Inspired by the unique ability of nucleic acids to template chemical transformations that are otherwise impossible in solution, we embarked on the generalisation of our DNA-templated [2+2] photo-induced homo- and heterodimerization of aplysinopsins. Our process ensures a straightforward access to cyclobutane containing natural products and analogues thereof. Most importantly, this conceptual biomimetic achievement presents interesting arguments to build a biosynthetic scenario.
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Affiliation(s)
- Samuel Oger
- Université Paris-Saclay, CNRS, BioCIS, 17, Avenue des Sciences, 91400, Orsay, France.
| | - Nicolas Duchemin
- Queen Mary University of London, Department of Chemistry, Mile End Road, E1 4NS, London, UK.
| | - Yara Mayssa Bendiab
- Université Paris-Saclay, CNRS, BioCIS, 17, Avenue des Sciences, 91400, Orsay, France.
| | - Nicolas Birlirakis
- Département de Chimie, Ecole Normale Supérieure, PSL Research University, CNRS, Laboratoire des Biomolecules (LBM), 24 rue Lhomond, 75005, Paris, France
| | - Adam Skiredj
- Université Paris-Saclay, CNRS, BioCIS, 17, Avenue des Sciences, 91400, Orsay, France.
| | - Somia Rharrabti
- Université Paris-Saclay, CNRS, BioCIS, 17, Avenue des Sciences, 91400, Orsay, France.
| | | | - Erwan Poupon
- Université Paris-Saclay, CNRS, BioCIS, 17, Avenue des Sciences, 91400, Orsay, France.
| | - Michael Smietana
- Institut des Biomolécules Max Mousseron, Université de Montpellier, CNRS, ENSCM, 1919 Route de Mende, 34095, Montpellier, France.
| | - Stellios Arseniyadis
- Queen Mary University of London, Department of Chemistry, Mile End Road, E1 4NS, London, UK.
| | - Laurent Evanno
- Université Paris-Saclay, CNRS, BioCIS, 17, Avenue des Sciences, 91400, Orsay, France.
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3
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Yum JH, Sugiyama H, Park S. Harnessing DNA as a Designable Scaffold for Asymmetric Catalysis: Recent Advances and Future Perspectives. CHEM REC 2022; 22:e202100333. [PMID: 35312235 DOI: 10.1002/tcr.202100333] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 03/03/2022] [Accepted: 03/04/2022] [Indexed: 12/27/2022]
Abstract
Since the first report of DNAzyme by in vitro selection in 1994, catalytic DNA has investigated extensively, and their application has expanded continually in virtue of rapid advances in molecular biology and biotechnology. Nowadays, DNA is in the second prime time by way of DNA-based hybrid catalysts and DNA metalloenzymes in which helical chirality of DNA serves to asymmetric catalysis. DNA-based hybrid catalysts are attractive system to respond the demand of the times to pursuit green and sustainable society beyond traditional catalytic systems that value reaction efficiency. Herein, we highlight the recent advances and perspective of DNA-based hybrid catalysts with various aspects of DNA as a versatile scaffold for asymmetric synthesis. We hope that scientists in a variety of fields will be encouraged to join and promote remarkable evolution of this interesting research.
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Affiliation(s)
- Ji Hye Yum
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto, 606-8502, Japan
| | - Hiroshi Sugiyama
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto, 606-8502, Japan.,Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University, Yoshida-ushinomiyacho, Sakyo-ku, Kyoto, 606-8501, Japan
| | - Soyoung Park
- Immunology Frontier Research Center (iFReC), Osaka University, 3-1 Yamadaoka, Suita, 565-0871, Japan.,Research Institute for Microbial Diseases (RIMD), Osaka University, 3-1 Yamadaoka, Suita, 565-0871, Japan
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4
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Keel KL, Tepe JJ. Total Synthesis of Nortopsentin D via a Late-Stage Pinacol-like Rearrangement. Org Lett 2021; 23:5368-5372. [PMID: 34170714 DOI: 10.1021/acs.orglett.1c01681] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Nortopsentin D is part of a class of bis(indole) alkaloids known for their biological activity, including inhibitory activity in tumoral cells and antifungal activity. Herein we describe the first total synthesis of nortopsentin D, in which amidine and dione undergo a pivotal condensation and subsequent cyclization via a pinacol-like rearrangement. This synthesis represents a unique strategy for the formation of 5,5-disubstituted (4H)-imidazol-4-one containing natural products, many of which have yet to succumb to total synthesis.
