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Pereira RJ, Ruiz‐Ruano FJ, Thomas CJ, Pérez‐Ruiz M, Jiménez‐Bartolomé M, Liu S, Torre J, Bella JL. Mind the
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: Finding informative mitochondrial markers in a giant grasshopper genome. J ZOOL SYST EVOL RES 2020. [DOI: 10.1111/jzs.12446] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Ricardo J. Pereira
- Division of Evolutionary Biology Faculty of Biology II Ludwig‐ Maximilians‐Universität München Planegg‐Martinsried Germany
| | - Francisco J. Ruiz‐Ruano
- Department of Genetics University of Granada Granada Spain
- Department of Ecology and Genetics – Evolutionary Biology Evolutionary Biology Centre (EBC) Uppsala University Uppsala Sweden
- Department of Organismal Biology – Systematic Biology Evolutionary Biology Centre (EBC) Uppsala University Uppsala Sweden
| | - Callum J.E. Thomas
- Division of Evolutionary Biology Faculty of Biology II Ludwig‐ Maximilians‐Universität München Planegg‐Martinsried Germany
| | - Mar Pérez‐Ruiz
- Departamento de Biología (Genética) Facultad de Ciencias Universidad Autónoma de Madrid Madrid Spain
| | - Miguel Jiménez‐Bartolomé
- Departamento de Biología (Genética) Facultad de Ciencias Universidad Autónoma de Madrid Madrid Spain
| | - Shanlin Liu
- Department of Entomology College of Plant Protection China Agricultural University Beijing China
| | - Joaquina Torre
- Departamento de Biología (Genética) Facultad de Ciencias Universidad Autónoma de Madrid Madrid Spain
- Centro de Investigación en Biodiversidad y Cambio Global (CIBC‐UAM) Universidad Autónoma de Madrid Madrid Spain
| | - José L. Bella
- Departamento de Biología (Genética) Facultad de Ciencias Universidad Autónoma de Madrid Madrid Spain
- Centro de Investigación en Biodiversidad y Cambio Global (CIBC‐UAM) Universidad Autónoma de Madrid Madrid Spain
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Shapiro LH. HYBRIDIZATION AND GEOGRAPHIC VARIATION IN TWO MEADOW KATYDID CONTACT ZONES. Evolution 2017; 52:784-796. [DOI: 10.1111/j.1558-5646.1998.tb03702.x] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/1997] [Accepted: 01/28/1998] [Indexed: 11/27/2022]
Affiliation(s)
- Leo H. Shapiro
- Department of Ecology and Evolution; State University of New York at Stony Brook; Stony Brook New York 11794-5245
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Gillet F, Cabria Garrido MT, Blanc F, Fournier-Chambrillon C, Némoz M, Sourp E, Vial-Novella C, Zardoya R, Aulagnier S, Michaux JR. Evidence of fine-scale genetic structure for the endangered Pyrenean desman (Galemys pyrenaicus) in the French Pyrenees. J Mammal 2017. [DOI: 10.1093/jmammal/gyx002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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4
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Lis A, Maryańska-Nadachowska A, Lachowska-Cierlik D, Kajtoch L. The secondary contact zone of phylogenetic lineages of the Philaenus spumarius (Hemiptera: Aphrophoridae): an example of incomplete allopatric speciation. JOURNAL OF INSECT SCIENCE (ONLINE) 2014; 14:227. [PMID: 25500280 PMCID: PMC5633978 DOI: 10.1093/jisesa/ieu089] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2013] [Accepted: 01/18/2014] [Indexed: 05/22/2023]
Abstract
Previous studies on the phylogeography of the meadow spittlebug Philaenus spumarius (L.) (Hemiptera: Aphrophoridae) suggest the existence of a contact zone of its main phylogenetic lineages along mountain chains in Europe and western Asia. This study presents a detailed examination of the population genetics of P. spumarius within the Carpathian Mountains. The main objective was to determine whether the populations inhabiting that area consist of individuals belonging to different genetic units and whether the observed pattern could be an example of secondary contact zone which formed after incomplete allopatric speciation. Specimens from six transects across the Carpathian arc were examined. The mitochondrial phylogeography of the meadow spittlebug in the examined area clearly shows that individuals from both main clades meet and mix there. Representatives of all three main EF1-α clades were also found. The present distribution of the main clades with a zone of overlap along the mountain ranges may suggest that these phylogenetic lineages form a young hybrid zone. Moreover, a limited number of individuals were shown to possess heteroplasmic mitochondrial DNA, which gives additional support to intraspecific hybridization. P. spumarius could be used in future work as an excellent model species in investigating population genetics, intraspecific hybridization, and speciation in progress.
