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Bhattarai B, Bhattacharjee AS, Coutinho FH, Goel RK. Viruses and Their Interactions With Bacteria and Archaea of Hypersaline Great Salt Lake. Front Microbiol 2021; 12:701414. [PMID: 34650523 PMCID: PMC8506154 DOI: 10.3389/fmicb.2021.701414] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Accepted: 09/06/2021] [Indexed: 01/15/2023] Open
Abstract
Viruses play vital biogeochemical and ecological roles by (a) expressing auxiliary metabolic genes during infection, (b) enhancing the lateral transfer of host genes, and (c) inducing host mortality. Even in harsh and extreme environments, viruses are major players in carbon and nutrient recycling from organic matter. However, there is much that we do not yet understand about viruses and the processes mediated by them in the extreme environments such as hypersaline habitats. The Great Salt Lake (GSL) in Utah, United States is a hypersaline ecosystem where the biogeochemical role of viruses is poorly understood. This study elucidates the diversity of viruses and describes virus–host interactions in GSL sediments along a salinity gradient. The GSL sediment virosphere consisted of Haloviruses (32.07 ± 19.33%) and members of families Siphoviridae (39.12 ± 19.8%), Myoviridae (13.7 ± 6.6%), and Podoviridae (5.43 ± 0.64%). Our results demonstrate that salinity alongside the concentration of organic carbon and inorganic nutrients (nitrogen and phosphorus) governs the viral, bacteria, and archaeal diversity in this habitat. Computational host predictions for the GSL viruses revealed a wide host range with a dominance of viruses that infect Proteobacteria, Actinobacteria, and Firmicutes. Identification of auxiliary metabolic genes for photosynthesis (psbA), carbon fixation (rbcL, cbbL), formaldehyde assimilation (SHMT), and nitric oxide reduction (NorQ) shed light on the roles played by GSL viruses in biogeochemical cycles of global relevance.
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Affiliation(s)
- Bishav Bhattarai
- Department of Civil and Environmental Engineering, The University of Utah, Salt Lake City, UT, United States
| | - Ananda S Bhattacharjee
- Carl R. Woese Institute for Genomic Biology, The University of Illinois at Urbana-Champaign, Urbana, IL, United States
| | - Felipe H Coutinho
- Departamento de Producción Vegetal y Microbiología, Universidad Miguel Hernández, Alicante, Spain
| | - Ramesh K Goel
- Department of Civil and Environmental Engineering, The University of Utah, Salt Lake City, UT, United States
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Mizrahi GA, Shemesh E, Mizrachi A, Tchernov D. Comparative genetics of scyphozoan species reveals the geological history and contemporary processes of the Mediterranean Sea. Ecol Evol 2021; 11:10303-10319. [PMID: 34367576 PMCID: PMC8328420 DOI: 10.1002/ece3.7834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Revised: 06/05/2021] [Accepted: 06/07/2021] [Indexed: 11/08/2022] Open
Abstract
Jellyfish are useful genetic indicators for aquatic ecosystems as they have limited mobility and are highly exposed to the water column. By using comparative genomics and the molecular clock (timetree) of Rhizostoma pulmo, we revealed a divergence point between the East and West Mediterranean Sea (MS) populations that occurred 4.59 million years ago (mya). It is suggested that the two distinct ecological environments we know today were formed at this time. We propose that before this divergence, the highly mixed Atlantic and Mediterranean waters led to the wide dispersal of different species including R. pulmo. At 4.59 mya, the Western and Eastern MS were formed, indicating the possibility of a dramatic environmental event. For the first time, we find that for the jellyfish we examined, the division of the MS in east and west is not at the Straits of Sicily as generally thought, but significantly to the east. Using genomics of the Aurelia species, we examined contemporary anthropogenic impacts with a focus on migration of scyphozoa across the Suez Canal (Lessepsian migration). Aurelia sp. is among the few scyphozoa we find in both the MS and the Red Sea, but our DNA analysis revealed that the Red Sea Aurelia sp. did not migrate or mix with MS species. Phyllorhiza punctata results showed that this species was only recently introduced to the MS as a result of anthropogenic transportation activity, such as ballast water discharge, and revealed a migration vector from Australia to the MS. Our findings demonstrate that jellyfish genomes can be used as a phylogeographic molecular tool to trace past events across large temporal scales and reveal invasive species introduction due to human activity.
