Photochemical concepts on the origin of biomolecular asymmetry

Structural and Electronic Chirality in Inorganic Crystals: from Construction to Application

Chirality represents a fundamental characteristic inherent in nature, playing a pivotal role in the emergence of homochirality and the origin of life. While the principles of chirality in organic chemistry are well-documented, the exploration of chirality within inorganic crystal structures continues to evolve. This ongoing development is primarily due to the diverse nature of crystal/amorphous structures in inorganic materials, along with the intricate symmetrical and asymmetrical relationships in the geometry of their constituent atoms. In this review, we commence with a summary of the foundational concept of chirality in molecules and solid states matters. This is followed by an introduction of structural chirality and electronic chirality in three-dimensional and two-dimensional inorganic materials. The construction of chirality in inorganic materials is classified into physical photolithography, wet-chemistry method, self-assembly, and chiral imprinting. Highlighting the significance of this field, we also summarize the research progress of chiral inorganic materials for applications in optical activity, enantiomeric recognition and chiral sensing, selective adsorption and enantioselective separation, asymmetric synthesis and catalysis, and chirality-induced spin polarization. This review aims to provide a reference for ongoing research in chiral inorganic materials and potentially stimulate innovative strategies and novel applications in the realm of chirality.

Electrochirogenesis: The Possible Role of Low-Energy Spin-Polarized Electrons in Creating Homochirality

Electrochirogenesis deals with the induction of chirality by polarized electrons of which those with low energy (<15 eV) are seen to be the most effective. Possible sources of such electrons in the prebiotic universe are discussed and several examples where chiral induction by these electrons have been demonstrated are given. Finally, some possible scenarios where electrochirogenesis could have played a role in forming a chiral imbalance in a prebiotic setting have been speculated on and some possible future areas of research proposed.

Chirality, photochemistry and the detection of amino acids in interstellar ice analogues and comets

The primordial appearance of chiral amino acids was an essential component of the asymmetric evolution of life on Earth. In this tutorial review we will explore the original life-generating, symmetry-breaking event and summarise recent thoughts on the origin of enantiomeric excess in the universe. We will then highlight the transfer of asymmetry from chiral photons to racemic amino acids and elucidate current experimental data on the photochemical synthesis of amino and diamino acid structures in simulated interstellar and circumstellar ice environments. The chirality inherent within actual interstellar (cometary) ice environments will be considered in this discussion: in 2014 the Rosetta Lander Philae onboard the Rosetta space probe is planned to detach from the orbiter and soft-land on the surface of the nucleus of comet 67P/Churyumov-Gerasimenko. It is equipped for the in situ enantioselective analysis of chiral prebiotic organic species in cometary ices. The scientific design of this mission will therefore be presented in the context of analysing the formation of amino acid structures within interstellar ice analogues as a means towards furthering understanding of the origin of asymmetric biological molecules.

Spin-polarized electron induced asymmetric reactions in chiral molecules

Understanding the origin of chirality in nature has been an active area of research since the time of Pasteur. In this chapter we examine one possible route by which this asymmetry could have arisen, namely chiral-specific chemistry induced by spin-polarized electrons. The various sources of spin-polarized electrons (parity violation, photoemission, and secondary processes) are discussed. Experiments aimed at exploring these interactions are reviewed starting with those based on the Vester-Ulbricht hypothesis through recent studies of spin polarized secondary electrons from a magnetic substrate. We will conclude with a discussion of possible new avenues of research that could impact this area.

Theoretical investigations into the enantiomeric and racemic forms of α-(trifluoromethyl)lactic acid

There are many different hypotheses on the origin of biomolecular homochirality. One possible scenario concerns the enantiomeric enrichment of a nearly racemic solid via self-disproportionation of enantiomers. In particular, in a recent paper Soloshonok and co-workers showed a first example of optical self-purification of α-(trifluoromethyl)lactic acid by sublimation [V. A. Soloshonok et al., J. Am. Chem. Soc. 2007, 129, 12112]. Here we present detailed theoretical studies of α-(trifluoromethyl)lactic acid in the solid state as well as in the gas-phase dimeric form. The calculations of energy differences between dimers show that in the solid state the enantiomeric pure compound is energetically preferred, while in the gas phase the equilibrium shifts towards the racemic mixture although thermodynamic corrections cannot be neglected, thus providing a detailed microscopic explanation for the enantio-purification process for the first time.

