1
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Clarke CJ, Burrow EM, Verlet JRR. The valence electron affinity of uracil determined by anion cluster photoelectron spectroscopy. Phys Chem Chem Phys 2024; 26:20037-20045. [PMID: 39007196 DOI: 10.1039/d4cp02146k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
The unoccupied π* orbitals of the nucleobases are considered to play important roles in low-energy electron attachment to DNA, inducing damage. While the lowest anionic valence state is vertically unbound in all neutral nucleobases, it remains unclear even for the simplest nucleobase, uracil (U), whether its valence anion (U-) is adiabatically bound, which has important implications on the efficacy of damage processes. Using anion photoelectron spectroscopy, we demonstrate that the valence electron affinity (EAV) of U can be accurately measured within weakly solvating clusters, U-(Ar)n and U-(N2)n. Through extrapolation to the isolated U limit, we show that EAV = -2 ± 18 meV. We discuss these findings in the context of electron attachment to U and its reorganization energy, and more generally establish guidance for the determination of molecular electron affinities from the photoelectron spectroscopy of anion clusters.
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Affiliation(s)
- Connor J Clarke
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
| | - E Michi Burrow
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic
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2
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Ashworth EK, Ashworth SH, Bull JN. Spectroscopy and dynamics of isolated anions: Versatile instrumentation for photodetachment and photoelectron spectroscopy. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2024; 95:075103. [PMID: 38984887 DOI: 10.1063/5.0207759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 06/19/2024] [Indexed: 07/11/2024]
Abstract
Molecular anions are appealing targets for study because, compared with their neutral and cationic counterparts, they can be probed with conventional laboratory lasers without the need for multiphoton ionization schemes, and they provide spectroscopic details on the corresponding neutral molecules. Here, we describe a section of a modular instrument designed to perform high-throughput photoelectron and photodetachment spectroscopy of gas-phase anions, with future provision for time-resolved and isomer-selective spectroscopy. The instrument framework allows for the incorporation and adaptation of several ion sources, as demonstrated here with plasma (electric) discharge sources providing variable hard to soft ion generation conditions. The generated anions are separated according to their mass-to-charge ratio through time-of-flight mass spectrometry (m/zΔm/z = 500-600) and are focused into a set of perpendicular velocity-map imaging electrodes (ΔEE≈4%), where mass-selected anions are probed using laser light and the ejected electrons are velocity-map imaged. Instrument performance is demonstrated through the acquisition of photodetachment and photoelectron spectra for CH2CN-, showing sharp resonances in the vicinity of the detachment threshold assigned to rovibrational states of a dipole-bound anion and broader lifetime-limited spectral features at photon energies well above the threshold assigned to prompt autodetachment from a temporary anion resonance. Similar measurements could be performed on any molecular anions generated in the sources.
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Affiliation(s)
- Eleanor K Ashworth
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | - Stephen H Ashworth
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | - James N Bull
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, United Kingdom
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3
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Mulvey D, Jordan KD. Demonstrating the Connection between the Nonvalence Correlation-Bound Anions of Polyaromatic Hydrocarbons and the Image Potential States of Graphene Using a One-Electron Model Hamiltonian. J Phys Chem Lett 2024; 15:6299-6305. [PMID: 38856081 PMCID: PMC11194819 DOI: 10.1021/acs.jpclett.4c01308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2024] [Revised: 05/29/2024] [Accepted: 06/04/2024] [Indexed: 06/11/2024]
Abstract
The ground and excited state nonvalence correlation-bound (NVCB) anion states of the C 6 n 2 H 6 n hexagonal polycylic aromatic hydrocarbons and of hexagonal C 6 n 2 graphene nanoflakes are characterized using a one-electron model Hamiltonian which incorporates atomic electrostatic moments up to the quadrupole, coupled inducible charges and dipoles, and atom-centered Gaussians to describe the short-range repulsive interactions. Extrapolation of the calculated electron binding energies of the lowest energy symmetric and antisymmetric (with respect to the molecular plane) NVCB anions of both the polycylic aromatic hydrocarbons and the carbon nanoflakes to the n → ∞ limit yields binding energies that are in good agreement with those of the most stable symmetric and antisymmetric image potential states of freestanding graphene as determined from two-photon photoemission spectroscopy (2PPE) experiments.
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Affiliation(s)
- Devin
M. Mulvey
- Department of Chemistry, University
of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
| | - Kenneth D. Jordan
- Department of Chemistry, University
of Pittsburgh, 219 Parkman Avenue, Pittsburgh, Pennsylvania 15260, United States
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4
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Clarke CJ, Verlet JRR. Dynamics of Anions: From Bound to Unbound States and Everything In Between. Annu Rev Phys Chem 2024; 75:89-110. [PMID: 38277700 DOI: 10.1146/annurev-physchem-090722-125031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2024]
Abstract
Gas-phase anions present an ideal playground for the exploration of excited-state dynamics. They offer control in terms of the mass, extent of solvation, internal temperature, and conformation. The application of a range of ion sources has opened the field to a vast array of anionic systems whose dynamics are important in areas ranging from biology to star formation. Here, we review recent experimental developments in the field of anion photodynamics, demonstrating the detailed insight into photodynamical and electron-capture processes that can be uncovered. We consider the electronic and nuclear ultrafast dynamics of electronically bound excited states along entire reaction coordinates; electronically unbound states showing that photochemical concepts, such as chromophores and Kasha's rule, are transferable to electron-driven chemistry; and nonvalence states that straddle the interface between bound and unbound states. Finally, we consider likely developments that are sure to keep the field of anion dynamics buoyant and impactful.
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Affiliation(s)
- Connor J Clarke
- Department of Chemistry, Durham University, Durham, United Kingdom;
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham, United Kingdom;
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5
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Issler K, Mitrić R, Petersen J. HORTENSIA, a program package for the simulation of nonadiabatic autoionization dynamics in molecules. J Chem Phys 2023; 159:134801. [PMID: 37787145 DOI: 10.1063/5.0167412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 09/11/2023] [Indexed: 10/04/2023] Open
Abstract
We present a program package for the simulation of ultrafast vibration-induced autoionization dynamics in molecular anions in the manifold of the adiabatic anionic states and the discretized ionization continuum. This program, called HORTENSIA (Hopping Real-time Trajectories for Electron-ejection by Nonadiabatic Self-Ionization in Anions), is based on the nonadiabatic surface-hopping methodology, wherein nuclei are propagated as an ensemble along classical trajectories in the quantum-mechanical potential created by the electronic density of the molecular system. The electronic Schrödinger equation is numerically integrated along the trajectory, providing the time evolution of electronic state coefficients, from which switching probabilities into discrete electronic states are determined. In the case of a discretized continuum state, this hopping event is interpreted as the ejection on an electron. The derived diabatic and nonadiabatic couplings in the time-dependent electronic Schrödinger equation are calculated from anionic and neutral wavefunctions obtained from quantum-chemical calculations with commercially available program packages interfaced with our program. Based on this methodology, we demonstrate the simulation of autoionization electron kinetic energy spectra that are both time- and angle-resolved. In addition, the program yields data that can be interpreted easily with respect to geometric characteristics, such as bonding distances and angles, which facilitate the detection of molecular configurations important for the autoionization process. Furthermore, several useful extensions are included, namely, tools for the generation of initial conditions and input files as well as for the evaluation of output files, all of this both through console commands and a graphical user interface.