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Affiliation(s)
- Katarina L Keel
- Michigan State University, Department of Chemistry, 578 South Shaw Lane, East Lansing, Michigan 48824, United States
| | - Jetze J Tepe
- Michigan State University, Department of Chemistry, 578 South Shaw Lane, East Lansing, Michigan 48824, United States
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5
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Kulkarni AS, Ramesh E, Srinivasa Reddy D. One‐Pot Oxidation of Secondary Alcohols to
α
‐Hydroxy Ketones: Application to Synthesis of Oxoaplysinopsin D, E, F, & G. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Akshay S. Kulkarni
- Organic Chemistry Division CSIR-National Chemical Laboratory Dr. Homi Bhabha Road Pune 411008 India
- Academy of Scientific and Innovative Research (AcSIR) Ghaziabad 201002 India
| | - Eagala Ramesh
- Organic Chemistry Division CSIR-National Chemical Laboratory Dr. Homi Bhabha Road Pune 411008 India
- CSIR-Indian Institute of Integrated Medicine Canal Road Jammu 180001 India
| | - D. Srinivasa Reddy
- Organic Chemistry Division CSIR-National Chemical Laboratory Dr. Homi Bhabha Road Pune 411008 India
- Academy of Scientific and Innovative Research (AcSIR) Ghaziabad 201002 India
- CSIR-Indian Institute of Integrated Medicine Canal Road Jammu 180001 India
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6
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Keel KL, Tepe J. The preparation of (4H)-imidazol-4-ones and their application in the total synthesis of natural products. Org Chem Front 2020; 7:3284-3311. [PMID: 33796321 DOI: 10.1039/d0qo00764a] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
(4H)-Imidazol-4-ones are an important scaffold for a variety of applications, including natural products, medicine, agriculture, and other applications. Over the years, there have been a number of preparations published for the synthesis of imidazol-4-ones. This review discusses the progress made on the synthesis of imidazol-4-ones, and their application towards the total synthesis of a range of imidazol-4-one containing natural products. Emphasis is made on areas of the field that still need progress.
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7
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Bastos Lemos Silva S, Beniddir MA, Gallard JF, Poupon E, Thomas OP, Evanno L. Chemical Insights into the Anchinopeptolide Series. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900625] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Siguara Bastos Lemos Silva
- BioCIS, Université Paris-Sud; Université Paris-Saclay; 92290 Châtenay-Malabry France
- Geoazur; UMR Université Nice Sophia Antipolis; 06560 Valbonne France
| | - Mehdi A. Beniddir
- BioCIS, Université Paris-Sud; Université Paris-Saclay; 92290 Châtenay-Malabry France
| | - Jean-François Gallard
- Jean-François Gallard, ICSN, Institut de Chimie des Substances Naturelles, CNRS UPR 2301; Université Paris-Saclay; France
| | - Erwan Poupon
- BioCIS, Université Paris-Sud; Université Paris-Saclay; 92290 Châtenay-Malabry France
| | - Olivier P. Thomas
- Geoazur; UMR Université Nice Sophia Antipolis; 06560 Valbonne France
- Marine Biodiscovery, School of Chemistry and Ryan Institute, College of Science, Room C212; National University of Ireland Galway; University Road H91TK33 Galway Ireland
| | - Laurent Evanno
- BioCIS, Université Paris-Sud; Université Paris-Saclay; 92290 Châtenay-Malabry France
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8
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Duchemin N, Skiredj A, Mansot J, Leblanc K, Vasseur J, Beniddir MA, Evanno L, Poupon E, Smietana M, Arseniyadis S. DNA‐Templated [2+2] Photocycloaddition: A Straightforward Entry into the Aplysinopsin Family of Natural Products. Angew Chem Int Ed Engl 2018; 57:11786-11791. [DOI: 10.1002/anie.201806357] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2018] [Indexed: 12/12/2022]
Affiliation(s)
- Nicolas Duchemin
- Queen Mary University of LondonSchool of Biological and Chemical Sciences Mile End Road London E1 4NS UK
| | - Adam Skiredj
