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De Vriendt X, De Vos J, De Baerdemacker S, Bultinck P, Acke G. Capturing correlation in the spin frustrated H 3-ring using the generator coordinate method and spin-constrained generalised Hartree-Fock states. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2134831] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
| | - John De Vos
- Ghent Quantum Chemistry Group, Ghent, Belgium
| | - Stijn De Baerdemacker
- Department of Chemistry, University of New Brunswick, Fredericton, New Brunswick, Canada
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Millane RP, Wojtas DH, Hong Yoon C, Blakeley ND, Bones PJ, Goyal A, Squire JM, Luther PK. Geometric frustration in the myosin superlattice of vertebrate muscle. J R Soc Interface 2021; 18:20210585. [PMID: 34905966 PMCID: PMC8672065 DOI: 10.1098/rsif.2021.0585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Accepted: 11/16/2021] [Indexed: 11/12/2022] Open
Abstract
Geometric frustration results from an incompatibility between minimum energy arrangements and the geometry of a system, and gives rise to interesting and novel phenomena. Here, we report geometric frustration in a native biological macromolecular system---vertebrate muscle. We analyse the disorder in the myosin filament rotations in the myofibrils of vertebrate striated (skeletal and cardiac) muscle, as seen in thin-section electron micrographs, and show that the distribution of rotations corresponds to an archetypical geometrically frustrated system---the triangular Ising antiferromagnet. Spatial correlations are evident out to at least six lattice spacings. The results demonstrate that geometric frustration can drive the development of structure in complex biological systems, and may have implications for the nature of the actin--myosin interactions involved in muscle contraction. Identification of the distribution of myosin filament rotations with an Ising model allows the extensive results on the latter to be applied to this system. It shows how local interactions (between adjacent myosin filaments) can determine long-range order and, conversely, how observations of long-range order (such as patterns seen in electron micrographs) can be used to estimate the energetics of these local interactions. Furthermore, since diffraction by a disordered system is a function of the second-order statistics, the derived correlations allow more accurate diffraction calculations, which can aid in interpretation of X-ray diffraction data from muscle specimens for structural analysis.
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Affiliation(s)
- Rick P. Millane
- Computational Imaging Group, Department of Electrical and Computer Engineering, University of Canterbury, Private Bag 4800, Christchurch, New Zealand
| | - David H. Wojtas
- Computational Imaging Group, Department of Electrical and Computer Engineering, University of Canterbury, Private Bag 4800, Christchurch, New Zealand
| | - Chun Hong Yoon
- Computational Imaging Group, Department of Electrical and Computer Engineering, University of Canterbury, Private Bag 4800, Christchurch, New Zealand
| | - Nicholas D. Blakeley
- Computational Imaging Group, Department of Electrical and Computer Engineering, University of Canterbury, Private Bag 4800, Christchurch, New Zealand
| | - Philip J. Bones
- Computational Imaging Group, Department of Electrical and Computer Engineering, University of Canterbury, Private Bag 4800, Christchurch, New Zealand
| | - Abhishek Goyal
- Computational Imaging Group, Department of Electrical and Computer Engineering, University of Canterbury, Private Bag 4800, Christchurch, New Zealand
| | - John M. Squire
- Muscle Contraction Group, School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol BS8 1TD, UK
| | - Pradeep K. Luther
- National Heart and Lung Institute, Sir Alexander Fleming Building, Imperial College London, London SW7 2AZ, UK
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Yoon C, Millane RP. Diffraction by a frustrated system: the triangular Ising antiferromagnet. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2014; 31:1416-26. [PMID: 25121427 DOI: 10.1364/josaa.31.001416] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Expressions are derived for diffraction by the triangular Ising antiferromagnet, a disordered lattice system consisting of two kinds of scatterer and exhibiting geometric frustration. Analysis of the expressions shows characteristics of the diffraction patterns, including the presence of Bragg and diffuse diffraction, superlattice reflections, and their behavior with temperature. These characteristics are illustrated by numerical simulations. The results have application to diffraction imaging of disordered systems.