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Affiliation(s)
- Kevin Issler
- Julius-Maximilians-Universität Würzburg, Institut für Physikalische und Theoretische Chemie, Emil-Fischer-Str. 42, 97074 Würzburg, Germany
| | - Roland Mitrić
- Julius-Maximilians-Universität Würzburg, Institut für Physikalische und Theoretische Chemie, Emil-Fischer-Str. 42, 97074 Würzburg, Germany
| | - Jens Petersen
- Julius-Maximilians-Universität Würzburg, Institut für Physikalische und Theoretische Chemie, Emil-Fischer-Str. 42, 97074 Würzburg, Germany
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6
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Boichenko AN, Bochenkova AV. Accurate Vertical Electron Detachment Energies and Multiphoton Resonant Photoelectron Spectra of Biochromophore Anions in Aqueous Solution. J Chem Theory Comput 2023. [PMID: 37146177 DOI: 10.1021/acs.jctc.2c01082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
We introduce a new methodology for calculating vertical electron detachment energies (VDEs) of biologically relevant chromophores in their deprotonated anionic forms in aqueous solution. It combines a large-scale mixed DFT/EFP/MD approach with the high-level multireference perturbation theory XMCQDPT2 and the Effective Fragment Potential (EFP) method. The methodology includes a multiscale flexible treatment of inner (∼1000 water molecules) and outer (∼18000 water molecules) water shells around a charged solute, capturing both the effects of specific solvation and the properties of bulk water. VDEs are calculated as a function of system size for getting a converged value at the DFT/EFP level of theory. The XMCQDPT2/EFP approach, adapted for calculating VDEs, supports the DFT/EFP results. When corrected for a solvent polarization contribution, the XMCQDPT2/EFP method yields the most accurate estimate to date of the first VDE for aqueous phenolate (7.3 ± 0.1 eV), which agrees well with liquid-jet X-ray photoelectron spectroscopy data (7.1 ± 0.1 eV). We show that the geometry of the water shell and its size are essential for accurate VDE calculations of aqueous phenolate and its biologically relevant derivatives. By simulating photoelectron spectra of aqueous phenolate upon two-photon excitation at wavelengths resonant with the S0 → S1 transition, we also provide interpretation of recent multiphoton UV liquid-microjet photoelectron spectroscopy experiments. We show that its first VDE is consistent with our estimate of 7.3 eV, when experimental two-photon binding energies are corrected for the resonant contribution.
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Affiliation(s)
- Anton N Boichenko
- Department of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia
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7
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Issler K, Mitrić R, Petersen J. Quantum-classical dynamics of vibration-induced autoionization in molecules. J Chem Phys 2023; 158:034107. [PMID: 36681633 DOI: 10.1063/5.0135392] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
We present a novel method for the simulation of the vibration-induced autoionization dynamics in molecular anions in the framework of the quantum-classical surface hopping approach. Classical trajectories starting from quantum initial conditions are propagated on a quantum-mechanical potential energy surface while allowing for autoionization through transitions into discretized continuum states. These transitions are induced by the couplings between the electronic states of the bound anionic system and the electron-detached system composed of the neutral molecule and the free electron. A discretization scheme for the detached system is introduced, and a set of formulas is derived that enable the approximate calculation of couplings between the bound and free-electron states. We demonstrate our method on the example of the anion of vinylidene, a high-energy isomer of acetylene, for which detailed experimental data are available. Our results provide information on the time scale of the autoionization process and give insight into the energetic and angular distribution of the ejected electrons, as well as the associated changes in the molecular geometry. We identify the formation of structures with reduced C-C bond lengths and T-like conformations through bending of the CH2 group with respect to the C-C axis and point out the role of autoionization as a driving process for the isomerization to acetylene.
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Affiliation(s)
- Kevin Issler
- Institut für physikalische und theoretische Chemie, Julius-Maximilians-Universität Würzburg, Emil-Fischer-Str. 42, 97074 Würzburg, Germany
| | - Roland Mitrić
- Institut für physikalische und theoretische Chemie, Julius-Maximilians-Universität Würzburg, Emil-Fischer-Str. 42, 97074 Würzburg, Germany
| | - Jens Petersen
- Institut für physikalische und theoretische Chemie, Julius-Maximilians-Universität Würzburg, Emil-Fischer-Str. 42, 97074 Würzburg, Germany
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8
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Kang DH, Kim J, Eun HJ, Kim SK. State-Specific Chemical Dynamics of the Nonvalence Bound State of the Molecular Anions. Acc Chem Res 2022; 55:3032-3042. [PMID: 36206486 DOI: 10.1021/acs.accounts.2c00512] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Nonvalence bound states (NBS) are anionic states where the excess electron is extremely loosely bound to the neutral core through long-range potentials. In contrast to the valence orbitals of which the electron occupancy determines the molecular structure, as well as the chemical reactivity, the nonvalence orbital is quite diffuse and located far from the neutral core. The NBS can be classified into the dipole-bound state (DBS), quadruple-bound state (QBS), or correlation-bound state (CBS) according to the nature of the electron-neutral interaction, although their interaction potentials may cooperatively contribute. The NBS is ubiquitous in nature and has the strong implications in atmospheric, interstellar, or biological chemistry. Accordingly, NBS has long been conceived to play the role of the doorway into the formation of a stable anion or dissociative electron attachment (DEA). Despite intensive and extensive studies, however, the quantum-mechanical nature of NBS is still far from being thorough understanding. Herein, we describe a new aspect of state-specific NBS-mediated chemical dynamics, which has been revealed through a series of recent studies by our group. We have employed picosecond time-resolved pump-probe spectroscopy combined with cryogenically cooled ion trap and velocity-map imaging techniques to study closed-shell anions generated by electrospray ionization. DBS vibrational Feshbach resonances are prepared by the optical excitation of phenoxide, for instance, and their individual lifetimes have been precisely measured in a state-specific manner to reveal the strong mode-dependency of the autodetachment rate. Fermi's golden rule turns out to be extremely useful for a rational explanation of the experiment, although the more sophisticated theoretical model is desirable for the more quantitative analysis. For the DBS of para-chlorophenoxide or para-bromophenoxide where the polarizability of neutral core is substantial, the Fermi's golden rule based on the charge-dipole potential needs to be significantly modified to include the correlation effects to explain the exceptionally slow autodetachment rates. For the QBS of 4-cyanophenoxide, the mode-specific behavior of the quadrupole ellipsoid tensor explains the strong mode-dependent autodetachment rate. Meanwhile, the nonadiabatic transition of the excess electron into the valence orbital can result in stable anion formation or immediate chemical bond rupture. In the DBS of ortho-, meta-, or para-iodophenoxide, the transformation of the loosely bound excess electron into the πσ* antibonding orbital occurs to give I- as a final fragment. The fragmentation mediated by DBS occurs competitively with the concomitant autodetachment, paving a new way of the reaction control by tuning the quantum-mechanical nature of the DBS Feshbach resonance. This experimental observation provides the foremost evidence for the dynamic role of the DBS as a doorway into anion chemistry, such as DEA. The ponderomotive force on the electron in the nonvalence orbital has been demonstrated for the first time in a strong optical field, giving great promise for the manipulation of polyatomic molecules in terms of the spatial location, as well as the AC-Stark control of the chemical reaction.
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Affiliation(s)
- Do Hyung Kang
- Department of Chemistry, KAIST, Daejeon34141, Republic of Korea
| | - Jinwoo Kim
- Department of Chemistry, KAIST, Daejeon34141, Republic of Korea
| | - Han Jun Eun
- Department of Chemistry, KAIST, Daejeon34141, Republic of Korea
| | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon34141, Republic of Korea
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9
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Ashworth E, Coughlan NJA, Hopkins WS, Bieske EJ, Bull JN. Excited-State Barrier Controls E → Z Photoisomerization in p-Hydroxycinnamate Biochromophores. J Phys Chem Lett 2022; 13:9028-9034. [PMID: 36149746 PMCID: PMC9549896 DOI: 10.1021/acs.jpclett.2c02613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Accepted: 09/21/2022] [Indexed: 06/16/2023]
Abstract
Molecules based on the deprotonated p-hydroxycinnamate moiety are widespread in nature, including serving as UV filters in the leaves of plants and as the biochromophore in photoactive yellow protein. The photophysical behavior of these chromophores is centered around a rapid E → Z photoisomerization by passage through a conical intersection seam. Here, we use photoisomerization and photodissociation action spectroscopies with deprotonated 4-hydroxybenzal acetone (pCK-) to characterize a wavelength-dependent bifurcation between electron autodetachment (spontaneous ejection of an electron from the S1 state because it is situated in the detachment continuum) and E → Z photoisomerization. While autodetachment occurs across the entire S1(ππ*) band (370-480 nm), E → Z photoisomerization occurs only over a blue portion of the band (370-430 nm). No E → Z photoisomerization is observed when the ketone functional group in pCK- is replaced with an ester or carboxylic acid. The wavelength-dependent bifurcation is consistent with potential energy surface calculations showing that a barrier separates the Franck-Condon region from the E → Z isomerizing conical intersection. The barrier height, which is substantially higher in the gas phase than in solution, depends on the functional group and governs whether E → Z photoisomerization occurs more rapidly than autodetachment.