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Affiliation(s)
- Gur A. Mizrahi
- Department of Marine BiologyThe Leon H. Charney School of Marine SciencesUniversity of HaifaHaifaIsrael
- Morris Kahn Marine Research StationEnvironmental Geochemistry Lab.Leon H. Charney School of Marine SciencesHaifa UniversityHaifaIsrael
| | - Eli Shemesh
- Department of Marine BiologyThe Leon H. Charney School of Marine SciencesUniversity of HaifaHaifaIsrael
- Morris Kahn Marine Research StationEnvironmental Geochemistry Lab.Leon H. Charney School of Marine SciencesHaifa UniversityHaifaIsrael
| | - Avia Mizrachi
- Plant and Environmental Sciences DepartmentWeizmann Institute of ScienceRehovotIsrael
| | - Dan Tchernov
- Department of Marine BiologyThe Leon H. Charney School of Marine SciencesUniversity of HaifaHaifaIsrael
- Morris Kahn Marine Research StationEnvironmental Geochemistry Lab.Leon H. Charney School of Marine SciencesHaifa UniversityHaifaIsrael
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Sternai P. Surface processes forcing on extensional rock melting. Sci Rep 2020; 10:7711. [PMID: 32382159 PMCID: PMC7206043 DOI: 10.1038/s41598-020-63920-w] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Accepted: 03/30/2020] [Indexed: 11/09/2022] Open
Abstract
Surface processes and magmatism condition the structural evolution of continental rifts and passive margins through mechanical and thermal effects on the lithosphere rheology. However, their inter-relationships in extensional settings are largely unknown. Here, I use coupled thermo-mechanical geodynamic and landscape evolution numerical modeling to assess the links between erosion of rift shoulders, sedimentation within the rift basin and extensional rock melting. Results suggest that, when the crust is thinner than ~40 km, the extension rate is slower than ~2 cm/yr and the mantle potential temperature is below ~1230 °C, efficient surface processes may double crustal melting by Moho lowering and inhibit mantle decompression melting by ~50% through sediment loading within the rift basin. It is thus likely that surface processes significantly influenced the magmatic activity of a number of extensional settings worldwide - e.g. the Mediterranean, the Gulf of California, the Iberia-Newfoundland margin, and the South China Sea. Because magmatism and surface processes affect jointly the geological carbon cycle, the surface processes forcing on extensional rock melting investigated here involves an additional means of linkage between plate tectonics and climate changes.
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Affiliation(s)
- Pietro Sternai
- Department of Earth and Environmental Sciences, University of Milano-Bicocca, Milan, Italy.
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Efficient recycling of nutrients in modern and past hypersaline environments. Sci Rep 2019; 9:3718. [PMID: 30842491 PMCID: PMC6403304 DOI: 10.1038/s41598-019-40174-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Accepted: 02/11/2019] [Indexed: 11/09/2022] Open
Abstract
The biogeochemistry of hypersaline environments is strongly influenced by changes in biological processes and physicochemical parameters. Although massive evaporation events have occurred repeatedly throughout Earth history, their biogeochemical cycles and global impact remain poorly understood. Here, we provide the first nitrogen isotopic data for nutrients and chloropigments from modern shallow hypersaline environments (solar salterns, Trapani, Italy) and apply the obtained insights to δ15N signatures of the Messinian salinity crisis (MSC) in the late Miocene. Concentrations and δ15N of chlorophyll a, bacteriochlorophyll a, nitrate, and ammonium in benthic microbial mats indicate that inhibition of nitrification suppresses denitrification and anammox, resulting in efficient ammonium recycling within the mats and high primary productivity. We also suggest that the release of 15N-depleted NH3(gas) with increasing salinity enriches ammonium 15N in surface brine (≈34.0‰). Such elevated δ15N is also recorded in geoporphyrins isolated from sediments of the MSC peak (≈20‰), reflecting ammonium supply sufficient for sustaining phototrophic primary production. We propose that efficient nutrient supply combined with frequent bottom-water anoxia and capping of organic-rich sediments by evaporites of the Mediterranean MSC could have contributed to atmospheric CO2 reduction during the late Miocene.
