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Shen J, Chen Q, Li Z, Zheng Q, Xu Y, Zhou H, Mao H, Shen Q, Liu P. Proteomic and metabolomic analysis of Nicotiana benthamiana under dark stress. FEBS Open Bio 2022; 12:231-249. [PMID: 34792288 PMCID: PMC8727940 DOI: 10.1002/2211-5463.13331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Revised: 10/15/2021] [Accepted: 11/13/2021] [Indexed: 11/08/2022] Open
Abstract
Exposure to extended periods of darkness is a common source of abiotic stress that significantly affects plant growth and development. To understand how Nicotiana benthamiana responds to dark stress, the proteomes and metabolomes of leaves treated with darkness were studied. In total, 5763 proteins and 165 primary metabolites were identified following dark treatment. Additionally, the expression of autophagy-related gene (ATG) proteins was transiently upregulated. Weighted gene coexpression network analysis (WGCNA) was utilized to find the protein modules associated with the response to dark stress. A total of four coexpression modules were obtained. The results indicated that heat-shock protein (HSP70), SnRK1-interacting protein 1, 2A phosphatase-associated protein of 46 kDa (Tap46), and glutamate dehydrogenase (GDH) might play crucial roles in N. benthamiana's response to dark stress. Furthermore, a protein-protein interaction (PPI) network was constructed and top-degreed proteins were predicted to identify potential key factors in the response to dark stress. These proteins include isopropylmalate isomerase (IPMI), eukaryotic elongation factor 5A (ELF5A), and ribosomal protein 5A (RPS5A). Finally, metabolic analysis suggested that some amino acids and sugars were involved in the dark-responsive pathways. Thus, these results provide a new avenue for understanding the defensive mechanism against dark stress at the protein and metabolic levels in N. benthamiana.
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Affiliation(s)
- Juan‐Juan Shen
- College of ChemistryZhengzhou UniversityZhengzhouChina
- Chemistry Research Institution of Henan Academy of SciencesZhengzhouChina
| | - Qian‐Si Chen
- Zhengzhou Tobacco Research Institute of CNTCZhengzhouChina
| | - Ze‐Feng Li
- Zhengzhou Tobacco Research Institute of CNTCZhengzhouChina
| | - Qing‐Xia Zheng
- Zhengzhou Tobacco Research Institute of CNTCZhengzhouChina
| | - Ya‐Long Xu
- Zhengzhou Tobacco Research Institute of CNTCZhengzhouChina
| | - Hui‐Na Zhou
- Zhengzhou Tobacco Research Institute of CNTCZhengzhouChina
| | - Hong‐Yan Mao
- College of ChemistryZhengzhou UniversityZhengzhouChina
| | - Qi Shen
- College of ChemistryZhengzhou UniversityZhengzhouChina
| | - Ping‐Ping Liu
- Zhengzhou Tobacco Research Institute of CNTCZhengzhouChina
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Fei J, Wang YS, Zhou Q, Gu JD. Cloning and expression analysis of HSP70 gene from mangrove plant Kandelia obovata under cold stress. ECOTOXICOLOGY (LONDON, ENGLAND) 2015; 24:1677-85. [PMID: 25980488 DOI: 10.1007/s10646-015-1484-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 05/08/2015] [Indexed: 05/16/2023]
Abstract
Heat shock protein 70 (HSP70), the primary member of the HSPs that play various stress-protective roles in plants. In this study, a hsp70 gene of Kandelia obovata (KoHsp70) was cloned by rapid amplification of cDNA ends (RACE). The full-length of KoHsp70 was 2255 bp, consisting of a 5'-terminal untranslated region (UTR) of 118 bp, a 3'-terminal UTR of 178 bp, and an open reading frame (ORF) of 1959 bp. The ORF (KoHSP70) was predicted to encode a polypeptide of 652 amino acids with a theoretical molecular weight (MW) of 71.40 kDa and a pI of 5.16. The amino acid sequence analysis revealed that the KoHSP70 contained three conserved regions of HSP70 family, a bipartite nuclear localization signal sequences (NLS), an ATP/GTP-binding site motif and a cytoplasmic characteristic motif (EEVD). Homology analysis indicated that KoHSP70 shared 96.0 % identity with the known HSP70 (Gossypium hirsutum). Bioinformatics analysis indicated that the KoHSP70 was hydrophilic and had no signal peptide or transmembrane region. The mRNA expression of KoHsp70 kept relatively stable at first and then increased significantly after 48 h cold stress, and reached the highest level at 168 h after cold treatment. The results indicated that the KoHsp70 was a stress-inducible gene that might play a role in cold stress-protective response and in coping with environmental and biological stresses for K. obovata. This study provided a basis to further study the mechanism of anti-adverseness and expression characteristics under stress conditions of K. obovata.