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Affiliation(s)
- Eleanor
K. Ashworth
- School
of Chemistry, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | - Neville J. A. Coughlan
- Department
of Chemistry, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
- WaterMine
Innovation, Inc., Waterloo, Ontario N0B 2T0, Canada
| | - W. Scott Hopkins
- Department
of Chemistry, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
- WaterMine
Innovation, Inc., Waterloo, Ontario N0B 2T0, Canada
| | - Evan J. Bieske
- School
of Chemistry, University of Melbourne, Parkville, VIC 3010, Australia
| | - James N. Bull
- School
of Chemistry, University of East Anglia, Norwich NR4 7TJ, United Kingdom
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10
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Kang DH, Kim J, Eun HJ, Kim SK. Experimental Observation of the Resonant Doorways to Anion Chemistry: Dynamic Role of Dipole-Bound Feshbach Resonances in Dissociative Electron Attachment. J Am Chem Soc 2022; 144:16077-16085. [PMID: 35973092 DOI: 10.1021/jacs.2c06334] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Anion chemical dynamics of autodetachment and fragmentation mediated by the dipole-bound state (DBS) have been thoroughly investigated in a state-specific way by employing the picosecond time-resolved or the nanosecond frequency-resolved spectroscopy combined with the cryogenically cooled ion trap and velocity-map imaging techniques. For the ortho-, meta-, or para-iodophenoxide anion (o-, m-, or p-IPhO-), the C-I bond rupture occurs via the nonadiabatic transition from the DBS to the nearby valence-bound states (VBS) of the anion where the vibronic coupling into the S1 (πσ*) state (repulsive along the C-I bond extension coordinate) should be largely responsible. Dynamic details are governed by the isomer-specific nature of the potential energy surfaces in the vicinity of the DBS-VBS curve crossings, as manifested in the huge different chemical reactivity of o-, m-, or p-IPhO-. It is confirmed here that the C-I bond dissociation is mediated by DBS resonances, providing the foremost evidence that the metastable DBS plays the critical role as the doorway into the anion chemistry especially of the dissociative electron attachment (DEA). The fragmentation channel is dominant when it is mediated by the DBS resonances located below the electron-affinity (EA) threshold, whereas it is kinetically adjusted by the competitive autodetachment when the DBS resonances above EA convey the electron to the valence orbitals. The product yield of the C-I bond cleavage is strongly mode-dependent as the rate of the concomitant autodetachment is much influenced by the characteristics of the individual vibrational modes, paving a new way of the reaction control of the anion chemistry.
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Affiliation(s)
- Do Hyung Kang
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Jinwoo Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Han Jun Eun
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
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11
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Ranković M, Nag P, Anstöter CS, Mensa-Bonsu G, Kumar T P R, Verlet JRR, Fedor J. Resonances in nitrobenzene probed by the electron attachment to neutral and by the photodetachment from anion. J Chem Phys 2022; 157:064302. [PMID: 35963718 DOI: 10.1063/5.0101358] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We probe resonances (transient anions) in nitrobenzene with the focus on the electron emission from these. Experimentally, we populate resonances in two ways: either by the impact of free electrons on the neutral molecule or by the photoexcitation of the bound molecular anion. These two excitation means lead to transient anions in different initial geometries. In both cases, the anions decay by electron emission and we record the electron spectra. Several types of emission are recognized, differing by the way in which the resulting molecule is vibrationally excited. In the excitation of specific vibrational modes, distinctly different modes are visible in electron collision and photodetachment experiments. The unspecific vibrational excitation, which leads to the emission of thermal electrons following the internal vibrational redistribution, shows similar features in both experiments. A model for the thermal emission based on a detailed balance principle agrees with the experimental findings very well. Finally, a similar behavior in the two experiments is also observed for a third type of electron emission, the vibrational autodetachment, which yields electrons with constant final energies over a broad range of excitation energies. The entrance channels for the vibrational autodetachment are examined in detail, and they point to a new mechanism involving a reverse valence to non-valence internal conversion.
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Affiliation(s)
- Miloš Ranković
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
| | - Pamir Nag
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
| | - Cate S Anstöter
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Golda Mensa-Bonsu
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Ragesh Kumar T P
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Juraj Fedor
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
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12
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Anstöter CS, Verlet JRR. A Hückel Model for the Excited-State Dynamics of a Protein Chromophore Developed Using Photoelectron Imaging. Acc Chem Res 2022; 55:1205-1213. [PMID: 35172580 PMCID: PMC9084545 DOI: 10.1021/acs.accounts.1c00780] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Chemistry can be described as the movement of nuclei within molecules and the concomitant instantaneous change in electronic structure. This idea underpins the central chemical concepts of potential energy surfaces and reaction coordinates. To experimentally capture such chemical change therefore requires methods that can probe both the nuclear and electronic structure simultaneously and on the time scale of atomic motion. In this Account, we show how time-resolved photoelectron imaging can do exactly this and how it can be used to build a detailed and intuitive understanding of the electronic structure and excited-state dynamics of chromophores. The chromophore of the photoactive yellow protein (PYP) is used as a case study. This chromophore contains a para-substituted phenolate anion, where the substituent, R, can be viewed as an acrolein derivative. It is shown that the measured photoelectron angular distribution can be directly related to the electronic structure of the para-substituted phenolate anion. By incrementally considering differing R groups, it is also shown that these photoelectron angular distributions are exquisitely sensitive to the conformational flexibility of R and that when R contains a π-system the excited states of the chromophore can be viewed as a linear combination of the π* molecular orbitals on the phenolate (πPh*) and the R substituent (πR*). Such Hückel treatment shows that the S1 state of the PYP chromophore has predominantly πR* character and that it is essentially the same as the chromophore of the green fluorescent protein (GFP). The S1 excited-state dynamics of the PYP chromophore probed by time-resolved photoelectron imaging clearly reveals both structural (nuclear) dynamics through the energy spectrum and electronic dynamics through the photoelectron angular distributions. Both motions can be accurately assigned using quantum chemical calculations, and these are consistent with the intuitive Hückel treatment presented. The photoactive protein chromophores considered here are examples of where a chemists' intuitive Hückel view for ground-state chemistry appears to be transferable to the prediction of photochemical excited-state reactivity. While elegant and insightful, such models have limitations, including nonadiabatic dynamics, which is present in a related PYP chromophore, where a fraction of the S1 state population forms a nonvalence (dipole-bound) state of the anion.
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Affiliation(s)
- Cate S. Anstöter
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Jan R. R. Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
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13
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Schuurman MS, Blanchet V. Time-resolved photoelectron spectroscopy: the continuing evolution of a mature technique. Phys Chem Chem Phys 2022; 24:20012-20024. [PMID: 35297909 DOI: 10.1039/d1cp05885a] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Time-resolved photoelectron spectroscopy (TRPES) has become one of the most widespread techniques for probing nonadiabatic dynamics in the excited electronic states of molecules. Furthermore, the complementary development of ab initio approaches for the simulation of TRPES signals has enabled the interpretation of these transient spectra in terms of underlying coupled electronic-nuclear dynamics. In this perspective, we discuss the current state-of-the-art approaches, including efforts to push femtosecond pulses into vacuum ultraviolet and soft X-ray regimes as well as the utilization of novel polarizations to use time-resolved optical activity as a probe of nonadiabatic dynamics. We close this perspective with a forward-looking prospectus on the new areas of application for this technique.