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Affiliation(s)
- Agata Lis
- Institute of Systematics and Evolution of Animals, Polish Academy of Sciences, Cracow, Poland
| | | | | | - Lukasz Kajtoch
- Institute of Systematics and Evolution of Animals, Polish Academy of Sciences, Cracow, Poland
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Milá B, Surget-Groba Y, Heulin B, Gosá A, Fitze PS. Multilocus phylogeography of the common lizard Zootoca vivipara at the Ibero-Pyrenean suture zone reveals lowland barriers and high-elevation introgression. BMC Evol Biol 2013; 13:192. [PMID: 24021154 PMCID: PMC3847509 DOI: 10.1186/1471-2148-13-192] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2013] [Accepted: 09/06/2013] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The geographic distribution of evolutionary lineages and the patterns of gene flow upon secondary contact provide insight into the process of divergence and speciation. We explore the evolutionary history of the common lizard Zootoca vivipara (= Lacerta vivipara) in the Iberian Peninsula and test the role of the Pyrenees and the Cantabrian Mountains in restricting gene flow and driving lineage isolation and divergence. We also assess patterns of introgression among lineages upon secondary contact, and test for the role of high-elevation trans-mountain colonisations in explaining spatial patterns of genetic diversity. We use mtDNA sequence data and genome-wide AFLP loci to reconstruct phylogenetic relationships among lineages, and measure genetic structure. RESULTS The main genetic split in mtDNA corresponds generally to the French and Spanish sides of the Pyrenees as previously reported, in contrast to genome-wide AFLP data, which show a major division between NW Spain and the rest. Both types of markers support the existence of four distinct and geographically congruent genetic groups, which are consistent with major topographic barriers. Both datasets reveal the presence of three independent contact zones between lineages in the Pyrenean region, one in the Basque lowlands, one in the low-elevation mountains of the western Pyrenees, and one in the French side of the central Pyrenees. The latter shows genetic evidence of a recent, high-altitude trans-Pyrenean incursion from Spain into France. CONCLUSIONS The distribution and age of major lineages is consistent with a Pleistocene origin and a role for both the Pyrenees and the Cantabrian Mountains in driving isolation and differentiation of Z. vivipara lineages at large geographic scales. However, mountain ranges are not always effective barriers to dispersal, and have not prevented a recent high-elevation trans-Pyrenean incursion that has led to asymmetrical introgression among divergent lineages. Cytonuclear discordance in patterns of genetic structure and introgression at contact zones suggests selection may be involved at various scales. Suture zones are important areas for the study of lineage formation and speciation, and our results show that biogeographic barriers can yield markedly different phylogeographic patterns in different vertebrate and invertebrate taxa.
