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Clark JD, Benham PM, Maldonado JE, Luther DA, Lim HC. Maintenance of local adaptation despite gene flow in a coastal songbird. Evolution 2022; 76:1481-1494. [PMID: 35700208 PMCID: PMC9545442 DOI: 10.1111/evo.14538] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 03/09/2022] [Accepted: 03/19/2022] [Indexed: 01/22/2023]
Abstract
Adaptation to local environments is common in widespread species and the basis of ecological speciation. The song sparrow (Melospiza melodia) is a widespread, polytypic passerine that occurs in shrubland habitats throughout North America. We examined the population structure of two parapatric subspecies that inhabit different environments: the Atlantic song sparrow (M. m. atlantica), a coastal specialist, and the eastern song sparrow (M. m. melodia), a shrubland generalist. These populations lacked clear mitochondrial population structure, yet coastal birds formed a distinct nuclear genetic cluster. We found weak overall genomic differentiation between these subspecies, suggesting either recent divergence, extensive gene flow, or a combination thereof. There was a steep genetic cline at the transition to coastal habitats, consistent with isolation by environment, not isolation by distance. A phenotype under divergent selection, bill size, varied with the amount of coastal ancestry in transitional areas, but larger bill size was maintained in coastal habitats regardless of ancestry, further supporting a role for selection in the maintenance of these subspecies. Demographic modeling suggested a divergence history of limited gene flow followed by secondary contact, which has emerged as a common theme in adaptive divergence across taxa.
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Affiliation(s)
- Jonathan D. Clark
- Department of Environmental Science and PolicyGeorge Mason UniversityFairfaxVirginia22030,Current Address: Department of Natural Resources and the EnvironmentUniversity of New HampshireDurhamNew Hampshire03824
| | - Phred M. Benham
- Museum of Vertebrate ZoologyUniversity of California, BerkeleyBerkeleyCalifornia94720
| | - Jesus E. Maldonado
- Department of Environmental Science and PolicyGeorge Mason UniversityFairfaxVirginia22030,Center for Conservation GenomicsSmithsonian Conservation Biology InstituteWashingtonD.C.20013
| | - David A. Luther
- Department of BiologyGeorge Mason UniversityFairfaxVirginia22030
| | - Haw Chuan Lim
- Center for Conservation GenomicsSmithsonian Conservation Biology InstituteWashingtonD.C.20013,Department of BiologyGeorge Mason UniversityFairfaxVirginia22030
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Yamada T, Saitoh T. Serial sampling bridges a gap between ecological and genetical definitions of immigrant: an empirical test in a grey-sided vole population. MAMMAL RES 2018. [DOI: 10.1007/s13364-018-0351-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Ely CR, Wilson RE, Talbot SL. Genetic structure among greater white-fronted goose populations of the Pacific Flyway. Ecol Evol 2017; 7:2956-2968. [PMID: 28479995 PMCID: PMC5415542 DOI: 10.1002/ece3.2934] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2016] [Revised: 02/23/2017] [Accepted: 03/03/2017] [Indexed: 01/13/2023] Open
Abstract
An understanding of the genetic structure of populations in the wild is essential for long-term conservation and stewardship in the face of environmental change. Knowledge of the present-day distribution of genetic lineages (phylogeography) of a species is especially important for organisms that are exploited or utilize habitats that may be jeopardized by human intervention, including climate change. Here, we describe mitochondrial (mtDNA) and nuclear genetic (microsatellite) diversity among three populations of a migratory bird, the greater white-fronted goose (Anser albifrons), which breeds discontinuously in western and southwestern Alaska and winters in the Pacific Flyway of North America. Significant genetic structure was evident at both marker types. All three populations were differentiated for mtDNA, whereas microsatellite analysis only differentiated geese from the Cook Inlet Basin. In sexual reproducing species, nonrandom mate selection, when occurring in concert with fine-scale resource partitioning, can lead to phenotypic and genetic divergence as we observed in our study. If mate selection does not occur at the time of reproduction, which is not uncommon in long-lived organisms, then mechanisms influencing the true availability of potential mates may be obscured, and the degree of genetic and phenotypic diversity may appear incongruous with presumed patterns of gene flow. Previous investigations revealed population-specific behavioral, temporal, and spatial mechanisms that likely influence the amount of gene flow measured among greater white-fronted goose populations. The degree of observed genetic structuring aligns well with our current understanding of population differences pertaining to seasonal movements, social structure, pairing behavior, and resource partitioning.