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Affiliation(s)
- Michael S Schuurman
- National Research Council of Canada, 100 Sussex Dr, Ottawa, ON, K1N 6B9, Canada.,Department of Chemistry and Biomolecular Sciences, University of Ottawa, 10 Marie Curie Dr, Ottawa, ON, Canada.
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14
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Kang DH, Kim J, Kim SK. Dynamic role of the correlation effect revealed in the exceptionally slow autodetachment rates of the vibrational Feshbach resonances in the dipole-bound state. Chem Sci 2022; 13:2714-2720. [PMID: 35356673 PMCID: PMC8890126 DOI: 10.1039/d1sc05481c] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Accepted: 02/03/2022] [Indexed: 11/21/2022] Open
Abstract
Real-time autodetachment dynamics of the loosely bound excess electron from the vibrational Feshbach resonances of the dipole-bound states (DBS) of 4-bromophonoxide (4-BrPhO-) and 4-chlorophenoxide (4-ClPhO-) anions have been thoroughly investigated. The state-specific autodetachment rate measurements obtained by the picosecond time-resolved pump-probe method on the cryogenically cooled anions exhibit an exceptionally long lifetime (τ) of ∼823 ± 156 ps for the 11'1 vibrational mode of the 4-BrPhO- DBS. Strong mode-dependency in the wide dynamic range has also been found, giving τ ∼ 5.3 ps for the 10'1 mode, for instance. Though it is nontrivial to get the state-specific rates for the 4-ClPhO- DBS, the average autodetachment lifetime of the 19'120'1/11'1 mode has been estimated to be ∼548 ± 108 ps. Observation of these exceptionally slow autodetachment rates of vibrational Feshbach resonances strongly indicates that the correlation effect may play a significant role in the DBS photodetachment dynamics. Fermi's golden rule has been invoked so that the correlation effect is taken into account in the form of the interaction between the charge and the induced dipole where the latter is given by the polarizable counterparts of the electron-rich halogenated compound and the diffuse non-valence electron. This report suggests that one may measure, from the real-time autodetachment dynamics, the extent of the correlation effect contribution to the stabilization and/or dynamics of the excess non-valence electron among many different types of long-range interactions of the DBS.
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Affiliation(s)
- Do Hyung Kang
- Department of Chemistry, KAIST Daejeon 34141 Republic of Korea
| | - Jinwoo Kim
- Department of Chemistry, KAIST Daejeon 34141 Republic of Korea
| | - Sang Kyu Kim
- Department of Chemistry, KAIST Daejeon 34141 Republic of Korea
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15
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Yuan DF, Zhang YR, Qian CH, Wang LS. Resonant two-photon photoelectron imaging and adiabatic detachment processes from bound vibrational levels of dipole-bound states. Phys Chem Chem Phys 2022; 24:1380-1389. [PMID: 34981094 DOI: 10.1039/d1cp05219e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Anions cannot have Rydberg states, but anions with polar neutral cores can support highly diffuse dipole-bound states (DBSs) as a class of interesting electronically excited states below the electron detachment threshold. The binding energies of DBSs are extremely small, ranging from a few to few hundred wavenumbers and generally cannot support bound vibrational levels below the detachment threshold. Thus, vibrational excitations in the DBS are usually above the electron detachment threshold and they have been used to conduct resonant photoelectron spectroscopy, which is dominated by state-specific autodetachment. Here we report an investigation of a cryogenically-cooled complex anion, the enantiopure (R)-(-)-1-(9-anthryl)-2,2,2-trifluoroethanolate (R-TFAE-). The neutral R-TFAE radical is relatively complex and highly polar with a non-planar structure (C1 symmetry). Photodetachment spectroscopy reveals a DBS 209 cm-1 below the detachment threshold of R-TFAE- and seven bound and eight above-threshold vibrational levels of the DBS. Resonant two-photon detachment (R2PD) via the bound vibrational levels of the DBS exhibits strictly adiabatic photodetachment behaviors by the second photon, in which the vibrational energies in the DBS are carried to the neutral final states, because of the parallel potential energy surfaces of the DBS and the corresponding neutral ground electronic state. Relaxation processes from the bound DBS levels to the ground and low-lying electronically excited states of R-TFAE- are also observed in the R2PD photoelectron spectra. The combination of photodetachment and resonant photoelectron spectroscopy yields frequencies for eight vibrational modes of the R-TFAE radical.
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Affiliation(s)
- Dao-Fu Yuan
- Department of Chemsitry, Brown University, Providence, RI 02912, USA.
| | - Yue-Rou Zhang
- Department of Chemsitry, Brown University, Providence, RI 02912, USA.
| | - Chen-Hui Qian
- Department of Chemsitry, Brown University, Providence, RI 02912, USA.
| | - Lai-Sheng Wang
- Department of Chemsitry, Brown University, Providence, RI 02912, USA.
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16
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Anstöter CS, Curchod BFE, Verlet JRR. Photo-isomerization of the isolated photoactive yellow protein chromophore: what comes before the primary step? Phys Chem Chem Phys 2022; 24:1305-1309. [PMID: 34984423 DOI: 10.1039/d1cp05259d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Photoactive proteins typically rely on structural changes in a small chromophore to initiate a biological response. While these changes often involve isomerization as the "primary step", preceding this is an ultrafast relaxation of the molecular framework caused by the sudden change in electronic structure upon photoexcitation. Here, we capture this motion for an isolated model chromophore of the photoactive yellow protein using time-resolved photoelectron imaging. It occurs in <150 fs and is apparent from a spectral shift of ∼70 meV and a change in photoelectron anisotropy. Electronic structure calculations enable the quantitative assignment of the geometric and electronic structure changes to a planar intermediate from which the primary step can then proceed.
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Affiliation(s)
- Cate S Anstöter
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
| | | | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, UK.
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17
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Asfandiarov NL, Muftakhov MV, Pshenichnyuk SA, Rakhmeev RG, Safronov AM, Markova AV, Vorob'ev AS, Luxford TFM, Kočišek J, Fedor J. Non-covalent anion structures in dissociative electron attachment to some brominated biphenyls. J Chem Phys 2021; 155:244302. [PMID: 34972364 DOI: 10.1063/5.0074013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The present work combines experiment and theory to reveal the behavior of bromo-substituted-biphenyls after an electron attachment. We experimentally determine anion lifetimes using an electron attachment-magnetic sector mass spectrometer instrument. Branching ratios of dissociative electron attachment fragments on longer timescales are determined using the electron attachment-quadrupole mass spectrometer instrument. In all cases, fragmentation is low: Only the Br- and [M-Br]- ions are detected, and [M-H]- is observed only in the case of 4-Br-biphenyl and parent anion lifetimes as long as 165 µs are observed. Such lifetimes are contradictory to the dissociation rates of 2- and 4-bromobiphenyl, as measured by the pulse radiolysis method to be 3.2 × 1010 and >5 × 1010 s-1, respectively. The discrepancy is plausibly explained by our calculation of the potential energy surface of the dissociating anion. Isolated in vacuum, the bromide anion can orbit the polarized aromatic radical at a long distance. A series of local minima on the potential energy surface allows for a roaming mechanism prolonging the detection time of such weakly bound complex anions. The present results illuminate the behavior recently observed in a series of bromo-substituted compounds of biological as well as technological relevance.