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Affiliation(s)
- Borja Milá
- National Museum of Natural Sciences, Spanish Research Council (CSIC), José Gutiérrez Abascal 2, Madrid 28006, Spain
| | - Yann Surget-Groba
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan 666303, P. R China
| | - Benoît Heulin
- Station Biologique, CNRS UMR 6553, Paimpont 35380, France
| | - Alberto Gosá
- Herpetology Department, Sociedad de Ciencias Aranzadi, San Sebastián 20014, Spain
| | - Patrick S Fitze
- National Museum of Natural Sciences, Spanish Research Council (CSIC), José Gutiérrez Abascal 2, Madrid 28006, Spain
- ARAID Foundation, Zaragoza 50004, Spain
- Instituto Pirenaico de Ecología (IPE-CSIC), Jaca 22700, Spain
- Université de Lausanne, Department of Ecology and Evolution (DEE), Biophore, Lausanne 1015, Switzerland
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Singhal S, Moritz C. Strong selection against hybrids maintains a narrow contact zone between morphologically cryptic lineages in a rainforest lizard. Evolution 2012; 66:1474-89. [PMID: 22519785 DOI: 10.1111/j.1558-5646.2011.01539.x] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Phenotypically cryptic lineages comprise an important yet understudied part of biodiversity; in particular, we have much to learn about how these lineages are formed and maintained. To better understand the evolutionary significance of such lineages, we studied a hybrid zone between two morphologically cryptic phylogeographic lineages in the rainforest lizard, Lampropholis coggeri. Analyzing a multilocus genetic dataset through cline inference, individual-based methods and population measures of disequilibrium and using simulations to explore our genetic results in context of theoretical expectations, we inferred the processes maintaining this hybrid zone. We find that these lineages meet in a hybrid zone that is narrow (≈400 m) relative to inferred dispersal rate. Further, the hybrid zone exhibits substantial genetic disequilibrium and sharply coincident and largely concordant clines. Based on our knowledge about the region's biogeography, the species' natural history, and our simulation results, we suggest that strong selection against hybrids structures this system. As all clines show a relatively narrow range of introgression, we posit that this hybrid zone might not yet be in equilibrium. Nonetheless, our results clearly show that phylogeographic lineages can evolve substantial reproductive isolation without concomitant morphological diversification, suggesting that such lineages can constitute a significant component of evolutionary diversity.
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Affiliation(s)
- Sonal Singhal
- Museum of Vertebrate Zoology, University of California, Berkeley, California 94720-3160, USA.
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Hochkirch A, Lemke I. Asymmetric mate choice, hybridization, and hybrid fitness in two sympatric grasshopper species. Behav Ecol Sociobiol 2011. [DOI: 10.1007/s00265-011-1174-6] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Bella JL, Serrano L, Orellana J, Mason PL. The origin of the Chorthippus parallelus hybrid zone: chromosomal evidence of multiple refugia for Iberian populations. J Evol Biol 2007; 20:568-76. [PMID: 17305823 DOI: 10.1111/j.1420-9101.2006.01254.x] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A study of the variation in pattern and frequency of constitutive heterochromatin and nucleolar organizing regions of the X chromosomes of male Chorthippus parallelus grasshoppers in 25 populations within the Iberian peninsula requires us to revise our interpretation of the biogeography and evolutionary history of this species. Hybridization between the subspecies Cp erythropus and Cp parallelus, previously only known from populations in the Pyrenean cols, is shown to extend at least 400 km further into north-west Spain. A novel X-chromosome variant is described that appears to be close to fixation in 18 populations, mainly from the centre and south of Spain. Our findings indicate a possible independent origin for each of three distinct, nonderivative X variants present in Spain: the northern Cp erythropus and Cp parallelus variants, and a central-southern Cp erythropus variant. The first two are distinguished by interstitial and distal C bands, respectively, whereas the central-southern form has neither. This central-southern form is probably the current representative of the ancestral Iberian X variant. The pattern of variation supports the hypotheses of multiple refugia for Iberian populations and that more hybrid zones exist between these chromosomal variants.
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Affiliation(s)
- J L Bella
- Departamento de Biología, Facultad de Ciencias, Universidad Autónoma de Madrid, Madrid, Spain.