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Affiliation(s)
- Craig R. Ely
- U.S. Geological SurveyAlaska Science CenterAnchorageAKUSA
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Wood DA, Bui TVD, Overton CT, Vandergast AG, Casazza ML, Hull JM, Takekawa JY. A century of landscape disturbance and urbanization of the San Francisco Bay region affects the present-day genetic diversity of the California Ridgway’s rail (Rallus obsoletus obsoletus). CONSERV GENET 2016. [DOI: 10.1007/s10592-016-0888-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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Richmond JQ, Wood DA, Swaim KE, Fisher RN, Vandergast AG. Historical Habitat Barriers Prevent Ring-like Genetic Continuity Throughout the Distribution of Threatened Alameda Striped Racers (Coluber lateralis euryxanthus). HERPETOLOGICA 2016. [DOI: 10.1655/herpetologica-d-15-00046.1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- Jonathan Q. Richmond
- US Geological Survey, Western Ecological Research Center, 4165 Spruance Road, Suite 200, San Diego, CA 92106, USA
| | - Dustin A. Wood
- US Geological Survey, Western Ecological Research Center, 4165 Spruance Road, Suite 200, San Diego, CA 92106, USA
| | - Karen E. Swaim
- Swaim Biological Incorporated, 4435 First Street PMB 312, Livermore, CA 94551, USA
| | - Robert N. Fisher
- US Geological Survey, Western Ecological Research Center, 4165 Spruance Road, Suite 200, San Diego, CA 92106, USA
| | - Amy G. Vandergast
- US Geological Survey, Western Ecological Research Center, 4165 Spruance Road, Suite 200, San Diego, CA 92106, USA
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Bairlein F, Norris DR, Voigt CC, Dunn EH, Hussell DJT. Using stable-hydrogen isotopes to reveal immigration in an Arctic-breeding songbird population. MOVEMENT ECOLOGY 2016; 4:16. [PMID: 27307991 PMCID: PMC4908781 DOI: 10.1186/s40462-016-0081-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/18/2016] [Accepted: 04/13/2016] [Indexed: 06/06/2023]
Abstract
BACKGROUND Knowledge of immigration and emigration rates is crucial for understanding of population dynamics, yet little is known about these vital rates, especially for arctic songbirds. We estimated immigration in an Arctic population of northern wheatears on Baffin Island, Canada, by the use of stable hydrogen isotopes in tail feathers (δ(2)HK). We assumed that δ(2)HK values of juvenile (hatch-year) feathers grown at the breeding grounds were representative of the local population, while those of breeding adults were indicative of where they grew their feathers during their post-breeding molt the previous year. The extent to which adult isotope values differ from those of juveniles provides an estimate of the minimum level of immigration into the breeding population. RESULTS Mean δ(2)HK values did not differ in juvenile birds between years. Breeding adult birds did not differ significantly in mean δ(2)HK values compared to juveniles but did differ in their respective standard deviations, reflecting a significantly wider range of isotopic signatures in adults than in juveniles. Thirty-eight percent of the δ(2)HK values in adults were greater ± 2 SD of the mean δ(2)HK values of juveniles, suggesting that at least 38 % of the breeding adults were of non-local origin, thus immigrants from elsewhere. CONCLUSIONS Although the use of stable isotopes has limitations, the use of stable-hydrogen isotopic markers has the potential to contribute valuable information towards understanding immigration rates in bird populations. In our study, hydrogen isotope measurements of the feathers of northern wheatears indicated a high rate of immigration into the breeding population, which is consistent with low return rates of banded breeding adults as well as implying high emigration rates of local breeders.