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Affiliation(s)
- N L Asfandiarov
- Institute of Molecule and Crystal Physics - Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences, Prospekt Oktyabrya 151, Ufa 450075, Russia
| | - M V Muftakhov
- Institute of Molecule and Crystal Physics - Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences, Prospekt Oktyabrya 151, Ufa 450075, Russia
| | - S A Pshenichnyuk
- Institute of Molecule and Crystal Physics - Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences, Prospekt Oktyabrya 151, Ufa 450075, Russia
| | - R G Rakhmeev
- Institute of Molecule and Crystal Physics - Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences, Prospekt Oktyabrya 151, Ufa 450075, Russia
| | - A M Safronov
- Institute of Molecule and Crystal Physics - Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences, Prospekt Oktyabrya 151, Ufa 450075, Russia
| | - A V Markova
- Institute of Molecule and Crystal Physics - Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences, Prospekt Oktyabrya 151, Ufa 450075, Russia
| | - A S Vorob'ev
- Moscow Institute of Physics and Technology, Institutskiy Pereulok 9, 141700 Dolgoprudny, Moscow Region, Russia
| | - T F M Luxford
- Department of Dynamics of Molecules and Clusters, J. Heyrovský Institute of Physical Chemistry of Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic
| | - J Kočišek
- Department of Dynamics of Molecules and Clusters, J. Heyrovský Institute of Physical Chemistry of Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic
| | - J Fedor
- Department of Dynamics of Molecules and Clusters, J. Heyrovský Institute of Physical Chemistry of Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic
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18
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Bull JN, Anstöter CS, Stockett MH, Clarke CJ, Gibbard JA, Bieske EJ, Verlet JRR. Nonadiabatic Dynamics between Valence, Nonvalence, and Continuum Electronic States in a Heteropolycyclic Aromatic Hydrocarbon. J Phys Chem Lett 2021; 12:11811-11816. [PMID: 34870432 DOI: 10.1021/acs.jpclett.1c03532] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Internal conversion between valence-localized and dipole-bound states is thought to be a ubiquitous process in polar molecular anions, yet there is limited direct evidence. Here, photodetachment action spectroscopy and time-resolved photoelectron imaging with a heteropolycyclic aromatic hydrocarbon (hetero-PAH) anion, deprotonated 1-pyrenol, is used to demonstrate a subpicosecond (τ1 = 160 ± 20 fs) valence to dipole-bound state internal conversion following excitation of the origin transition of the first valence-localized excited state. The internal conversion dynamics are evident in the photoelectron spectra and in the photoelectron angular distributions (β2 values) as the electronic character of the excited state population changes from valence to nonvalence. The dipole-bound state subsequently decays through mode-specific vibrational autodetachment with a lifetime τ2 = 11 ± 2 ps. These internal conversion and autodetachment dynamics are likely common in molecular anions but difficult to fingerprint due to the transient existence of the dipole-bound state. Potential implications of the present excited state dynamics for interstellar hetero-PAH anion formation are discussed.
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Affiliation(s)
- James N Bull
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | - Cate S Anstöter
- Department of Chemistry, Temple University, 1901 N 13th Street, Philadelphia, Pennsylvania 19122, United States
| | - Mark H Stockett
- Department of Physics, Stockholm University, Stockholm SE-106 91, Sweden
| | - Connor J Clarke
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Jemma A Gibbard
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Evan J Bieske
- School of Chemistry, University of Melbourne, Melbourne, VIC 3010, Australia
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
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19
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Kang DH, Kim J, Noh HR, Kim SK. Observation of the ponderomotive effect in non-valence bound states of polyatomic molecular anions. Nat Commun 2021; 12:7098. [PMID: 34876596 PMCID: PMC8651741 DOI: 10.1038/s41467-021-27468-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Accepted: 11/22/2021] [Indexed: 12/03/2022] Open
Abstract
The ponderomotive force on molecular systems has rarely been observed hitherto, despite potentially being extremely useful for the manipulation of the molecular properties. Here, the ponderomotive effect in the non-valence bound states has been experimentally demonstrated, for the first time to the best of our knowledge, giving great promise for the manipulation of polyatomic molecules by the dynamic Stark effect. Entire quantum levels of the dipole-bound state (DBS) and quadrupole-bound state (QBS) of the phenoxide (or 4-bromophenoxide) and 4-cyanophenoxide anions, respectively, show clear-cut ponderomotive blue-shifts in the presence of the spatiotemporally overlapped non-resonant picosecond control laser pulse. The quasi-free electron in the QBS is found to be more vulnerable to the external oscillating electromagnetic field compared to that in the DBS, suggesting that the non-valence orbital of the former is more diffusive and thus more polarizable compared to that of the latter.
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Affiliation(s)
- Do Hyung Kang
- grid.37172.300000 0001 2292 0500Department of Chemistry, KAIST, Daejeon, 34141 Republic of Korea
| | - Jinwoo Kim
- grid.37172.300000 0001 2292 0500Department of Chemistry, KAIST, Daejeon, 34141 Republic of Korea
| | - Heung-Ryoul Noh
- grid.14005.300000 0001 0356 9399Department of Physics, Chonnam National University, Gwangju, 61186 Republic of Korea
| | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon, 34141, Republic of Korea.
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20
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Cao W, Zhang H, Yuan Q, Zhou X, Kass SR, Wang XB. Observation and Exploitation of Spin-Orbit Excited Dipole-Bound States in Ion-Molecule Clusters. J Phys Chem Lett 2021; 12:11022-11028. [PMID: 34739238 DOI: 10.1021/acs.jpclett.1c03309] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
We report an observation of spin-orbit excited dipole-bound states (DBSs) in arginine-iodide complexes (Arg·I-) by using temperature-dependent, wavelength-resolved "iodide-tagging" negative ion photoelectron spectroscopy. The observed DBSs are bound to the spin-orbit excited I(2P1/2) level of the neutral Arg·I complex in zwitterionic conformations and identified based on the resonant enhancement due to spin-orbit electronic autodetachment from the I(2P1/2) DBS to the I(2P3/2) neutral ground state. The observed DBS binding energies are correlated to the dipole moments of neutral Arg·I isomers and tautomers. This work thus demonstrates a new and generic spectroscopic approach to identify ion-molecule cluster conformations based on their distinguishable dipole moments.
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Affiliation(s)
- Wenjin Cao
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Hanhui Zhang
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
- Hefei National Laboratory for Physical Sciences at the Microscale, Department of Chemical Physics, University of Science and Technology of China, Hefei, Anhui 230026, P.R. China
| | - Qinqin Yuan
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Xiaoguo Zhou
- Hefei National Laboratory for Physical Sciences at the Microscale, Department of Chemical Physics, University of Science and Technology of China, Hefei, Anhui 230026, P.R. China
| | - Steven R Kass
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, United States
| | - Xue-Bin Wang
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
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21
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Hsieh M, Huang G, Yu JK. Dipole‐bound states and substituent effects of Breslow intermediates in the enolate form. J CHIN CHEM SOC-TAIP 2021. [DOI: 10.1002/jccs.202100310] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Ming‐Hsiu Hsieh
- Institute of Bioinformatics and Systems Biology National Yang Ming Chiao Tung University Hsinchu Taiwan
| | - Gou‐Tao Huang
- Department of Biological Science and Technology National Yang Ming Chiao Tung University Hsinchu Taiwan
| | - Jen‐Shiang K. Yu
- Institute of Bioinformatics and Systems Biology, Department of Biological Science and Technology, and Institute of Molecular Medicine and Bioengineering National Yang Ming Chiao Tung University Hsinchu Taiwan
- Center for Intelligent Drug Systems and Smart Bio‐Devices National Yang Ming Chiao Tung University Hsinchu Taiwan
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22
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Coughlan NJA, Stockett MH, Kjær C, Ashworth EK, Bulman Page PC, Meech SR, Brøndsted Nielsen S, Blancafort L, Hopkins WS, Bull JN. Action spectroscopy of the isolated red Kaede fluorescent protein chromophore. J Chem Phys 2021; 155:124304. [PMID: 34598549 DOI: 10.1063/5.0063258] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Incorporation of fluorescent proteins into biochemical systems has revolutionized the field of bioimaging. In a bottom-up approach, understanding the photophysics of fluorescent proteins requires detailed investigations of the light-absorbing chromophore, which can be achieved by studying the chromophore in isolation. This paper reports a photodissociation action spectroscopy study on the deprotonated anion of the red Kaede fluorescent protein chromophore, demonstrating that at least three isomers-assigned to deprotomers-are generated in the gas phase. Deprotomer-selected action spectra are recorded over the S1 ← S0 band using an instrument with differential mobility spectrometry coupled with photodissociation spectroscopy. The spectrum for the principal phenoxide deprotomer spans the 480-660 nm range with a maximum response at ≈610 nm. The imidazolate deprotomer has a blue-shifted action spectrum with a maximum response at ≈545 nm. The action spectra are consistent with excited state coupled-cluster calculations of excitation wavelengths for the deprotomers. A third gas-phase species with a distinct action spectrum is tentatively assigned to an imidazole tautomer of the principal phenoxide deprotomer. This study highlights the need for isomer-selective methods when studying the photophysics of biochromophores possessing several deprotonation sites.