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Booth-Rea G, R Ranero C, Grevemeyer I. The Alboran volcanic-arc modulated the Messinian faunal exchange and salinity crisis. Sci Rep 2018; 8:13015. [PMID: 30158535 PMCID: PMC6115444 DOI: 10.1038/s41598-018-31307-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2018] [Accepted: 08/16/2018] [Indexed: 12/02/2022] Open
Abstract
What process triggered the Mediterranean Sea restriction remains debated since the discovery of the Messinian Salinity Crisis (MSC). Recent hypotheses infer that the MSC initiated after the closure of the Atlantic-Mediterranean Betic and Rifean corridors, being modulated through restriction at the Gibraltar Strait. These hypotheses however, do not integrate contemporaneous speciation patterns of the faunal exchange between Iberia and Africa and several geological features like the evaporite distribution. Exchange of terrestrial biota occurred before, during and after the MSC, and speciation models support an exchange path across the East Alborán basin (EAB) located a few hundreds of km east of the Gibraltar Strait. Yet, a structure explaining jointly geological and biological observations has remained undiscovered. We present new seismic data showing the velocity structure of a well-differentiated 14–17-km thick volcanic arc in the EAB. Isostatic considerations support that the arc-crust buoyancy created an archipelago leading to a filter bridge across the EAB. Sub-aerial erosional unconformities and onlap relationships support that the arc was active between ~10–6 Ma. Progressive arc build-up leading to an archipelago and its later subsidence can explain the extended exchange of terrestrial biota between Iberia and Africa (~7–3 Ma), and agrees with patterns of biota speciation and terrestrial fossil distribution before the MSC (10–6.2 Ma). In this scenario, the West Alboran Basin (WAB) could then be the long-postulated open-marine refuge for the Mediterranean taxa that repopulated the Mediterranean after the MSC, connected to the deep restricted Mediterranean basin through a sill at the Alboran volcanic arc archipelago.
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Affiliation(s)
- Guillermo Booth-Rea
- Instituto Andaluz de Ciencias de la Tierra (UGR-CSIC), Granada, Spain. .,Department of Geodynamics, University of Granada, Granada, Spain.
| | - César R Ranero
- Barcelona Center for Subsurface Imaging, Instituto de Ciencias del Mar, CSIC, Pg. Marítim de la Barceloneta 37-49, 08003, Barcelona, Spain.,ICREA, Pg. Lluís Companys 23, 08010, Barcelona, Spain
| | - Ingo Grevemeyer
- GEOMAR, Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
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Brothelande E, Amelung F, Yunjun Z, Wdowinski S. Geodetic evidence for interconnectivity between Aira and Kirishima magmatic systems, Japan. Sci Rep 2018; 8:9811. [PMID: 29955079 PMCID: PMC6023929 DOI: 10.1038/s41598-018-28026-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2018] [Accepted: 06/11/2018] [Indexed: 11/09/2022] Open
Abstract
It is not known whether clustered or aligned volcanic edifices at the Earth surface have connected magmatic systems at depth. Previously suggested by geological records of paired eruptions, volcano interconnectivity still lacks proper geodetic evidence. Here we use GPS time-series and deformation modeling to show how Aira caldera and Kirishima, two adjacent volcanic centers in Kagoshima graben (southern Japan), interacted during Kirishima unrest in 2011. Whereas Aira caldera had been inflating steadily for two decades, it deflated during the eruption of Kirishima which started with a large-volume lava extrusion. This deflation, which cannot be explained by stress changes, is interpreted as the result of magma withdrawal from the Aira system during the Kirishima replenishment phase. This study highlights the behavior of connected neighboring volcanic systems before and after a large eruption, and the importance of taking into account volcano interactions in eruption probability models.
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Affiliation(s)
- E Brothelande
- Department of Marine Geosciences, Rosenstiel School of Marine and Atmospheric Science, University of Miami, 4600 Rickenbacker Causeway, Miami, FL, 33149, USA.
| | - F Amelung
- Department of Marine Geosciences, Rosenstiel School of Marine and Atmospheric Science, University of Miami, 4600 Rickenbacker Causeway, Miami, FL, 33149, USA
| | - Z Yunjun
- Department of Marine Geosciences, Rosenstiel School of Marine and Atmospheric Science, University of Miami, 4600 Rickenbacker Causeway, Miami, FL, 33149, USA
| | - S Wdowinski
- Department of Earth and Environment, Florida International University, Miami, Florida, USA
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Global time-size distribution of volcanic eruptions on Earth. Sci Rep 2018; 8:6838. [PMID: 29717232 PMCID: PMC5931572 DOI: 10.1038/s41598-018-25286-y] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Accepted: 04/16/2018] [Indexed: 12/02/2022] Open
Abstract
Volcanic eruptions differ enormously in their size and impacts, ranging from quiet lava flow effusions along the volcano flanks to colossal events with the potential to affect our entire civilization. Knowledge of the time and size distribution of volcanic eruptions is of obvious relevance for understanding the dynamics and behavior of the Earth system, as well as for defining global volcanic risk. From the analysis of recent global databases of volcanic eruptions extending back to more than 2 million years, I show here that the return times of eruptions with similar magnitude follow an exponential distribution. The associated relative frequency of eruptions with different magnitude displays a power law, scale-invariant distribution over at least six orders of magnitude. These results suggest that similar mechanisms subtend to explosive eruptions from small to colossal, raising concerns on the theoretical possibility to predict the magnitude and impact of impending volcanic eruptions.
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