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Cartwright-Taylor A, Mangriotis MD, Main IG, Butler IB, Fusseis F, Ling M, Andò E, Curtis A, Bell AF, Crippen A, Rizzo RE, Marti S, Leung DDV, Magdysyuk OV. Seismic events miss important kinematically governed grain scale mechanisms during shear failure of porous rock. Nat Commun 2022; 13:6169. [PMID: 36257960 PMCID: PMC9579157 DOI: 10.1038/s41467-022-33855-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Accepted: 10/04/2022] [Indexed: 11/09/2022] Open
Abstract
Catastrophic failure in brittle, porous materials initiates when smaller-scale fractures localise along an emergent fault zone in a transition from stable crack growth to dynamic rupture. Due to the rapid nature of this critical transition, the precise micro-mechanisms involved are poorly understood and difficult to image directly. Here, we observe these micro-mechanisms directly by controlling the microcracking rate to slow down the transition in a unique rock deformation experiment that combines acoustic monitoring (sound) with contemporaneous in-situ x-ray imaging (vision) of the microstructure. We find seismic amplitude is not always correlated with local imaged strain; large local strain often occurs with small acoustic emissions, and vice versa. Local strain is predominantly aseismic, explained in part by grain/crack rotation along an emergent shear zone, and the shear fracture energy calculated from local dilation and shear strain on the fault is half of that inferred from the bulk deformation.
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Affiliation(s)
| | | | - Ian G Main
- School of GeoSciences, University of Edinburgh, Edinburgh, UK
| | - Ian B Butler
- School of GeoSciences, University of Edinburgh, Edinburgh, UK
| | - Florian Fusseis
- School of GeoSciences, University of Edinburgh, Edinburgh, UK
| | - Martin Ling
- Independent Electronics Developer, Edinburgh Hacklab, Edinburgh, UK
| | - Edward Andò
- EPFL Center for Imaging, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Andrew Curtis
- School of GeoSciences, University of Edinburgh, Edinburgh, UK
| | - Andrew F Bell
- School of GeoSciences, University of Edinburgh, Edinburgh, UK
| | - Alyssa Crippen
- School of GeoSciences, University of Edinburgh, Edinburgh, UK
| | - Roberto E Rizzo
- School of GeoSciences, University of Edinburgh, Edinburgh, UK.,Department of Earth Sciences, University of Florence, Via La Pira 4, 50121, Florence, Italy
| | - Sina Marti
- School of GeoSciences, University of Edinburgh, Edinburgh, UK
| | - Derek D V Leung
- School of GeoSciences, University of Edinburgh, Edinburgh, UK
| | - Oxana V Magdysyuk
- Beamline I12-JEEP, Diamond Light Source Ltd., Harwell Science and Innovation Campus, Didcot, UK
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Xu W, Wu D, Yang T, Sun C, Wang Z, Han B, Wu S, Yu A, Chapman MA, Muraguri S, Tan Q, Wang W, Bao Z, Liu A, Li DZ. Genomic insights into the origin, domestication and genetic basis of agronomic traits of castor bean. Genome Biol 2021; 22:113. [PMID: 33874982 PMCID: PMC8056531 DOI: 10.1186/s13059-021-02333-y] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Accepted: 03/29/2021] [Indexed: 01/03/2023] Open
Abstract
BACKGROUND Castor bean (Ricinus communis L.) is an important oil crop, which belongs to the Euphorbiaceae family. The seed oil of castor bean is currently the only commercial source of ricinoleic acid that can be used for producing about 2000 industrial products. However, it remains largely unknown regarding the origin, domestication, and the genetic basis of key traits of castor bean. RESULTS Here we perform a de novo chromosome-level genome assembly of the wild progenitor of castor bean. By resequencing and analyzing 505 worldwide accessions, we reveal that the accessions from East Africa are the extant wild progenitors of castor bean, and the domestication occurs ~ 3200 years ago. We demonstrate that significant genetic differentiation between wild populations in Kenya and Ethiopia is associated with past climate fluctuation in the Turkana depression ~ 7000 years ago. This dramatic change in climate may have caused the genetic bottleneck in wild castor bean populations. By a genome-wide association study, combined with quantitative trait locus analysis, we identify important candidate genes associated with plant architecture and seed size. CONCLUSIONS This study provides novel insights of domestication and genome evolution of castor bean, which facilitates genomics-based breeding of this important oilseed crop and potentially other tree-like crops in future.
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Affiliation(s)
- Wei Xu
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Di Wu
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Tianquan Yang
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Chao Sun
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Zaiqing Wang
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Bing Han
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Shibo Wu
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Anmin Yu
- Key Laboratory for Forest Resource Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming, 650224, China
| | - Mark A Chapman
- Biological Sciences and Centre for Underutilised Crops, University of Southampton, Southampton, SO17 1BJ, UK
| | - Sammy Muraguri
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Qing Tan
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Wenbo Wang
- Department of Economic Plants and Biotechnology, Yunnan Key Laboratory for Wild Plant Resources, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Zhigui Bao
- Shanghai OE Biotech Co., Ltd, Shanghai, 201114, China
| | - Aizhong Liu
- Key Laboratory for Forest Resource Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming, 650224, China.
| | - De-Zhu Li
- Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
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Glerum A, Brune S, Stamps DS, Strecker MR. Victoria continental microplate dynamics controlled by the lithospheric strength distribution of the East African Rift. Nat Commun 2020; 11:2881. [PMID: 32513970 PMCID: PMC7280495 DOI: 10.1038/s41467-020-16176-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2019] [Accepted: 04/09/2020] [Indexed: 11/24/2022] Open
Abstract
The Victoria microplate between the Eastern and Western Branches of the East African Rift System is one of the largest continental microplates on Earth. In striking contrast to its neighboring plates, Victoria rotates counterclockwise with respect to Nubia. The underlying cause of this distinctive rotation has remained elusive so far. Using 3D numerical models, we investigate the role of pre-existing lithospheric heterogeneities in continental microplate rotation. We find that Victoria’s rotation is primarily controlled by the distribution of rheologically stronger zones that transmit the drag of the major plates to the microplate and of the mechanically weaker mobile belts surrounding Victoria that facilitate rotation. Our models reproduce Victoria’s GPS-derived counterclockwise rotation as well as key complexities of the regional tectonic stress field. These results reconcile competing ideas on the opening of the rift system by highlighting differences in orientation of the far-field divergence, local extension, and the minimum horizontal stress. One of the largest continental microplates on Earth is situated in the center of the East African Rift System, and oddly, the Victoria microplate rotates counterclockwise with respect to the neighboring African tectonic plate. Here, the authors' modelling results suggest that Victoria microplate rotation is caused by edge-driven lithospheric processes related to the specific geometry of rheologically weak and strong regions.
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Affiliation(s)
- Anne Glerum
- Helmholtz Centre Potsdam - GFZ German Research Centre for Geosciences, Potsdam, Germany.
| | - Sascha Brune
- Helmholtz Centre Potsdam - GFZ German Research Centre for Geosciences, Potsdam, Germany.,University of Potsdam, Potsdam-Golm, Germany
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