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCISUniversité Paris-SudUniversité Paris-Saclay 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Justine Mansot
- Institut des Biomolécules Max MousseronCNRS, UMR 5247 Université de MontpellierENSCM Place Eugène Bataillon 34095 Montpellier France
| | - Karine Leblanc
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCISUniversité Paris-SudUniversité Paris-Saclay 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Jean‐Jacques Vasseur
- Institut des Biomolécules Max MousseronCNRS, UMR 5247 Université de MontpellierENSCM Place Eugène Bataillon 34095 Montpellier France
| | - Mehdi A. Beniddir
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCISUniversité Paris-SudUniversité Paris-Saclay 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Laurent Evanno
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCISUniversité Paris-SudUniversité Paris-Saclay 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Erwan Poupon
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCISUniversité Paris-SudUniversité Paris-Saclay 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Michael Smietana
- Institut des Biomolécules Max MousseronCNRS, UMR 5247 Université de MontpellierENSCM Place Eugène Bataillon 34095 Montpellier France
| | - Stellios Arseniyadis
- Queen Mary University of LondonSchool of Biological and Chemical Sciences Mile End Road London E1 4NS UK
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9
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Duchemin N, Skiredj A, Mansot J, Leblanc K, Vasseur JJ, Beniddir MA, Evanno L, Poupon E, Smietana M, Arseniyadis S. DNA-Templated [2+2] Photocycloaddition: A Straightforward Entry into the Aplysinopsin Family of Natural Products. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201806357] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Nicolas Duchemin
- Queen Mary University of London; School of Biological and Chemical Sciences; Mile End Road London E1 4NS UK
| | - Adam Skiredj
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCIS; Université Paris-Sud; Université Paris-Saclay; 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Justine Mansot
- Institut des Biomolécules Max Mousseron; CNRS, UMR 5247 Université de Montpellier; ENSCM; Place Eugène Bataillon 34095 Montpellier France
| | - Karine Leblanc
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCIS; Université Paris-Sud; Université Paris-Saclay; 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Jean-Jacques Vasseur
- Institut des Biomolécules Max Mousseron; CNRS, UMR 5247 Université de Montpellier; ENSCM; Place Eugène Bataillon 34095 Montpellier France
| | - Mehdi A. Beniddir
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCIS; Université Paris-Sud; Université Paris-Saclay; 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Laurent Evanno
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCIS; Université Paris-Sud; Université Paris-Saclay; 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Erwan Poupon
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCIS; Université Paris-Sud; Université Paris-Saclay; 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Michael Smietana
- Institut des Biomolécules Max Mousseron; CNRS, UMR 5247 Université de Montpellier; ENSCM; Place Eugène Bataillon 34095 Montpellier France
| | - Stellios Arseniyadis
- Queen Mary University of London; School of Biological and Chemical Sciences; Mile End Road London E1 4NS UK
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10
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Unified biomimetic assembly of voacalgine A and bipleiophylline via divergent oxidative couplings. Nat Chem 2017; 9:793-798. [DOI: 10.1038/nchem.2735] [Citation(s) in RCA: 64] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2016] [Accepted: 01/17/2017] [Indexed: 01/17/2023]
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11
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Abstract
This review defines symmetric molecules from a synthetic perspective and shows various strategies that take advantage of molecular symmetry to construct them.