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Affiliation(s)
- Neville J A Coughlan
- Department of Chemistry, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
| | - Mark H Stockett
- Department of Physics, Stockholm University, SE-10691 Stockholm, Sweden
| | - Christina Kjær
- Department of Physics and Astronomy, Aarhus University, Aarhus 8000, Denmark
| | - Eleanor K Ashworth
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | - Philip C Bulman Page
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | - Stephen R Meech
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | | | - Lluís Blancafort
- Institut de Química Computacional i Catálisi and Departament de Química, Universitat de Girona, C/M.A. Capmany 69, 17003 Girona, Spain
| | - W Scott Hopkins
- Department of Chemistry, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
| | - James N Bull
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, United Kingdom
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23
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Kang DH, Kim J, Kim SK. Recapture of the Nonvalence Excess Electron into the Excited Valence Orbital Leads to the Chemical Bond Cleavage in the Anion. J Phys Chem Lett 2021; 12:6383-6388. [PMID: 34232669 DOI: 10.1021/acs.jpclett.1c01789] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
The excess electron in the dipole-bound state (DBS) of the anion is found to be recaptured into the excited valence orbital localized at the positive end of the dipole, leading to the chemical bond cleavage of the anion. In the DBS of the 4-iodophenoxide anion, the extremely loosely bound electron (binding energy of 53 cm-1) is recaptured into the πσ* valence orbital, which is repulsive along the C-I bond extension coordinate, leading to the iodide (I-) and phenoxyl diradical (·C6H4O·) channel at the asymptotic limit. This is the first real-time observation of the state-specific relaxation (other than autodetachment) dynamics of the DBS and subsequent chemical reaction. The lifetime of the 4-iodophenoxide DBS at its zero-point energy (ZPE), which is measured for the cryogenically cooled trapped anion using the picosecond laser pump-probe scheme, has been estimated to be ∼9.5 ± 0.3 ps. Quantum mechanical calculations support the efficient transition from the DBS (below the detachment threshold) to the low-lying πσ* valence orbital of the first excited state of the anion. Similar experiments on 4-chlorophenoxide and 4-bromophenoxide anions indicate that the electron recaptures into excited valence orbitals hardly occur in the DBS of those anions, giving the long lifetimes (≫ns) at ZPE, suggesting that the internal conversion to S0 may be the major relaxation pathway for those anions.
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Affiliation(s)
- Do Hyung Kang
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Jinwoo Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
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24
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Kang DH, Kim J, Cheng M, Kim SK. Mode-Specific Autodetachment Dynamics of an Excited Non-valence Quadrupole-Bound State. J Phys Chem Lett 2021; 12:1947-1954. [PMID: 33591762 DOI: 10.1021/acs.jpclett.1c00169] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The autodetachment dynamics of vibrational Feshbach resonances of the quadrupole-bound state (QBS) for the first time has been investigated in real time for the first excited state of the 4-cyanophenoxide (4-CP) anion. Individual vibrational resonances of the cryogenically cooled 4-CP QBS have been unambiguously identified, and their autodetachment rates state-specifically measured using the picosecond time-resolved pump-probe technique employing the photoelectron velocity-map imaging method. The autodetachment lifetime (τ) is found to be strongly dependent on mode, giving τ values of ∼56, ∼27, and ≤2.8 ps for the 12'1 (Evib = 406 cm-1), 12'2 (Evib = 806 cm-1), and 21'1 (Evib = 220 cm-1) modes, respectively. The striking mode-specific behavior of the QBS lifetime has been invoked by the physical model in which the loosely bound electron falls off by the dynamic wobbling of the three-dimensional quadrupole moment ellipsoid associated with the corresponding vibrational motion in the autodetachment process.
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Affiliation(s)
- Do Hyung Kang
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Jinwoo Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Min Cheng
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
- Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
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25
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Kinoshita SN, Harabuchi Y, Inokuchi Y, Maeda S, Ehara M, Yamazaki K, Ebata T. Substitution effect on the nonradiative decay and trans → cis photoisomerization route: a guideline to develop efficient cinnamate-based sunscreens. Phys Chem Chem Phys 2021; 23:834-845. [PMID: 33284297 DOI: 10.1039/d0cp04402d] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Cinnamate derivatives are very useful as UV protectors in nature and as sunscreen reagents in daily life. They convert harmful UV energy to thermal energy through effective nonradiative decay (NRD) including trans → cis photoisomerization. However, the mechanism is not simple because different photoisomeirzation routes have been observed for different substituted cinnamates. Here, we theoretically examined the substitution effects at the phenyl ring of methylcinnamate (MC), a non-substituted cinnamate, on the electronic structure and the NRD route involving trans → cis isomerization based on time-dependent density functional theory. A systematic reaction pathway search using the single-component artificial force-induced reaction method shows that the very efficient photoisomerization route of MC can be essentially described as "1ππ* (trans) → 1nπ* → T1 (3ππ*) → S0 (trans or cis)". We found that for efficient 1ππ* (trans) → 1nπ* internal conversion (IC), MC should have the substituent at the appropriate position of the phenyl ring to stabilize the highest occupied π orbital. Substitution at the para position of MC slightly lowers the 1ππ* state energy and photoisomerization occurs via a slightly less efficient "1ππ* (trans) → 3nπ* → T1 (3ππ*) → S0 (trans or cis)" pathway. Substitution at the meta or ortho positions of MC significantly lowers the 1ππ* state energy so that the energy barrier of IC (1ππ* → 1nπ*) becomes very high. This substitution leads to a much longer 1ππ* state lifetime than that of MC and para-substituted MC, and a change in the dominant photoisomerization route to "1ππ* (trans) → C[double bond, length as m-dash]C bond twisting on 1ππ* → S0 (trans or cis)". As a whole, the "1ππ* → 1nπ*" IC observed in MC is the most important initial step for the rapid change of UV energy to thermal energy. We also found that the stabilization of the π orbital (i) minimizes the energy gap between 1ππ* and 1nπ* at the 1ππ* minimum and (ii) makes the 0-0 level of 1ππ* higher than 1nπ* as observed in MC. These MC-like relationships between the 1ππ* and 1nπ* energies should be ideal to maximize the "1ππ* → 1nπ*" IC rate constant according to Marcus theory.
