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For: Gazitúa MC, Vik DR, Roux S, Gregory AC, Bolduc B, Widner B, Mulholland MR, Hallam SJ, Ulloa O, Sullivan MB. Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters. ISME J 2021;15:981-998. [PMID: 33199808 PMCID: PMC8115048 DOI: 10.1038/s41396-020-00825-6] [Citation(s) in RCA: 67] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Revised: 09/30/2020] [Accepted: 10/27/2020] [Indexed: 01/29/2023]
Number Cited by Other Article(s)
1
Zhou Z, Liu S, Saleem M, Liu F, Hu R, Su H, Dong D, Luo Z, Wu Y, Zhang Y, He Z, Wang C. Unraveling phase-dependent variations of viral community, virus-host linkage, and functional potential during manure composting process. BIORESOURCE TECHNOLOGY 2025;419:132081. [PMID: 39826761 DOI: 10.1016/j.biortech.2025.132081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2024] [Revised: 01/13/2025] [Accepted: 01/14/2025] [Indexed: 01/22/2025]
2
Xia R, Yin X, Balcazar JL, Huang D, Liao J, Wang D, Alvarez PJJ, Yu P. Bacterium-Phage Symbiosis Facilitates the Enrichment of Bacterial Pathogens and Antibiotic-Resistant Bacteria in the Plastisphere. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025;59:2948-2960. [PMID: 39836086 DOI: 10.1021/acs.est.4c08265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2025]
3
Xu T, Ni Y, Li H, Wu S, Yan S, Chen L, Yu Y, Wang Y. Discovery and characterization of complete genomes of 38 head-tailed proviruses in four predominant phyla of archaea. Microbiol Spectr 2025;13:e0049224. [PMID: 39545734 PMCID: PMC11705971 DOI: 10.1128/spectrum.00492-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Accepted: 09/23/2024] [Indexed: 11/17/2024]  Open
4
Zang B, Zhou H, Zhao Y, Sano D, Chen R. Investigating potential auxiliary anaerobic digestion activity of phage under polyvinyl chloride microplastic stress. JOURNAL OF HAZARDOUS MATERIALS 2024;480:135950. [PMID: 39326145 DOI: 10.1016/j.jhazmat.2024.135950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 08/18/2024] [Accepted: 09/23/2024] [Indexed: 09/28/2024]
5
Yuan L, Yu P, Huang X, Zhao Z, Chen L, Ju F. Seasonal succession, host associations, and biochemical roles of aquatic viruses in a eutrophic lake plagued by cyanobacterial blooms. ENVIRONMENT INTERNATIONAL 2024;193:109125. [PMID: 39547087 DOI: 10.1016/j.envint.2024.109125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Revised: 10/31/2024] [Accepted: 11/04/2024] [Indexed: 11/17/2024]
6
Ruff SE, Schwab L, Vidal E, Hemingway JD, Kraft B, Murali R. Widespread occurrence of dissolved oxygen anomalies, aerobic microbes, and oxygen-producing metabolic pathways in apparently anoxic environments. FEMS Microbiol Ecol 2024;100:fiae132. [PMID: 39327011 PMCID: PMC11549561 DOI: 10.1093/femsec/fiae132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2024] [Revised: 07/23/2024] [Accepted: 09/25/2024] [Indexed: 09/28/2024]  Open
7
Qi H, Lv J, Liao J, Jin J, Ren Y, Tao Y, Wang D, Alvarez PJJ, Yu P. Metagenomic insights into microalgae-bacterium-virus interactions and viral functions in phycosphere facing environmental fluctuations. WATER RESEARCH 2024;268:122676. [PMID: 39471530 DOI: 10.1016/j.watres.2024.122676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2024] [Revised: 10/18/2024] [Accepted: 10/19/2024] [Indexed: 11/01/2024]
8
Martin C, Gitter A, Anantharaman K. Protein Set Transformer: A protein-based genome language model to power high diversity viromics. RESEARCH SQUARE 2024:rs.3.rs-4844047. [PMID: 39399683 PMCID: PMC11469463 DOI: 10.21203/rs.3.rs-4844047/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/15/2024]
9
Jiang Y, Zhou C, Khan A, Zhang X, Mamtimin T, Fan J, Hou X, Liu P, Han H, Li X. Environmental risks of mask wastes binding pollutants: Phytotoxicity, microbial community, nitrogen and carbon cycles. JOURNAL OF HAZARDOUS MATERIALS 2024;476:135058. [PMID: 38986403 DOI: 10.1016/j.jhazmat.2024.135058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 06/11/2024] [Accepted: 06/26/2024] [Indexed: 07/12/2024]