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Affiliation(s)
- Wen-Ju Bai
- Department of Chemistry
- Stanford University
- Stanford
- USA
| | - Xiqing Wang
- College of Bioscience and Biotechnology
- Yangzhou University
- Yangzhou
- China
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12
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Skiredj A, Beniddir MA, Evanno L, Poupon E. Mimicking the Main Events of the Biosynthesis of Drimentines: Synthesis of Δ8′-Isodrimentine A and Related Compounds. European J Org Chem 2016. [DOI: 10.1002/ejoc.201600444] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Adam Skiredj
- BioCIS; CNRS; Univ. Paris-Sud; Université Paris-Saclay; 92290 Châtenay-Malabry France
| | - Mehdi A. Beniddir
- BioCIS; CNRS; Univ. Paris-Sud; Université Paris-Saclay; 92290 Châtenay-Malabry France
| | - Laurent Evanno
- BioCIS; CNRS; Univ. Paris-Sud; Université Paris-Saclay; 92290 Châtenay-Malabry France
| | - Erwan Poupon
- BioCIS; CNRS; Univ. Paris-Sud; Université Paris-Saclay; 92290 Châtenay-Malabry France
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13
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Abstract
This review covers the literature published in 2014 for marine natural products (MNPs), with 1116 citations (753 for the period January to December 2014) referring to compounds isolated from marine microorganisms and phytoplankton, green, brown and red algae, sponges, cnidarians, bryozoans, molluscs, tunicates, echinoderms, mangroves and other intertidal plants and microorganisms. The emphasis is on new compounds (1378 in 456 papers for 2014), together with the relevant biological activities, source organisms and country of origin. Reviews, biosynthetic studies, first syntheses, and syntheses that lead to the revision of structures or stereochemistries, have been included.
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Affiliation(s)
- John W Blunt
- Department of Chemistry, University of Canterbury, Christchurch, New Zealand.
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14
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Berlinck RGS, Romminger S. The chemistry and biology of guanidine natural products. Nat Prod Rep 2016; 33:456-90. [DOI: 10.1039/c5np00108k] [Citation(s) in RCA: 75] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
The present review discusses the isolation, structure determination, synthesis, biosynthesis and biological activities of secondary metabolites bearing a guanidine group.
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Affiliation(s)
| | - Stelamar Romminger
- Instituto de Química de São Carlos
- Universidade de São Paulo
- São Carlos
- Brazil
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15
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Beniddir MA, Evanno L, Joseph D, Skiredj A, Poupon E. Emergence of diversity and stereochemical outcomes in the biosynthetic pathways of cyclobutane-centered marine alkaloid dimers. Nat Prod Rep 2016; 33:820-42. [DOI: 10.1039/c5np00159e] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
A deep-sea dive into the ecology and chemistry of surprising cyclobutanes from marine invertebrates.
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Affiliation(s)
| | - Laurent Evanno
- BioCIS
- Univ. Paris-Sud
- CNRS
- Université Paris-Saclay
- Châtenay-Malabry
| | - Delphine Joseph
- BioCIS
- Univ. Paris-Sud
- CNRS
- Université Paris-Saclay
- Châtenay-Malabry
| | - Adam Skiredj
- BioCIS
- Univ. Paris-Sud
- CNRS
- Université Paris-Saclay
- Châtenay-Malabry
| | - Erwan Poupon
- BioCIS
- Univ. Paris-Sud
- CNRS
- Université Paris-Saclay
- Châtenay-Malabry
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16
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Kitamura M, Yuasa R, Van Vranken DL. Synthesis of the cyclic prenylguanidine nitensidine E using a palladium-catalyzed carbenylative amination. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2014.10.140] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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17
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Poupon E, Gravel E. Manipulating Simple Reactive Chemical Units: Fishing for Alkaloids from Complex Mixtures. Chemistry 2015; 21:10604-15. [DOI: 10.1002/chem.201500366] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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