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Affiliation(s)
- Shin-Nosuke Kinoshita
- Department of Chemistry, Graduate School of Science, Hiroshima University, Higashi-Hiroshima 739-8526, Japan.
| | - Yu Harabuchi
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan and Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo 001-0021, Japan
| | - Yoshiya Inokuchi
- Department of Chemistry, Graduate School of Science, Hiroshima University, Higashi-Hiroshima 739-8526, Japan.
| | - Satoshi Maeda
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan and Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo 001-0021, Japan
| | - Masahiro Ehara
- SOKENDAI, the Graduate University for Advanced Studies, Myodaiji, Okazaki 444-8585, Japan and Institute for Molecular Science and Research Center for Computational Science, 38, Myodaiji, Okazaki 444-8585, Japan
| | - Kaoru Yamazaki
- Institute for Materials Research, Tohoku University, Katahira 2-1-1, Aoba-ku, Sendai, 980-8577, Japan.
| | - Takayuki Ebata
- Department of Chemistry, Graduate School of Science, Hiroshima University, Higashi-Hiroshima 739-8526, Japan.
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26
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Mason JL, Harb H, Taka AA, McMahon AJ, Huizenga CD, Corzo H, Hratchian HP, Jarrold CC. Photoelectron Spectra of Gd2O2– and Nonmonotonic Photon-Energy-Dependent Variations in Populations of Close-Lying Neutral States. J Phys Chem A 2021; 125:857-866. [DOI: 10.1021/acs.jpca.0c11002] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Jarrett L. Mason
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Hassan Harb
- Department of Chemistry and Chemical Biology, University of California, Merced, 5200 North Lake Road, Merced, California 95343, United States
| | - Ali Abou Taka
- Department of Chemistry and Chemical Biology, University of California, Merced, 5200 North Lake Road, Merced, California 95343, United States
| | - Abbey J. McMahon
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Caleb D. Huizenga
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Hector Corzo
- Department of Chemistry and Chemical Biology, University of California, Merced, 5200 North Lake Road, Merced, California 95343, United States
| | - Hrant P. Hratchian
- Department of Chemistry and Chemical Biology, University of California, Merced, 5200 North Lake Road, Merced, California 95343, United States
| | - Caroline Chick Jarrold
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, United States
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27
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Ashworth EK, Anstöter CS, Verlet JRR, Bull JN. Autodetachment dynamics of 2-naphthoxide and implications for astrophysical anion abundance. Phys Chem Chem Phys 2021; 23:5817-5823. [PMID: 33686387 DOI: 10.1039/d1cp00261a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Astrochemical modelling has proposed that 10% or more of interstellar carbon could be tied up as polycyclic aromatic hydrocarbon (PAH) molecules. Developing reliable models of the interstellar carbon lifecycle requires calibration data obtained through laboratory studies on relevant chemical and physical processes, including on the photo-induced and electron-induced dynamics of potential interstellar PAHs. Here, the excited state dynamics of the S1(ππ*) state of 2-naphthoxide are investigated using frequency-, angle-, and time-resolved photoelectron imaging. Frequency-resolved photoelectron spectra taken over the S1(ππ*) band reveal low electron kinetic energy structure consistent with an indirect, vibrational mode-specific electron detachment mechanism. Time-resolved photoelectron imaging using a pump photon energy tuned to the 0-0 transition of the S1(ππ*) band (hν = 2.70 eV) and a non-resonant probe photon provides the excited state autodetachment lifetime at τ = 130 ± 10 fs. There is no evidence for internal conversion to the ground electronic state or a dipole-bound state. These results imply that 2-naphthoxide has no resilience to photodestruction through the absorption of visible radiation resonant with the S1(ππ*) band, and that electron capture by the S1(ππ*) state, which is formally a shape resonance, is not a doorway state to a stable interstellar anion.
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Affiliation(s)
- Eleanor K Ashworth
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, UK.
| | - Cate S Anstöter
- Department of Chemistry, Durham University, Durham, DH1 3LE, UK.
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham, DH1 3LE, UK.
| | - James N Bull
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, UK.
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28
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Upadhyay S, Dumi A, Shee J, Jordan KD. The role of high-order electron correlation effects in a model system for non-valence correlation-bound anions. J Chem Phys 2020; 153:224118. [DOI: 10.1063/5.0030942] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
Affiliation(s)
- Shiv Upadhyay
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - Amanda Dumi
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
| | - James Shee
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, USA
| | - Kenneth D. Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA
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29
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Kang DH, An S, Kim SK. Real-Time Autodetachment Dynamics of Vibrational Feshbach Resonances in a Dipole-Bound State. PHYSICAL REVIEW LETTERS 2020; 125:093001. [PMID: 32915603 DOI: 10.1103/physrevlett.125.093001] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Revised: 07/13/2020] [Accepted: 08/06/2020] [Indexed: 06/11/2023]
Abstract
Feshbach resonances corresponding to metastable vibrational states of the dipole-bound state (DBS) have been interrogated in real time for the first time. The state-specific autodetachment rates of the DBS of the phenoxide anion in the cryogenically cooled ion trap have been directly measured, giving τ∼33.5 ps for the lifetime of the most prominent 11^{'1} mode (519 cm^{-1}). Overall, the lifetime of the individual DBS state is strongly mode dependent to give τ∼5 ps for the 18^{'1} mode (632 cm^{-1}) and τ∼12 ps for the 11^{'2} mode (1036 cm^{-1}). The qualitative trend of the experiment could be successfully explained by the Fermi's golden rule. Autodetachment of the 11^{'1}18^{'1} combination mode is found to be much accelerated (τ≤1.4 ps) than expected, and its bifurcation dynamics into either the 11^{1}18^{0} or 11^{0}18^{1} state of the neutral core radical, according to the propensity rule of Δv=-1, could be distinctly differentiated through the photoelectron images to provide the unprecedented deep insights into the interaction between electronic and nuclear dynamics of the DBS, challenging the most sophisticated theoretical calculations.
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Affiliation(s)
- Do Hyung Kang
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Sejun An
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
| | - Sang Kyu Kim
- Department of Chemistry, KAIST, Daejeon 34141, Republic of Korea
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30
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Anstöter CS, Curchod BFE, Verlet JRR. Geometric and electronic structure probed along the isomerisation coordinate of a photoactive yellow protein chromophore. Nat Commun 2020; 11:2827. [PMID: 32499507 PMCID: PMC7272410 DOI: 10.1038/s41467-020-16667-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Accepted: 05/15/2020] [Indexed: 01/29/2023] Open
Abstract
Understanding the connection between the motion of the nuclei in a molecule and the rearrangement of its electrons lies at the heart of chemistry. While many experimental methods have been developed to probe either the electronic or the nuclear structure on the timescale of atomic motion, very few have been able to capture both these changes in concert. Here, we use time-resolved photoelectron imaging to probe the isomerisation coordinate on the excited state of an isolated model chromophore anion of the photoactive yellow protein. By probing both the electronic structure changes as well as nuclear dynamics, we are able to uniquely measure isomerisation about a specific bond. Our results demonstrate that the photoelectron signal dispersed in time, energy and angle combined with calculations can track the evolution of both electronic and geometric structure along the adiabatic state, which in turn defines that chemical transformation. Resolving concerted nuclear and electronic motion in real-time is a primary goal in chemistry. The authors monitor nuclear and valence electronic dynamics in the excited state single-bond isomerisation of a chromophore of photoactive yellow protein, using time-resolved photoelectron imaging and electronic structure calculations.
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Affiliation(s)
- Cate S Anstöter
- Department of Chemistry, Durham University, Durham, DH1 3LE, UK
| | | | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham, DH1 3LE, UK.