Extended high circular polarization in the Orion massive star forming region: implications for the origin of homochirality in the solar system

We present a wide-field (approximately 6' x 6') and deep near-infrared (K(s) band: 2.14 mum) circular polarization image in the Orion nebula, where massive stars and many low-mass stars are forming. Our results reveal that a high circular polarization region is spatially extended (approximately 0.4 pc) around the massive star-forming region, the BN/KL nebula. However, other regions, including the linearly polarized Orion bar, show no significant circular polarization. Most of the low-mass young stars do not show detectable extended structure in either linear or circular polarization, in contrast to the BN/KL nebula. If our solar system formed in a massive star-forming region and was irradiated by net circularly polarized radiation, then enantiomeric excesses could have been induced, through asymmetric photochemistry, in the parent bodies of the meteorites and subsequently delivered to Earth. These could then have played a role in the development of biological homochirality on Earth.

Chiral-selective chemistry induced by spin-polarized secondary electrons from a magnetic substrate

We demonstrate for the first time that low-energy spin-polarized secondary electrons, produced by irradiation of a magnetic substrate, can induce chiral-selective chemistry. Our approach was to perform detailed measurements of the reaction rate for x-ray induced, secondary electron photolysis of a model chiral compound, (R)- or (S)-2-butanol, adsorbed on a magnetized Permalloy substrate. The results showed that there is an enhancement of approximately 10% in the rate of CO bond cleavage that depends on the chirality of the molecule and the spin polarization of the substrate secondary electrons.

First experimental evidence for the preferential stabilization of the natural D- over the nonnatural L-configuration in nucleic acids

The homochirality of biomolecules is a prerequisite for the origin and evolution of terrestrial life. The unique selection of D-monosaccharides, in particular, D-ribose in RNA and D-deoxyribose in DNA, leads to the construction of proteins by L-amino acids. This points to the exclusive role of stereoselectivity in the most important physiological processes. So far, there is no experimental confirmation for the theoretical calculations of the energy differences between enantiomers used for the explanation of the stereoselection of biomolecules. Therefore, the question of why nature prefers one configuration over the other still lacks a definitive answer. Here, we present the first experimental evidence that the D-enantiomer of RNA has a different electronic structure compared to the corresponding L-enantiomer. When varying the incident photon energy of the ultraviolet Raman probe across 5 eV, D- and L-isomers of the RNA duplex with the sequence [r(CUGGGCGG).r(CCGCCUGG)] show differences in the intensity of the vibrational modes with energies of 124.0 meV to 210.8 meV. The intensity difference of these vibrational modes can be traced back to energy differences in the electronic levels of D- and L-RNA leading to the preferential stabilization of the naturally occurring D-configuration of RNA over the L-configuration.

A photochemical mechanism for homochirogenesis

Theoretical analysis of one-step and multiple-step photoreactions initiated with circularly polarized light shows that the enantiomeric excess of a chiral reactant approaches +/- 1 as the amount of unreacted reactant approaches 0. The final product never has a large enantiomeric excess at any stage of its formation and slowly decreases to 0 at the completion of the reaction. For multiple-step reactions the behavior of the intermediate photoproducts is much more interesting. During certain stages of the overall reaction both the size of the enantiomer excess and the amount of a given intermediate photoproduct are large. Furthermore, the sign of the enantiomeric excess of an intermediate may change during the course of the reaction. Multiple-step photoreactions initiated with circularly polarized light may be a method by which the exogenous and endogenous synthesis of optically active molecules occurred in the prebiotic universe.

