Optical slicing and 3-D characterization of hippocampal capillaries in the rat visualized by autometallographic silver enhancement of colloidal gold particles

Non-rigid landmark-based large-scale image registration in 3-D reconstruction of mouse and rat kidney nephrons

BACKGROUND

Serial histological sections are suffering from mechanical distortions that disturb the reconstruction of 3-D objects. We have corrected such artifacts with a non-rigid landmark-based method that respects the original geometry in the tissue block. The method is exemplified on a large scale in the registration of semi-thin serial sections of the mouse and rat kidneys, and has been tested on FFPE-sections.

AIM

In this study of mouse and rat kidneys, we have measured and characterized the deformations introduced in the preparation of 2.5-μm-thick Epon sections and then eliminated them by a landmark-based non-rigid transformation (NRT).

METHODS

We obtained 2.5-μm-thick serial Epon sections from three mouse kidneys and three rat kidneys for 3-D reconstruction of the nephron tubules. First, the images from 3000 serial mouse and 13,000 serial rat sections underwent a classic rigid registration (CRR), and the distortions were measured and indexed. The section images underwent a further NRT in order to compensate for the deformations. The NRT used is a classic interactive landmark-based approach. The quality of the NRT was verified by comparing the geometry of the transformed images with corresponding block images.

RESULTS

After CRR, the 2.5-μm-thick sections had a linear deformation of up to 2%, the tubular lengths were overestimated with up to 1.5×, and it was most difficult to trace the tubules from section to section. After the additional NRT, the geometry of the images reflected the original geometry in the block, the tubular lengths were no longer overestimated, and the NRT highly facilitated the tracing of the tubular system.

CONCLUSIONS

NRT has facilitated the tracing of the tubular system in kidneys, a tracing, which would otherwise have been most difficult to perform. NRT has yielded substantial new knowledge to segmental and spatial nephron organization in the mouse and rat kidneys.

Slice cultures as a model to study neurovascular coupling and blood brain barrier in vitro

Proper neuronal functioning depends on a strictly regulated interstitial environment and tight coupling of neuronal and metabolic activity involving adequate vascular responses. These functions take place at the blood brain barrier (BBB) composed of endothelial cells, basal lamina covered with pericytes, and the endfeet of perivascular astrocytes. In conventional in vitro models of the BBB, some of these components are missing. Here we describe a new model system for studying BBB and neurovascular coupling by using confocal microscopy and fluorescence staining protocols in organotypic hippocampal slice cultures. An elaborated network of vessels is retained in culture in spite of the absence of blood flow. Application of calcein-AM either from the interstitial or from the luminal side resulted in different staining patterns indicating the maintenance of a barrier. By contrast, the ethidium derivative MitoSox penetrated perivascular basal lamina and revealed free radical formation in contractile cells embracing the vessels, likely pericytes.

Stereoscopic study on capillary density of early brain oedema in a dog postburn model

BACKGROUND

After severe burn, the effective circulating blood volume decreases drastically due to massive body fluid loss, and blood redistribution occurs to maintain sufficient blood supply to vital organs. Blood perfusion of brain tissue changes and the permeability of the blood brain barrier increases due to ischaemia and hypoxia, which results in brain oedema. The goal of this study was to explore the changes of cerebral blood flow during the brain oedema at the early stage of severe burn.

METHODS

Twenty-six dogs were randomly divided into control and 6, 12, 18, and 24 PBH groups. The manifestation of MRI and histopathology, changes of brain water content were investigated; the shapes and distribution of the cerebral capillaries were observed with the endogenous AKP histochemical staining method and image analysis technique. The volume, surface, and length fractions of cerebral capillaries were tested and analysed with a stereographic method in each group, respectively.