10
Wang C, Zheng R, Zhang T, Sun C. Polysaccharides induce deep-sea Lentisphaerae strains to release chronic bacteriophages. eLife 2024;13:RP92345. [PMID: 39207920 PMCID: PMC11361711 DOI: 10.7554/elife.92345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]  Open
11
Wu Z, Liu T, Chen Q, Chen T, Hu J, Sun L, Wang B, Li W, Ni J. Unveiling the unknown viral world in groundwater. Nat Commun 2024;15:6788. [PMID: 39117653 PMCID: PMC11310336 DOI: 10.1038/s41467-024-51230-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Accepted: 08/01/2024] [Indexed: 08/10/2024]  Open
12
Wu Z, Guo L, Wu Y, Yang M, Du S, Shao J, Zhang Z, Zhao Y. Novel phage infecting the Roseobacter CHUG lineage reveals a diverse and globally distributed phage family. mSphere 2024;9:e0045824. [PMID: 38926906 PMCID: PMC11288001 DOI: 10.1128/msphere.00458-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Accepted: 06/01/2024] [Indexed: 06/28/2024]  Open
13
Martin C, Gitter A, Anantharaman K. Protein Set Transformer: A protein-based genome language model to power high diversity viromics. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.07.26.605391. [PMID: 39131363 PMCID: PMC11312453 DOI: 10.1101/2024.07.26.605391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 08/13/2024]
14
Zhu Y, Yan S, Chen X, Li Y, Xie S. Thallium spill shifts the structural and functional characteristics of viral communities with different lifestyles in river sediments. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;947:174531. [PMID: 38971241 DOI: 10.1016/j.scitotenv.2024.174531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2024] [Revised: 06/10/2024] [Accepted: 07/03/2024] [Indexed: 07/08/2024]
15
Zhu Y, Li R, Yan S, Chen X, Cen S, Xie S. Habitat- and lifestyle-dependent structural and functional characteristics of viruses in mangrove wetlands of different functional zonings. ENVIRONMENTAL RESEARCH 2024;252:119070. [PMID: 38710431 DOI: 10.1016/j.envres.2024.119070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 04/24/2024] [Accepted: 04/30/2024] [Indexed: 05/08/2024]
16
Ji M, Li Y, Zhou J, Song W, Zhou Y, Ma K, Wang M, Liu X, Li Y, Gong X, Tu Q. Temporal turnover of viral biodiversity and functional potential in intertidal wetlands. NPJ Biofilms Microbiomes 2024;10:48. [PMID: 38898104 PMCID: PMC11186824 DOI: 10.1038/s41522-024-00522-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2023] [Accepted: 06/07/2024] [Indexed: 06/21/2024]  Open
17
Zhu S, Tan Z, Guo Z, Zheng H, Zhang B, Qin Z, Xie J, Lin Y, Sheng B, Qiu G, Preis S, Wei C. Symbiotic virus-bacteria interactions in biological treatment of coking wastewater manipulating bacterial physiological activities. WATER RESEARCH 2024;257:121741. [PMID: 38744061 DOI: 10.1016/j.watres.2024.121741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 04/11/2024] [Accepted: 05/04/2024] [Indexed: 05/16/2024]
18
Wang Y, Gao Y, Wang X, Lin Y, Xu G, Yang F, Ni K. Insights into the phage community structure and potential function in silage fermentation. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024;358:120837. [PMID: 38593737 DOI: 10.1016/j.jenvman.2024.120837] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Revised: 04/01/2024] [Accepted: 04/01/2024] [Indexed: 04/11/2024]
19
Elbon CE, Stewart FJ, Glass JB. Novel Alphaproteobacteria transcribe genes for nitric oxide transformation at high levels in a marine oxygen-deficient zone. Appl Environ Microbiol 2024;90:e0209923. [PMID: 38445905 PMCID: PMC11022542 DOI: 10.1128/aem.02099-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 02/09/2024] [Indexed: 03/07/2024]  Open
20