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Affiliation(s)
- Jiao Fei
- State Key Laboratory of Tropical Oceanography, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, China
| | - You-Shao Wang
- State Key Laboratory of Tropical Oceanography, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, China.
- Daya Bay Marine Biology Research Station, Chinese Academy of Sciences, Shenzhen, 518121, China.
| | - Qiao Zhou
- State Key Laboratory of Tropical Oceanography, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, China
| | - Ji-Dong Gu
- Laboratory of Environmental Toxicology, Department of Ecology & Biodiversity, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
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Mulaudzi-Masuku T, Mutepe RD, Mukhoro OC, Faro A, Ndimba B. Identification and characterization of a heat-inducible Hsp70 gene from Sorghum bicolor which confers tolerance to thermal stress. Cell Stress Chaperones 2015; 20:793-804. [PMID: 26072391 PMCID: PMC4529866 DOI: 10.1007/s12192-015-0591-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2015] [Revised: 04/10/2015] [Accepted: 04/13/2015] [Indexed: 11/24/2022] Open
Abstract
This study describes the first detailed molecular characterization of the heat shock protein 70 (Hsp70) gene from Sorghum bicolor, MN1618 designated as SbHsp70-1. The full-length cDNA of SbHsp70-1 consists of 2524 bp with a 1950 bp open reading frame, which encodes a protein of 649 amino acids. SbHsp70-1 is a cytoplasmic protein with high homology to other plant Hsp70s, especially grain crops. Recombinant SbHsp70-1 was able to bind and hydrolyse ATP in a dose-dependent manner, suggesting that SbHsp70-1 functions as an ATPase. Immunoblot assays showed that the expression of SbHsp70-1 is induced at temperatures of 37, 45, and 4 °C but reduced at 42 °C. In addition, the SbHsp70-1 mRNA transcript is constitutively expressed in both leaves and stem but is significantly increased upon heat shock at 42 °C. Upon cold shock at 4 °C, SbHsp70-1 mRNA transcript level increased in the leaf, but no significant change was observed in the stem. In addition, expression of the pET28a-SbHsp70-1 construct in Escherichia coli cells under heat stress resulted in their survival even at higher temperature (65 °C). Our results suggest that SbHsp70-1 is a heat-inducible protein that confer thermal tolerance to bacterial cells and can be claimed as a promising target to study stress tolerance in crops.
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Affiliation(s)
- Takalani Mulaudzi-Masuku
- />Proteomics Research and Services Unit, Department of Biotechnology, University of the Western Cape, Level 2—New Life Sciences Building, Modderdam Road, Private Bag X17, Bellville, 7535 Cape Town South Africa
- />Proteomics Unit, Agricultural Research Council, Infruitec-Nietvoorbij, Private Bag X5026, Stellenbosch, 7599 South Africa
| | - Rendani Daphney Mutepe
- />Proteomics Research and Services Unit, Department of Biotechnology, University of the Western Cape, Level 2—New Life Sciences Building, Modderdam Road, Private Bag X17, Bellville, 7535 Cape Town South Africa
- />Proteomics Unit, Agricultural Research Council, Infruitec-Nietvoorbij, Private Bag X5026, Stellenbosch, 7599 South Africa
| | - Ofhani Christopher Mukhoro
- />Proteomics Research and Services Unit, Department of Biotechnology, University of the Western Cape, Level 2—New Life Sciences Building, Modderdam Road, Private Bag X17, Bellville, 7535 Cape Town South Africa
| | - Andrew Faro
- />Proteomics Research and Services Unit, Department of Biotechnology, University of the Western Cape, Level 2—New Life Sciences Building, Modderdam Road, Private Bag X17, Bellville, 7535 Cape Town South Africa
| | - Bongani Ndimba
- />Proteomics Research and Services Unit, Department of Biotechnology, University of the Western Cape, Level 2—New Life Sciences Building, Modderdam Road, Private Bag X17, Bellville, 7535 Cape Town South Africa
- />Proteomics Unit, Agricultural Research Council, Infruitec-Nietvoorbij, Private Bag X5026, Stellenbosch, 7599 South Africa