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Affiliation(s)
- Franz Bairlein
- />Institute of Avian Research “Vogelwarte Helgoland”, An der Vogelwarte 21, 26386 Wilhelmshaven, Germany
| | - D. Ryan Norris
- />Department of Integrative Biology, University of Guelph, Guelph, N1G 2W1 ON Canada
| | - Christian C. Voigt
- />Leibniz Institute for Zoo and Wildlife Research, Alfred-Kowalke-Str. 17, 10315 Berlin, Germany
| | - Erica H. Dunn
- />Environment Climate Change Canada, National Wildlife Research Centre, Carleton University, 1125 Colonel By Drive, Ottawa, K1A 0H3 ON Canada
| | - David J. T. Hussell
- />Ontario Ministry of Natural Resources, 2140 East Bank Drive, Peterborough, K9J 7BS ON Canada
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Greenberg R, Cammen KM, Wilson AG, Olsen BJ, Ballentine B, McInerney NC, Fleischer RC. Geographic population structure and subspecific boundaries in a tidal marsh sparrow. CONSERV GENET 2016. [DOI: 10.1007/s10592-016-0809-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Smyth JF, Patten MA, Pruett CL. The evolutionary ecology of a species ring: a test of alternative models. FOLIA ZOOLOGICA 2015. [DOI: 10.25225/fozo.v64.i3.a5.2015] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Jason F. Smyth
- Florida Institute of Technology, Department of Biological Sciences, Melbourne, FL 32901, U.S.A.
| | - Michael A. Patten
- University of Oklahoma, Oklahoma Biological Survey and Department of Biology, Norman, OK 73019, U.S.A.
| | - Christin L. Pruett
- Florida Institute of Technology, Department of Biological Sciences, Melbourne, FL 32901, U.S.A.
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Morgans CL, Cooke GM, Ord TJ. How populations differentiate despite gene flow: sexual and natural selection drive phenotypic divergence within a land fish, the Pacific leaping blenny. BMC Evol Biol 2014; 14:97. [PMID: 24884492 PMCID: PMC4055934 DOI: 10.1186/1471-2148-14-97] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2013] [Accepted: 03/13/2014] [Indexed: 11/10/2022] Open
Abstract
Background Divergence between populations in reproductively important features is often vital for speciation. Many studies attempt to identify the cause of population differentiation in phenotype through the study of a specific selection pressure. Holistic studies that consider the interaction of several contrasting forms of selection are more rare. Most studies also fail to consider the history of connectivity among populations and the potential for genetic drift or gene flow to facilitate or limit phenotypic divergence. We examined the interacting effects of natural selection, sexual selection and the history of connectivity on phenotypic differentiation among five populations of the Pacific leaping blenny (Alticus arnoldorum), a land fish endemic to the island of Guam. Results We found key differences among populations in two male ornaments—the size of a prominent head crest and conspicuousness of a coloured dorsal fin—that reflected a trade-off between the intensity of sexual selection (male biased sex ratios) and natural selection (exposure to predators). This differentiation in ornamentation has occurred despite evidence suggesting extensive gene flow among populations, which implies that the change in ornament expression has been recent (and potentially plastic). Conclusions Our study provides an early snapshot of divergence in reproductively important features that, regardless of whether it reflects genetic or plastic changes in phenotype, could ultimately form a reproductive barrier among populations.
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Affiliation(s)
- Courtney L Morgans
- Evolution and Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Kensington, NSW, Australia.
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Pruett CL, Tanksley SM, Small MF, Taylor JF, Forstner MRJ. The Effects of Range Expansion on the Population Genetics of White-Winged Doves in Texas. AMERICAN MIDLAND NATURALIST 2011. [DOI: 10.1674/0003-0031-166.2.415] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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MacDougall-Shackleton EA, Clinchy M, Zanette L, Neff BD. Songbird genetic diversity is lower in anthropogenically versus naturally fragmented landscapes. CONSERV GENET 2011. [DOI: 10.1007/s10592-011-0222-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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The Song Sparrow,Melospiza melodia,as a ring species: Patterns of geographic variation, a revision of subspecies, and implications for speciation. SYST BIODIVERS 2009. [DOI: 10.1017/s1477200008002867] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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