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Zaccaria F, Sian L, Zuccaccia C, Macchioni A. Ion pairing in transition metal catalyzed olefin polymerization. ADVANCES IN ORGANOMETALLIC CHEMISTRY 2020. [DOI: 10.1016/bs.adomc.2019.08.001] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Zhang YH, Huang T, Chen L, Xu Y, Hu Y, Hu LD, Cai Y, Kong X. Identifying and analyzing different cancer subtypes using RNA-seq data of blood platelets. Oncotarget 2017; 8:87494-87511. [PMID: 29152097 PMCID: PMC5675649 DOI: 10.18632/oncotarget.20903] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2017] [Accepted: 08/16/2017] [Indexed: 12/11/2022] Open
Abstract
Detection and diagnosis of cancer are especially important for early prevention and effective treatments. Traditional methods of cancer detection are usually time-consuming and expensive. Liquid biopsy, a newly proposed noninvasive detection approach, can promote the accuracy and decrease the cost of detection according to a personalized expression profile. However, few studies have been performed to analyze this type of data, which can promote more effective methods for detection of different cancer subtypes. In this study, we applied some reliable machine learning algorithms to analyze data retrieved from patients who had one of six cancer subtypes (breast cancer, colorectal cancer, glioblastoma, hepatobiliary cancer, lung cancer and pancreatic cancer) as well as healthy persons. Quantitative gene expression profiles were used to encode each sample. Then, they were analyzed by the maximum relevance minimum redundancy method. Two feature lists were obtained in which genes were ranked rigorously. The incremental feature selection method was applied to the mRMR feature list to extract the optimal feature subset, which can be used in the support vector machine algorithm to determine the best performance for the detection of cancer subtypes and healthy controls. The ten-fold cross-validation for the constructed optimal classification model yielded an overall accuracy of 0.751. On the other hand, we extracted the top eighteen features (genes), including TTN, RHOH, RPS20, TRBC2, in another feature list, the MaxRel feature list, and performed a detailed analysis of them. The results indicated that these genes could be important biomarkers for discriminating different cancer subtypes and healthy controls.
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Affiliation(s)
- Yu-Hang Zhang
- Department of General Surgery, Shanghai Jiao Tong University Affiliated Sixth People's Hospital, Shanghai 200233, People's Republic of China.,Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 200031, People's Republic of China
| | - Tao Huang
- Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 200031, People's Republic of China
| | - Lei Chen
- College of Information Engineering, Shanghai Maritime University, Shanghai 201306, People's Republic of China
| | - YaoChen Xu
- Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, People's Republic of China
| | - Yu Hu
- Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 200031, People's Republic of China
| | - Lan-Dian Hu
- Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 200031, People's Republic of China
| | - Yudong Cai
- School of Life Sciences, Shanghai University, Shanghai 200444, People's Republic of China
| | - Xiangyin Kong
- Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 200031, People's Republic of China
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Geer AM, López JA, Ciriano MA, Tejel C. Agostic versus Terminal Ethyl Rhodium Complexes: A Combined Experimental and Theoretical Study. Organometallics 2016. [DOI: 10.1021/acs.organomet.6b00036] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ana M. Geer
- Departamento
Química
Inorgánica, Instituto de Síntesis Química y Catálisis
Homogénea (ISQCH), CSIC-Universidad de Zaragoza, Pedro Cerbuna
12, 50009-Zaragoza, Spain
| | - José A. López
- Departamento
Química
Inorgánica, Instituto de Síntesis Química y Catálisis
Homogénea (ISQCH), CSIC-Universidad de Zaragoza, Pedro Cerbuna
12, 50009-Zaragoza, Spain
| | - Miguel A. Ciriano
- Departamento
Química
Inorgánica, Instituto de Síntesis Química y Catálisis
Homogénea (ISQCH), CSIC-Universidad de Zaragoza, Pedro Cerbuna
12, 50009-Zaragoza, Spain
| | - Cristina Tejel
- Departamento
Química
Inorgánica, Instituto de Síntesis Química y Catálisis
Homogénea (ISQCH), CSIC-Universidad de Zaragoza, Pedro Cerbuna
12, 50009-Zaragoza, Spain
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Pan Y, Xu X, Wei NN, Hao C, Zhu X, He G. DFT study on 1,7-octadiene polymerization catalyzed by a non-bridged half-titanocene system. RSC Adv 2016. [DOI: 10.1039/c6ra14867k] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
For (η5-C5Me5)TiCl2(O-2,6-iPr2C6H3)/MAO system, the selectivity of repeated insertion and intramolecular cyclization of 1,7-octadiene were explored in detail by DFT method.
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Affiliation(s)
- Yu Pan
- State Key Laboratory of Fine Chemicals
- School of Petroleum and Chemical Engineering
- Dalian University of Technology
- Panjin 124221
- P. R. China
| | - Xiaowei Xu
- State Key Laboratory of Fine Chemicals
- School of Petroleum and Chemical Engineering
- Dalian University of Technology
- Panjin 124221
- P. R. China
| | - Ning-Ning Wei
- School of Life Science and Medicine
- Dalian University of Technology
- Panjin 124221
- P. R. China
| | - Ce Hao
- State Key Laboratory of Fine Chemicals
- School of Petroleum and Chemical Engineering
- Dalian University of Technology
- Panjin 124221
- P. R. China
| | - Xiaodong Zhu
- SINOPEC Zhenhai Refining and Chemical Company
- Ningbo 315207
- P. R. China
| | - Gaohong He
- State Key Laboratory of Fine Chemicals
- School of Petroleum and Chemical Engineering
- Dalian University of Technology
- Panjin 124221
- P. R. China
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Dunlop-Brière AF, Baird MC, Budzelaar PHM. [Cp2TiCH2CH2(SiEt2CHMe2)]+, an Alkyl-titanocene(IV) Complex Containing an Unconventional Ti←C(β)-Si Mode of Bonding. Organometallics 2015. [DOI: 10.1021/acs.organomet.5b00675] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Michael C. Baird
- The
Department of Chemistry, Queen’s University, Kingston, Ontario K7L 3N6, Canada
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