Liang JL, Feng SW, Lu JL, Wang XN, Li FL, Guo YQ, Liu SY, Zhuang YY, Zhong SJ, Zheng J, Wen P, Yi X, Jia P, Liao B, Shu WS, Li JT. Hidden diversity and potential ecological function of phosphorus acquisition genes in widespread terrestrial bacteriophages. Nat Commun 2024;15:2827. [PMID: 38565528 PMCID: PMC10987575 DOI: 10.1038/s41467-024-47214-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Accepted: 03/22/2024] [Indexed: 04/04/2024]  Open
21
Zhong ZP, Du J, Köstlbacher S, Pjevac P, Orlić S, Sullivan MB. Viral potential to modulate microbial methane metabolism varies by habitat. Nat Commun 2024;15:1857. [PMID: 38424049 PMCID: PMC10904782 DOI: 10.1038/s41467-024-46109-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 02/06/2024] [Indexed: 03/02/2024]  Open
22
Fadum JM, Borton MA, Daly RA, Wrighton KC, Hall EK. Dominant nitrogen metabolisms of a warm, seasonally anoxic freshwater ecosystem revealed using genome resolved metatranscriptomics. mSystems 2024;9:e0105923. [PMID: 38259093 PMCID: PMC10878078 DOI: 10.1128/msystems.01059-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Accepted: 12/13/2023] [Indexed: 01/24/2024]  Open
23
Li Y, Yu H, Xiong L, Wei Y, Li H, Ji X. Viral AMGs-driven pentose phosphate pathway in natural wetland. J Basic Microbiol 2024;64:e2300569. [PMID: 38078780 DOI: 10.1002/jobm.202300569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 11/24/2023] [Accepted: 11/24/2023] [Indexed: 02/13/2024]
24
Ghaly TM, Focardi A, Elbourne LDH, Sutcliffe B, Humphreys WF, Jaschke PR, Tetu SG, Paulsen IT. Exploring virus-host-environment interactions in a chemotrophic-based underground estuary. ENVIRONMENTAL MICROBIOME 2024;19:9. [PMID: 38291480 PMCID: PMC10829341 DOI: 10.1186/s40793-024-00549-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Accepted: 01/08/2024] [Indexed: 02/01/2024]
25
Zheng R, Wang C, Liu R, Cai R, Sun C. Physiological and metabolic insights into the first cultured anaerobic representative of deep-sea Planctomycetes bacteria. eLife 2024;12:RP89874. [PMID: 38265071 PMCID: PMC10945688 DOI: 10.7554/elife.89874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2024]  Open
26
Xiong L, Li Y, Zeng K, Wei Y, Li H, Ji X. Revealing viral diversity in the Napahai plateau wetland based on metagenomics. Antonie Van Leeuwenhoek 2023;117:3. [PMID: 38153618 DOI: 10.1007/s10482-023-01912-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Accepted: 11/22/2023] [Indexed: 12/29/2023]
27
Rosani U, Corinaldesi C, Luongo G, Sollitto M, Dal Monego S, Licastro D, Bongiorni L, Venier P, Pallavicini A, Dell’Anno A. Viral Diversity in Benthic Abyssal Ecosystems: Ecological and Methodological Considerations. Viruses 2023;15:2282. [PMID: 38140524 PMCID: PMC10747316 DOI: 10.3390/v15122282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 11/13/2023] [Accepted: 11/18/2023] [Indexed: 12/24/2023]  Open
28
Wang L, Li A. Ammonia monooxygenase-mediated transformation of 17α-ethinylestradiol: Underlying molecular mechanism. ENVIRONMENTAL RESEARCH 2023;237:116930. [PMID: 37604224 DOI: 10.1016/j.envres.2023.116930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 08/08/2023] [Accepted: 08/18/2023] [Indexed: 08/23/2023]
29
Li Y, Xiong L, Yu H, Zeng K, Wei Y, Li H, Zeng W, Ji X. Function and distribution of nitrogen-cycling microbial communities in the Napahai plateau wetland. Arch Microbiol 2023;205:357. [PMID: 37872393 DOI: 10.1007/s00203-023-03695-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Revised: 09/27/2023] [Accepted: 09/29/2023] [Indexed: 10/25/2023]
30
Almeida C, Gonçalves-Nobre JG, Alpuim Costa D, Barata P. The potential links between human gut microbiota and cardiovascular health and disease - is there a gut-cardiovascular axis? FRONTIERS IN GASTROENTEROLOGY 2023;2. [DOI: 10.3389/fgstr.2023.1235126] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]