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Spooner LJ, Ritchie MG. An unusual phylogeography in the bushcricket Ephippiger ephippiger from Southern France. Heredity (Edinb) 2006; 97:398-408. [PMID: 16955113 DOI: 10.1038/sj.hdy.6800884] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
Pleistocene glaciations have played a major role in species divergence. The bushcricket Ephippiger ephippiger shows unusual patterns of intraspecific variation in multiple traits across Southern Europe. This is centred in Southern France, and evidence implies that it results from secondary contact after differentiation in Pleistocene refugia. However, the possible time scales involved, locations of the refugia and patterns of expansion remain obscure. This study sequenced the COII (507 BP) and cyt b (428 BP) mitochondrial genes to examine the intraspecific phylogeography of Western European samples of E. ephippiger. A minimum evolution tree revealed little resolution between described subspecies of E. ephippiger. Strikingly, populations from the Pyrenees and Mediterranean coastal region contained a complex genetic structure corresponding to major river valleys, independent of the traditional taxonomy. Samples of the subspecies E. e. vitium formed a distinct clade, perhaps supporting their taxonomic status. However, other forms (cruciger and cunii) were not genetically distinct, which is surprising given differences in their morphology and behaviour. The extent of the genetic divergence between Pyreneen valleys is unexpectedly deep, with average Tamura-Nei distances of around 14% (net distances of 11%) separating the main clades of coding COII sequences. Cyt b showed a similar pattern, but was confounded by some non-coding probable pseudogenes. If a conventional insect molecular clock is applied, these cryptic clades must pre-date the Pleistocene, and hypotheses for their history are discussed. However, mtDNA divergence in Ephippiger is not evolving in a clock-like manner, because a likelihood ratio test rejects clock assumptions for the COII sequences.
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Affiliation(s)
- L J Spooner
- School of Biology, Environmental and Evolutionary Biology, Dyers Brae House, University of St Andrews, St Andrews, Fife KY16 9TH, UK
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Buño I, Lopez-Fernandez C, Mason PL, Gosalvez J. Mosaicism for Sister Chromatid Heterogeneity in Sex Chromosomes from Hybrids of two Subspecies of Chorthippus Parallelus (Orthoptera: Acrididae). Hereditas 2004. [DOI: 10.1111/j.1601-5223.1995.00289.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
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Narain Y, Fredga K. A Hybrid Zone Between the Hällefors and Uppsala Chromosome Races of Sorex Araneus in Central Sweden. Hereditas 2004. [DOI: 10.1111/j.1601-5223.1996.00137.x] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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Liepelt S, Bialozyt R, Ziegenhagen B. Wind-dispersed pollen mediates postglacial gene flow among refugia. Proc Natl Acad Sci U S A 2002; 99:14590-4. [PMID: 12391327 PMCID: PMC137927 DOI: 10.1073/pnas.212285399] [Citation(s) in RCA: 150] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A long-term genetic legacy of refugial isolation has been postulated and was demonstrated for maternal refugial lineages for numerous plant and animal species. The lineages were assumed to have remained separated from each other for several glacial periods. The conifer Abies alba Miller, silver fir, is an excellent model to test whether pollen-mediated gene flow may eliminate the genetic imprints of Pleistocene refugial isolation. Two DNA markers with contrasting modes of inheritance were applied to 100 populations covering the entire range of silver fir in Europe. The markers exhibited each two highly conserved alleles based on an insertion/deletion of 80 bp in the fourth intron of the mitochondrial nad5 gene and on a synonymous substitution in the chloroplast psbC gene. The geographical distribution of the maternally inherited mitochondrial variation supported the existence of at least two refugia with two recolonizing maternal lineages remaining largely separated throughout the range. The cline of the nad5 allele frequencies was much steeper than the one of the two psbC alleles. The psbC cline was as wide as the whole range of the species. Our results provide striking evidence that even a species with very long generation times and heavy pollen grains was able to establish a highly efficient pollen-mediated gene flow between refugia. Therefore we postulate that an exchange of genetic information between refugia by range-wide paternal introgression is possible in wind-pollinated plant species.