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Duan YH, Guo J, Ding K, Wang SJ, Zhang H, Dai XW, Chen YY, Govers F, Huang LL, Kang ZS. Characterization of a wheat HSP70 gene and its expression in response to stripe rust infection and abiotic stresses. Mol Biol Rep 2010; 38:301-7. [PMID: 20349142 DOI: 10.1007/s11033-010-0108-0] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2009] [Accepted: 03/16/2010] [Indexed: 01/06/2023]
Abstract
Members of the family of 70-kD heat shock proteins (HSP70 s) play various stress-protective roles in plants. In this study, a wheat HSP70 gene was isolated from a suppression subtractive hybridization (SSH) cDNA library of wheat leaves infected by Puccinia striiformis f. sp. tritici. The gene, that was designated as TaHSC70, was predicted to encode a protein of 690 amino acids, with a molecular mass of 73.54 KDa and a pI of 5.01. Further analysis revealed the presence of a conserved signature that is characteristic for HSP70s and phylogenetic analysis demonstrated that TaHSC70 is a homolog of chloroplast HSP70s. TaHSC70 mRNA was present in leaves of both green and etiolated wheat seedlings and in stems and roots. The transcript level in roots was approximately threefold less than in leaves but light-dark treatment did not charge TaHSC70 expression. Following heat shock of wheat seedlings at 40°C, TaHSC70 expression increased in leaves of etiolated seedlings but remained stable at the same level in green seedlings. In addition, TaHSC70 was differentially expressed during an incompatible and compatible interaction with wheat-stripe rust, and there was a transient increase in expression upon treatment with methyl jasmonate (MeJA) treatment. Salicylic acid (SA), ethylene (ET) and abscisic acid (ABA) treatments had no influence on TaHSC70 expression. These results suggest that TaHSC70 plays a role in stress-related responses, and in defense responses elicited by infection with stripe rust fungus and does so via a JA-dependent signal transduction pathway.
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Affiliation(s)
- Ying-Hui Duan
- College of Plant Protection and Shaanxi Key Laboratory of Molecular Biology for Agriculture, Northwest A & F University, Yangling, 712100, Shaanxi, People's Republic of China
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Zhang ZL, Zhu JH, Zhang QQ, Cai YB. Molecular characterization of an ethephon-induced Hsp70 involved in high and low-temperature responses in Hevea brasiliensis. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2009; 47:954-9. [PMID: 19577934 DOI: 10.1016/j.plaphy.2009.06.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2008] [Revised: 05/04/2009] [Accepted: 06/05/2009] [Indexed: 05/08/2023]
Abstract
Hsp70s have been shown to play important roles in helping cells to cope with adverse environments, especially in response to temperature. In this study a novel ethephon-induced Hsp gene, designated as HbHsp70, was isolated from Hevea brasiliensis. The HbHsp70 cDNA contained a 1965 bp open reading frame encoding 655 amino acids. The deduced HbHsp70 protein showed high identities to Hsp70s from other plants. Expression studies revealed more significant accumulation of HbHsp70 transcripts in leaves and stems than in roots, barks and latex. The transcription of HbHsp70 was induced by ethephon, heat treatment and low temperature stress, whereas jasmonic acid had little effects. Recombinant HbHsp70 was expressed in Escherichia coli and purified by Ni-NTA affinity chromatography. Measuring the light scattering of luciferase (Luc) revealed that HbHsp70 prevents the aggregation of luc during high-temperature stress. In vitro experiments showed that HbHsp70 had protective functions not only against heat stress but also against chilling stress. All these data suggest that HbHsp70 may play roles in responses to heat shock and low temperature in H. brasiliensis.
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Affiliation(s)
- Zhi-Li Zhang
- Key Laboratory of Tropical Crop Biotechnology, Ministry of Agriculture, Institute of Tropical Biosciences and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.
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