31
Palomo A, Dechesne A, Smets BF, Zheng Y. Narrow host range phages infect essential bacteria for water purification reactions in groundwater-fed rapid sand filters. WATER RESEARCH 2023;245:120655. [PMID: 37748347 DOI: 10.1016/j.watres.2023.120655] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 09/18/2023] [Accepted: 09/19/2023] [Indexed: 09/27/2023]
32
Chen T, Deng C, Wu Z, Liu T, Zhang Y, Xu X, Zhao X, Li J, Li S, Xu N, Yu K. Metagenomic analysis unveils the underexplored roles of prokaryotic viruses in a full-scale landfill leachate treatment plant. WATER RESEARCH 2023;245:120611. [PMID: 37722141 DOI: 10.1016/j.watres.2023.120611] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 09/06/2023] [Accepted: 09/09/2023] [Indexed: 09/20/2023]
33
Li Y, Xiong L, Zeng K, Wei Y, Li H, Ji X. Microbial-driven carbon fixation in natural wetland. J Basic Microbiol 2023;63:1115-1127. [PMID: 37440152 DOI: 10.1002/jobm.202300273] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 06/15/2023] [Accepted: 07/01/2023] [Indexed: 07/14/2023]
34
Yan M, Pratama AA, Somasundaram S, Li Z, Jiang Y, Sullivan MB, Yu Z. Interrogating the viral dark matter of the rumen ecosystem with a global virome database. Nat Commun 2023;14:5254. [PMID: 37644066 PMCID: PMC10465536 DOI: 10.1038/s41467-023-41075-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Accepted: 08/21/2023] [Indexed: 08/31/2023]  Open
35
Vik D, Bolduc B, Roux S, Sun CL, Pratama AA, Krupovic M, Sullivan MB. MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets. ISME COMMUNICATIONS 2023;3:87. [PMID: 37620369 PMCID: PMC10449787 DOI: 10.1038/s43705-023-00295-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 08/04/2023] [Accepted: 08/09/2023] [Indexed: 08/26/2023]
36
Rigonato J, Budinich M, Murillo AA, Brandão MC, Pierella Karlusich JJ, Soviadan YD, Gregory AC, Endo H, Kokoszka F, Vik D, Henry N, Frémont P, Labadie K, Zayed AA, Dimier C, Picheral M, Searson S, Poulain J, Kandels S, Pesant S, Karsenti E, Bork P, Bowler C, de Vargas C, Eveillard D, Gehlen M, Iudicone D, Lombard F, Ogata H, Stemmann L, Sullivan MB, Sunagawa S, Wincker P, Chaffron S, Jaillon O. Ocean-wide comparisons of mesopelagic planktonic community structures. ISME COMMUNICATIONS 2023;3:83. [PMID: 37596349 PMCID: PMC10439195 DOI: 10.1038/s43705-023-00279-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Revised: 06/21/2023] [Accepted: 06/29/2023] [Indexed: 08/20/2023]
37
Fan L, Peng W, Duan H, Lü F, Zhang H, He P. Presence and role of viruses in anaerobic digestion of food waste under environmental variability. MICROBIOME 2023;11:170. [PMID: 37537690 PMCID: PMC10401857 DOI: 10.1186/s40168-023-01585-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Accepted: 05/28/2023] [Indexed: 08/05/2023]
38
Zhu Y, Zhang Y, Yan S, Chen X, Xie S. Viral community structure and functional potential vary with lifestyle and altitude in soils of Mt. Everest. ENVIRONMENT INTERNATIONAL 2023;178:108055. [PMID: 37356309 DOI: 10.1016/j.envint.2023.108055] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Revised: 06/13/2023] [Accepted: 06/17/2023] [Indexed: 06/27/2023]
39
Cheng Z, Li X, Palomo A, Yang Q, Han L, Wu Z, Li Z, Zhang M, Chen L, Zhao B, Yu K, Zhang C, Hou S, Zheng Y, Xia Y. Virus impacted community adaptation in oligotrophic groundwater environment revealed by Hi-C coupled metagenomic and viromic study. JOURNAL OF HAZARDOUS MATERIALS 2023;458:131944. [PMID: 37390685 DOI: 10.1016/j.jhazmat.2023.131944] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Revised: 06/21/2023] [Accepted: 06/24/2023] [Indexed: 07/02/2023]
40
Liao H, Liu C, Ai C, Gao T, Yang QE, Yu Z, Gao S, Zhou S, Friman VP. Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting. THE ISME JOURNAL 2023;17:916-930. [PMID: 37031344 PMCID: PMC10202948 DOI: 10.1038/s41396-023-01404-1] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Revised: 03/20/2023] [Accepted: 03/22/2023] [Indexed: 04/10/2023]