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Lin SZ, Kamiya Y, Chern GW, Batista CD. Stiffness from disorder in triangular-lattice Ising thin films. PHYSICAL REVIEW LETTERS 2014; 112:155702. [PMID: 24785055 DOI: 10.1103/physrevlett.112.155702] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2013] [Indexed: 06/03/2023]
Abstract
We study the triangular lattice Ising model with a finite number of vertically stacked layers and demonstrate a low temperature reentrance of two Berezinskii-Kosterlitz-Thouless transitions, which results in an extended disordered regime down to T=0. Numerical results are complemented with the derivation of an effective low-temperature dimer theory. Contrary to order by disorder, we present a new scenario for fluctuation-induced ordering in frustrated spin systems. While short-range spin-spin correlations are enhanced by fluctuations, quasi-long-range ordering is precluded at low enough temperatures by proliferation of topological defects.
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Affiliation(s)
- Shi-Zeng Lin
- Theoretical Division, T-4 and CNLS, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - Yoshitomo Kamiya
- Theoretical Division, T-4 and CNLS, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA and iTHES Research Group and Condensed Matter Theory Laboratory, RIKEN, Wako, Saitama 351-0198, Japan
| | - Gia-Wei Chern
- Theoretical Division, T-4 and CNLS, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - Cristian D Batista
- Theoretical Division, T-4 and CNLS, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
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Elamparuthi E, Fellay C, Neuburger M, Gademann K. Total synthesis of cyrneine A. Angew Chem Int Ed Engl 2012; 51:4071-3. [PMID: 22431475 DOI: 10.1002/anie.201200515] [Citation(s) in RCA: 68] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2012] [Revised: 02/13/2012] [Indexed: 11/08/2022]
Affiliation(s)
- Elangovan Elamparuthi
- Department of Chemistry, University of Basel, National Centre of Competence in Research Chemical Biology, St. Johanns-Ring 19, 4056 Basel, Switzerland
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Jana CK, Hoecker J, Woods TM, Jessen HJ, Neuburger M, Gademann K. Synthese von Withanolid A, Untersuchung der neuritogenen Eigenschaften und Studien zur Sekretase-Inhibierung. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201101869] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Jana CK, Hoecker J, Woods TM, Jessen HJ, Neuburger M, Gademann K. Synthesis of withanolide A, biological evaluation of its neuritogenic properties, and studies on secretase inhibition. Angew Chem Int Ed Engl 2011; 50:8407-11. [PMID: 21766402 DOI: 10.1002/anie.201101869] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2011] [Revised: 05/01/2011] [Indexed: 02/07/2023]
Affiliation(s)
- Chandan Kumar Jana
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
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Jessen HJ, Schumacher A, Shaw T, Pfaltz A, Gademann K. A Unified Approach for the Stereoselective Total Synthesis of Pyridone Alkaloids and Their Neuritogenic Activity. Angew Chem Int Ed Engl 2011; 50:4222-6. [DOI: 10.1002/anie.201007671] [Citation(s) in RCA: 72] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2010] [Indexed: 01/24/2023]
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Jessen HJ, Schumacher A, Shaw T, Pfaltz A, Gademann K. Ein einheitlicher Ansatz zur stereoselektiven Totalsynthese von Pyridonalkaloiden und deren neuritogene Aktivität. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201007671] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Peng X, Zhang J, Du J, Suter D. Quantum simulation of a system with competing two- and three-body interactions. PHYSICAL REVIEW LETTERS 2009; 103:140501. [PMID: 19905554 DOI: 10.1103/physrevlett.103.140501] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2008] [Indexed: 05/28/2023]
Abstract
Quantum phase transitions occur at zero temperature, when the ground state of a Hamiltonian undergoes a qualitative change as a function of a control parameter. We consider a particularly interesting system with competing one-, two-, and three-body interactions. Depending on the relative strength of these interactions, the ground state of the system can be a product state, or it can exhibit genuine tripartite entanglement. We experimentally simulate such a system in a NMR quantum simulator and observe the different ground states. By adiabatically changing the strength of one coupling constant, we push the system from one ground state to a qualitatively different ground state. We show that these ground states can be distinguished and the transitions between them observed by measuring correlations between the spins or the expectation values of suitable entanglement witnesses.
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Affiliation(s)
- Xinhua Peng
- Hefei National Laboratory for Physical Sciences at Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China.
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