Violation of Distribution Symmetry in Statistical Evaluation of Absolute Enantioselective Synthesis

Enantiomeric excesses obtained in absolute enantioselective synthesis by chiral autocatalysis (Soai-reaction) were statistically analyzed. Two sets of parallel experiments, which were performed under chemically different conditions, are available. One group contains 37, while the other contains 84 preparative results. The former group shows some interesting tendencies but does not give conclusive statistical results. The sample of 84 parallel experiments, providing 39 R- and 45 S-excesses have shown that these data represent two distinct, non-symmetric sets with different non-Gaussian distributions. Clear S preference was found.

Photodecarbonylation of dibenzyl ketones and trapping of radical intermediates by copper(II) chloride in frozen aqueous solutions

This paper presents a quantitative and qualitative study of the Norrish type I reaction of dibenzyl ketone (DBK) and 4-methyldibenzyl ketone (MeDBK), producing the benzyl radicals and consequently recombination products, in frozen aqueous solutions over a broad temperature range (-80 to 20 degrees C). This work extends previous research on the cage effects in various constrained media to provide information about the dynamics and reactivity of the photochemically generated intermediates at the grain boundaries of ice matrix. As the temperature of aqueous solutions decreases, the solute concentrations become high at layers covering ice crystals, causing efficient molecular segregation. The cage effect experiments have shown that diffusion of the benzyl radicals within such reaction aggregates is still remarkably efficient at temperatures below -50 degrees C, independently of the initial ketone concentration in the range of 10(-6)-10(-4) mol L(-1). In addition, the study of trapping the benzyl radicals formed in situ by CuCl2 was used as a qualitative probe of heterogeneous bimolecular reactions in the frozen aqueous matrix and on its surface. Molecules of both solutes were found to be segregated from the ice phase to the same location and underwent chemical reactions within diffusion and intermediates lifetimes limits. Understanding the fundamental physicochemical processes in ice is unquestionably important in related environmental or cosmochemical investigations.

Conditions for the emergence of life on the early Earth: summary and reflections

This review attempts to situate the emergence of life on the early Earth within the scientific issues of the operational and mechanistic description of life, the conditions and constraints of prebiotic chemistry, together with bottom-up molecular fabrication and biomolecular nanofabrication and top-down miniaturization approaches to the origin of terrestrial life.

Evolution of homochirality by epimerization of random peptide chains. A stochastic model

A cyclic process is described which is constituted of polymerization, epimerization, and hydrolysis steps. During the first cycle peptides with random sequences are formed from racemic amino acids. A small portion of these peptides have substructures with a terminal residue linked to a homochiral sequence of optical antipodes. In such a substructure the terminal residue is assumed to invert into its mirror image so that a thermodynamically favourable epimeric stucture with continuous homochirality is formed. In the hydrolysis step the peptides are split back to monomeric units with retention of configuration. Due to stochastic differences between L- and D-substructures a net excess of one of the enantiomers results. This excess enhances the probability of the formation of substructures having the dominant configuration in the next cycle. It is shown by probabilistic considerations and computer simulations that this mechanism generates an autocatalytic growth of one of the enantiomers which finally results in homochiral populations of amino acids. The number of cycles necessary to attain homochirality depends on the number of residues of the substructure, on the chain length distribution of the polymers and on the total number of amino acid units.

Absolute enantioselective separation: Optical activity ex machina

The paper describes methodology of using three independent macroscopic factors affecting molecular orientation to accomplish separation of a racemic mixture without the presence of any other chiral compounds, i. e., absolute enantioselective separation (AES) which is an extension of a concept of applying these factors to absolute asymmetric synthesis. The three factors may be applied simultaneously or, if their effects can be retained, consecutively. The resulting three mutually orthogonal or near orthogonal directors constitute a true chiral influence and their scalar triple product is the measure of the chirality of the system. AES can be executed in a chromatography-like microfluidic process in the presence of an electric field. It may be carried out on a chemically modified flat surface, a monolithic polymer column made of a mesoporous material, each having imparted directional properties. Separation parameters were estimated for these media and possible implications for the natural homochirality are discussed.