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Xia R, Sun M, Balcázar JL, Yu P, Hu F, Alvarez PJJ. Benzo[a]pyrene stress impacts adaptive strategies and ecological functions of earthworm intestinal viromes. THE ISME JOURNAL 2023:10.1038/s41396-023-01408-x. [PMID: 37069233 DOI: 10.1038/s41396-023-01408-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 03/24/2023] [Accepted: 03/30/2023] [Indexed: 04/19/2023]
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Yuan L, Ju F. Potential Auxiliary Metabolic Capabilities and Activities Reveal Biochemical Impacts of Viruses in Municipal Wastewater Treatment Plants. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023;57:5485-5498. [PMID: 36947091 DOI: 10.1021/acs.est.2c07800] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
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Microbial and Viral Genome and Proteome Nitrogen Demand Varies across Multiple Spatial Scales within a Marine Oxygen Minimum Zone. mSystems 2023;8:e0109522. [PMID: 36920198 PMCID: PMC10134851 DOI: 10.1128/msystems.01095-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/16/2023]  Open
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Niu L, Zhao S, Chen Y, Li Y, Zou G, Tao Y, Zhang W, Wang L, Zhang H. Diversity and potential functional characteristics of phage communities colonizing microplastic biofilms. ENVIRONMENTAL RESEARCH 2023;219:115103. [PMID: 36549484 DOI: 10.1016/j.envres.2022.115103] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 11/29/2022] [Accepted: 12/17/2022] [Indexed: 06/17/2023]
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Puxty RJ, Millard AD. Functional ecology of bacteriophages in the environment. Curr Opin Microbiol 2023;71:102245. [PMID: 36512900 DOI: 10.1016/j.mib.2022.102245] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Revised: 11/12/2022] [Accepted: 11/17/2022] [Indexed: 12/14/2022]
46
Jaffe AL, Bardot C, Le Jeune AH, Liu J, Colombet J, Perrière F, Billard H, Castelle CJ, Lehours AC, Banfield JF. Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin. MICROBIOME 2023;11:14. [PMID: 36694212 PMCID: PMC9875498 DOI: 10.1186/s40168-022-01416-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 11/07/2022] [Indexed: 06/16/2023]
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Roux S, Fischer MG, Hackl T, Katz LA, Schulz F, Yutin N. Updated Virophage Taxonomy and Distinction from Polinton-like Viruses. Biomolecules 2023;13:204. [PMID: 36830574 PMCID: PMC9952930 DOI: 10.3390/biom13020204] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 01/02/2023] [Accepted: 01/04/2023] [Indexed: 01/20/2023]  Open
48
Fuchsman CA, Garcia Prieto D, Hays MD, Cram JA. Associations between picocyanobacterial ecotypes and cyanophage host genes across ocean basins and depth. PeerJ 2023;11:e14924. [PMID: 36874978 PMCID: PMC9983427 DOI: 10.7717/peerj.14924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 01/30/2023] [Indexed: 03/06/2023]  Open
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Identification of Novel Viruses and Their Microbial Hosts from Soils with Long-Term Nitrogen Fertilization and Cover Cropping Management. mSystems 2022;7:e0057122. [PMID: 36445691 PMCID: PMC9765229 DOI: 10.1128/msystems.00571-22] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]  Open
50
Brown TL, Charity OJ, Adriaenssens EM. Ecological and functional roles of bacteriophages in contrasting environments: marine, terrestrial and human gut. Curr Opin Microbiol 2022;70:102229. [PMID: 36347213 DOI: 10.1016/j.mib.2022.102229] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 09/22/2022] [Accepted: 10/06/2022] [Indexed: 11/08/2022]
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