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Affiliation(s)
- Sascha Liepelt
- Federal Research Centre for Forestry and Forest Products, Institute for Forest Genetics and Forest Tree Breeding, Sieker Landstrasse 2, 22927 Grosshansdorf, Germany
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Clemente M, Garma C, De Sola BG, Henriques-Gil N. Steep variation in mitochondrial DNA and B chromosomes among natural populations of Eyprepocnemis plorans (Acrididae). Hereditas 2002; 134:135-40. [PMID: 11732849 DOI: 10.1111/j.1601-5223.2001.00135.x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Abstract
Restriction enzyme analysis of the mitochondrial DNA of Eyprepocnemis plorans with 9 restriction enzymes revealed low variability--only EcoRI revealed any variability with 3 distinguishable digestion patterns, here named types I, II and III. The samples studied were collected from regions where different types of B chromosome exist. The demes from the central area show the B1 type (as a relict of a probably once continuous distribution) and also mtDNA type II. These show a parallel substitution towards the SW neighbouring demes by other Bs and mtDNA type I. However, the latter mtDNA type had a wider distribution and is predominant, or even the only one found in most other samples where other Bs exist. Considering the mtDNA as a marker unlinked with the Bs, some genetic differences should exist among areas defined by the B chromosomes. Our results support the hypothesis that in the central region the B chromosomes and the mtDNA are involved in two different events of substitution, but these do not necessarily occur in the same way.
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Affiliation(s)
- M Clemente
- Unidad de Genética, Universidad San Pablo CEU, Montepríncipe, Boadilla del Monte, Madrid, Spain.
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Gorlov IP, Tsurusaki N. Staggered clines in a hybrid zone between two chromosome races of the harvestman Gagrellopsis nodulifera (Arachnida: Opiliones). Evolution 2000; 54:176-90. [PMID: 10937194 DOI: 10.1111/j.0014-3820.2000.tb00018.x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
We analyzed a hybrid zone between two chromosome races (2n = 16 and 2n = 22) of a Japanese harvestman, Gagrellopsis nodulifera Sato and Suzuki (Arachnida: Opiliones: Phalangiidae). The hybrid zone is located in the eastern part of Tottori Prefecture, western Honshu. The width of the zone is approximately 5 to 15 km. Three independent tandem fusions/fissions seem to be the main cause of the karyotypic differences between the parental races. Ten karyotypic variants were found in the hybrid zone. They differed by numbers of diploid chromosomes and trivalents detected in meiosis. In most of the collecting sites, karyotypic heterozygotes were less common than expected. A positive correlation was found between number of trivalents in a karyotype and its deficiency rate. In some sites, the deficit of heterozygous individuals was accompanied by an excess of the intermediate homozygotes. One of the three transects across the zone was studied in detail. We found that three types of single heterozygotes (2n = 17, 2n = 19 and 2n = 21) formed a series of successive, spatially separated peaks along the transect. Two types of intermediate homozygotes (2n = 18 and 2n = 20) were also spatially separated. The most parsimonious explanation of such a structure is the staggering of clines of three tandem (or Robertsonian) fusion/fission variants that differentiate the parental races caused by selection against multiple heterozygotes. Analysis of nondisjunction in single heterozygotes demonstrated that there was a strong interindividual variation in nondisjunction rate. The mean frequency of aneuploid MII in single heterozygotes was 0.10 +/- 0.03. Crossover exchanges in some critical regions of trivalents result in abnormal chromosomal configurations: chromosomes with unequal chromatids and dicentric chromosomes. Frequency of crossover-induced chromosomal abnormalities was low in single heterozygotes (approximately equal to 4%), and was unexpectedly high in the double heterozygotes (approximately equal to 15%). Selection against karyotypic heterozygotes is considered as a main evolutionary force responsible for the structuring of the hybrid zone. A positive association between diploid chromosome number and altitude was found. The race 2n = 16 tended to occupy lower altitudes than the 2n = 22 parental race. Differences in ecological preferences may be a result of previous adaptations to different environments in allopatry. A hypothesis concerning the origin and evolution of the hybrid zone is proposed.
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Affiliation(s)
- I P Gorlov
- Department of Biology, Faculty of Education and Regional Sciences, Tottori University, Japan
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Gorlov IP, Tsurusaki N. STAGGERED CLINES IN A HYBRID ZONE BETWEEN TWO CHROMOSOME RACES OF THE HARVESTMAN GAGRELLOPSIS NODULIFERA (ARACHNIDA: OPILIONES). Evolution 2000. [DOI: 10.1554/0014-3820(2000)054[0176:sciahz]2.0.co;2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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