RESULTS

The earliest changes of cerebral oedema were found at 12 PBH with MRI, which showed the brain swelling as characteristic of cerebral morphological changes. The decrease of SIR on T(1)WI was not observed until it was above 10%. Signal of T(2)WI increased for 8.29% at 24 PBH. Histological changes were observed as early as 6h after burn, accompanied by swelling of endothelial cells and peri-vascular astrocytes, vacuolation took place in neurons at 12h after burn, necrosis of different degrees in capillary endothelium, neurons, and axons. Increase in cerebral water content was noted at 6h postburn, and it was the most marked in 24 postburn group.The distributional density of capillaries became thicker at 6h and 12h postburn, the shapes were normal. The capillaries became sparser at 18h, and almost disappeared from view, only a few ends of capillaries in the shape of vine were seen at 24h postburn. The percentages of capillary volume, surface, and length fractions were increased at 6h and 12h, but decreased at 18h and reached the lowest point at 24h postburn (P<0.05).

CONCLUSION

We suggest that the changes of cerebral blood flow might play an important role in the pathogenesis of brain oedema in the early stage of severe burn.

Low noise electron microscopy by merging multiple images digitized from conventional films with reference to the mouse kidney

In a conventional transmission electron microscope system, the resolution is regarded as an absolute limitation, that is, 0.2 nm in theory and 0.6 nm in sections of biological materials. However, in an oversampled system, this limitation can be broken. In the present study, 60-nm-thick Epon sections from a mouse kidney were used. From these sections tight junctions located in the distal tubule were selected as test objects. Sets of up to 15 electron microscope images of the same target were recorded on negatives at x10,000, x13,000, and x63,000, respectively. The recorded films were digitized using a light microscope equipped with a digital camera. In each set the images were expanded, aligned, and merged into a more highly resolved output image. Each output image revealed details in the tight junction, which were not visible at the original magnifications. Two different sizes of colloidal gold particles (10 nm and 1 nm) conjugated with an immunoglobin G (IgG) served as references. With this improvement of resolution, it becomes possible to inspect some barely visible biologic (virus) particles and structures, such as glycogen and free ribosomes in their native environment.

Extending the resolution of light microscopy and electron microscopy digitized images with reference to cellular changes after in vivo low oxygen exposure

When processing frame-grabbed images from light microscopy (LM) and electron microscopy (EM), even a state-of-the-art digital camera is the weakest link between the microscope and the image processor. Details, which can be seen directly in the ocular at LM and in a negative recorded at EM, will not necessarily be represented in the frame-grabbed images. Because of this, there is a tendency to prefer a higher magnification at the expense of overview, i.e. only smaller areas are described. We find that the inadequacy of the camera can be overcome by taking multiple images of the same object, and align, expand, and add them into a more highly resolved image. At the LM level, the method has proved useful for describing the relation of the zinc pattern versus local in vivo oxygen measurements. At the EM level, we show that it is possible to achieve information about the spatial conditions in a given area, and the method may have applications on, e.g., visualization of ultra-small antibody-bound gold particles. The method can be performed on color and black and white images at any magnification and it has been tested in Adobe Photoshop (4.0 and higher) in WINDOWS 95, 98, and 2000.

Correction methods for three-dimensional reconstructions from confocal images: I. Tissue shrinking and axial scaling

We show here, using locust wholemount ganglia as an example, that scaling artifacts in three-dimensional reconstructions from confocal microscopic images due to refractive index mismatch in the light path and tissue shrinking, can account for dramatic errors in measurements of morphometric values. Refractive index mismatch leads to considerable alteration of the axial dimension, and true dimensions must be restored by rescaling the Z-axis of the image stack. The appropriate scaling factor depends on the refractive indices of the media in the light path and the numerical aperture of the objective used and can be determined by numerical simulations, as we show here. In addition, different histochemical procedures were tested in regard to their effect on tissue dimensions. Reconstructions of scans at different stages of these protocols show that shrinking can be avoided prior to clearing when dehydrating ethanol series are carefully applied. Fixation and mismatching buffer osmolarity have no effect. We demonstrate procedures to reduce artifacts during mounting and clearing in methyl salicylate, such that only isometric shrinkage occurs, which can easily be corrected by rescaling the image dimensions. Glycerol-based clearing agents produced severe anisometric and nonlinear shrinkage and we could not find a way to overcome this.