Intracellular RNA sorting, transport and localization

A genetic in vivo system to detect asymmetrically distributed RNA

Many RNAs show polarized or otherwise non-random subcellular distributions. To create a method for genome-wide genetic screens for RNAs with asymmetric subcellular distributions, we have combined methods for gene tagging and live imaging of messenger RNA (mRNA). A pilot screen in a highly polarized, differentiated cell in the Drosophila larva, the branched terminal cell of the tracheal system, demonstrates the feasibility of the method for identifying new asymmetrically localized mRNAs in vivo.

Expression of beta-1 integrin in human developing salivary glands and its parallel relation with maturation markers: In situ hybridisation and immunofluorescence study

BACKGROUND AND OBJECTIVE

Salivary gland development entails co-ordinated processes involving complex molecular interactions in which integrins have a fundamental role. The integrins are a family of heterodimeric transmembrane receptors comprising alpha and beta subunits that mediate intercellular and extracellular signals involved in the organisation of cells in tissues and organs during development. The beta-1 integrin in particular have been implicated in proliferation and differentiation of cells involved in the development of epithelial tissues. To understand the role of beta-1 integrin in salivary gland development we have studied its expression in human foetal tissues.

DESIGN

In situ hybridisation was used to compare the expression and localisation of integrin beta-1 with differentiation markers in developing human salivary glands obtained from foetuses of 8-24 weeks gestation.

RESULTS

Integrin beta-1 first appeared during bud stage in a few cells and its distribution increased as salivary gland morphogenesis progressed. This increased pattern of beta-1 integrin expression was coincident with the appearance of the differentiation markers CK14, CK low MW and smooth-muscle actin.

CONCLUSIONS

The developmentally regulated expression of integrin beta-1 in association with the establishment of a mature phenotype indicated by salivary gland tissue differentiation markers is suggestive of its role in salivary gland morphogenesis.

mRNA trafficking in fungi

Fungal growth depends on active transport of macromolecules along the actin and/or microtubule cytoskeleton. Thereby, molecular cargo such as proteins, lipids, and mRNAs is targeted to defined subcellular regions. Active transport and localisation of mRNAs mediate localised translation so that protein synthesis occurs where protein function is required. In Saccharomyces cerevisiae, actomyosin-dependent mRNA trafficking participates in polar growth, asymmetric cell division, targeting of membrane proteins and import of mitochondrial proteins. The best-understood example is transport of ASH1 mRNA to the distal pole of the incipient daughter cell. cis-acting RNA sequences are recognised by the RNA-binding protein She2p that is connected via the adaptor She3p to the molecular motor Myo4p. Local translation at the poles of daughter cells causes Ash1p to accumulate predominantly in nuclei of daughter cells, where this transcription factor inhibits mating-type switching. Recently, it was also shown that actomyosin-dependent ASH1 mRNA transport directs tip cell-specific gene expression in filaments of the human pathogen Candida albicans. Furthermore, in the plant pathogen Ustilago maydis microtubule-dependent shuttling of the RNA-binding protein Rrm4 is essential to determine the axis of polarity in infectious filaments. Thus, mRNA trafficking appears to be universally required for polar growth of fungi.

Imaging mRNA movement from transcription sites to translation sites

RNA localization is one mechanism to temporally and spatially restrict protein synthesis to specific subcellular compartments in response to extracellular stimuli. To understand the mechanisms of mRNA localization, a number of methods have been developed to follow the path of these molecules in living cells including direct labeling of target mRNAs, the MS2-GFP system, and molecular beacons. We review advances in these methods with the goal of identifying the particular strengths and weaknesses of the various approaches in their ability to follow the movements of mRNAs from transcription sites to translation sites.

The RNA-binding protein Rrm4 is essential for polarity in Ustilago maydis and shuttles along microtubules

Formation of polar-growing hyphae is essential for infection by the plant pathogen Ustilago maydis. Here we observe that loss of RNA-recognition motif protein Rrm4 caused formation of abnormal hyphae. The insertion of septa at the distal pole was abolished and a significantly increased number of hyphae grew bipolarly. UV-crosslinking experiments revealed that Rrm4 bound RNA via its N-terminal RRMs and that its RNA-binding activity was substantially increased during filamentation. Rrm4 assembled into particles that shuttled bidirectionally along microtubules to both poles. Recruitment of Rrm4 into particles increased during filamentation, and mutations in the peptide-binding pocket of its PABC domain caused abnormal particle formation as well as polarity defects. Shuttling was mediated by active transport because loss of conventional kinesin, which interferes with the balance of microtubule-dependent motors, caused accumulation of particles at the poles resulting in disturbed polarity. Thus, constant transport of the RNA-binding protein towards the poles is needed to orchestrate hyphal growth. Since a mutation of the N-terminal RRM that leads to reduced RNA binding in vivo also affected polarity, Rrm4 might regulate polarity of the infectious hyphae by transporting RNA from the nucleus to cell poles.