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31
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Anstöter CS, Mensa-Bonsu G, Nag P, Ranković M, Kumar T P R, Boichenko AN, Bochenkova AV, Fedor J, Verlet JRR. Mode-Specific Vibrational Autodetachment Following Excitation of Electronic Resonances by Electrons and Photons. PHYSICAL REVIEW LETTERS 2020; 124:203401. [PMID: 32501066 DOI: 10.1103/physrevlett.124.203401] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Accepted: 05/01/2020] [Indexed: 06/11/2023]
Abstract
Electronic resonances commonly decay via internal conversion to vibrationally hot anions and subsequent statistical electron emission. We observed vibrational structure in such an emission from the nitrobenzene anion, in both the 2D electron energy loss and 2D photoelectron spectroscopy of the neutral and anion, respectively. The emission peaks could be correlated with calculated nonadiabatic coupling elements for vibrational modes to the electronic continuum from a nonvalence dipole-bound state. This autodetachment mechanism via a dipole-bound state is likely to be a common feature in both electron and photoelectron spectroscopies.
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Affiliation(s)
- Cate S Anstöter
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Golda Mensa-Bonsu
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Pamir Nag
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic
| | - Miloš Ranković
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic
| | - Ragesh Kumar T P
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic
| | - Anton N Boichenko
- Department of Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia
| | | | - Juraj Fedor
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
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32
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Verlet JRR, Anstöter CS, Bull JN, Rogers JP. Role of Nonvalence States in the Ultrafast Dynamics of Isolated Anions. J Phys Chem A 2020; 124:3507-3519. [PMID: 32233436 PMCID: PMC7212518 DOI: 10.1021/acs.jpca.0c01260] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
Nonvalence states
of neutral molecules (Rydberg states) play important
roles in nonadiabatic dynamics of excited states. In anions, such
nonadiabatic transitions between nonvalence and valence states have
been much less explored even though they are believed to play important
roles in electron capture and excited state dynamics of anions. The
aim of this Feature Article is to provide an overview of recent experimental
observations, based on time-resolved photoelectron imaging, of valence
to nonvalence and nonvalence to valence transitions in anions and
to demonstrate that such dynamics may be commonplace in the excited
state dynamics of molecular anions and cluster anions.
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Affiliation(s)
- Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - Cate S Anstöter
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
| | - James N Bull
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, United Kingdom
| | - Joshua P Rogers
- Department of Chemistry, Durham University, Durham DH1 3LE, United Kingdom
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33
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Bull JN, Anstöter CS, Verlet JRR. Fingerprinting the Excited-State Dynamics in Methyl Ester and Methyl Ether Anions of Deprotonated para-Coumaric Acid. J Phys Chem A 2020; 124:2140-2151. [PMID: 32105474 DOI: 10.1021/acs.jpca.9b11993] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Chromophores based on the para-hydroxycinnamate moiety are widespread in the natural world, including as the photoswitching unit in photoactive yellow protein and as a sunscreen in the leaves of plants. Here, photodetachment action spectroscopy combined with frequency- and angle-resolved photoelectron imaging is used to fingerprint the excited-state dynamics over the first three bright action-absorption bands in the methyl ester anions (pCEs-) of deprotonated para-coumaric acid at a temperature of ∼300 K. The excited states associated with the action-absorption bands are classified as resonances because they are situated in the detachment continuum and are open to autodetachment. The frequency-resolved photoelectron spectrum for pCEs- indicates that all photon energies over the S1(ππ*) band lead to similar vibrational autodetachment dynamics. The S2(nπ*) band is Herzberg-Teller active and has comparable brightness to the higher lying 21(ππ*) band. The frequency-resolved photoelectron spectrum over the S2(nπ*) band indicates more efficient internal conversion to the S1(ππ*) state for photon energies resonant with the Franck-Condon modes (∼80%) compared with the Herzberg-Teller modes (∼60%). The third action-absorption band, which corresponds to excitation of the 21(ππ*) state, shows complex and photon energy-dependent dynamics, with 20-40% of photoexcited population internally converting to the S1(ππ*) state. There is also evidence for a mode-specific competition between prompt autodetachment and internal conversion on the red edge of the 21(ππ*) band. There is no evidence for recovery of the ground electronic state and statistical electron ejection (thermionic emission) following photoexcitation over any of the three action-absorption bands. The photoelectron spectra for the deprotonated methyl ether derivative (pCEt-) at photon energies over the S1(ππ*) and S2(nπ*) bands indicate diametrically opposed dynamics compared with pCEs-, namely, intense thermionic emission due to efficient recovery of the ground electronic state.
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Affiliation(s)
- James N Bull
- School of Chemistry, Norwich Research Park, University of East Anglia, Norwich NR4 7TJ, U.K
| | - Cate S Anstöter
- Department of Chemistry, Durham University, Durham DH1 3LE, U.K
| | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham DH1 3LE, U.K
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34
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Mustalahti S, Morozov D, Luk HL, Pallerla RR, Myllyperkiö P, Pettersson M, Pihko PM, Groenhof G. Photoactive Yellow Protein Chromophore Photoisomerizes around a Single Bond if the Double Bond Is Locked. J Phys Chem Lett 2020; 11:2177-2181. [PMID: 32109070 PMCID: PMC7145348 DOI: 10.1021/acs.jpclett.0c00060] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Accepted: 02/28/2020] [Indexed: 06/10/2023]
Abstract
Photoactivation in the Photoactive Yellow Protein, a bacterial blue-light photoreceptor, proceeds via photoisomerization of the double C═C bond in the covalently attached chromophore. Quantum chemistry calculations, however, have suggested that in addition to double-bond photoisomerization, the isolated chromophore and many of its analogues can isomerize around a single C-C bond as well. Whereas double-bond photoisomerization has been observed with X-ray crystallography, experimental evidence of single-bond photoisomerization is currently lacking. Therefore, we have synthesized a chromophore analogue, in which the formal double bond is covalently locked in a cyclopentenone ring, and carried out transient absorption spectroscopy experiments in combination with nonadiabatic molecular dynamics simulations to reveal that the locked chromophore isomerizes around the single bond upon photoactivation. Our work thus provides experimental evidence of single-bond photoisomerization in a photoactive yellow protein chromophore analogue and suggests that photoisomerization is not restricted to the double bonds in conjugated systems. This insight may be useful for designing light-driven molecular switches or motors.
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35
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Álvarez L, Costa F, Lozano AI, Oller JC, Muñoz A, Blanco F, Limão-Vieira P, White RD, Brunger MJ, García G. Electron scattering cross sections from nitrobenzene in the energy range 0.4-1000 eV: the role of dipole interactions in measurements and calculations. Phys Chem Chem Phys 2020; 22:13505-13515. [PMID: 32530024 DOI: 10.1039/d0cp02039g] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Absolute total electron scattering cross sections (TCS) for nitrobenzene molecules with impact energies from 0.4 to 1000 eV have been measured by means of two different electron-transmission experimental arrangements. For the lower energies (0.4-250 eV) a magnetically confined electron beam system has been used, while for energies above 100 eV a linear beam transmission technique with high angular resolution allowed accurate measurements up to 1000 eV impact energy. In both cases random uncertainties were maintained below 5-8%. Systematic errors arising from the angular and energy resolution limits of each apparatus are analysed in detail and quantified with the help of our theoretical calculations. Differential elastic and integral elastic, excitation and ionisation as well as momentum transfer cross sections have been calculated, for the whole energy range considered here, by using an independent atom model in combination with the screening corrected additivity rule method including interference effects (IAM-SCARI). Due to the significant permanent dipole moment of nitrobenzene, additional differential and integral rotational excitation cross sections have been calculated in the framework of the Born approximation. If we ignore the rotational excitations, our calculated total cross section agrees well with our experimental results for impact energies above 15 eV. Additionally, they overlap at 10 eV with the low energy Schwinger Multichannel method with Pseudo Potentials (SMCPP) calculation available in the literature (L. S. Maioli and M. H. F. Bettega, J. Chem. Phys., 2017, 147, 164305). We find a broad feature in the experimental TCS at around 1.0 eV, which has been related to the formation of the NO2- anion and assigned to the π*(b1) resonance, according to previous mass spectra available in the literature. Other local maxima in the TCSs are found at 4.0 ± 0.2 and 5.0 ± 0.2 eV and are assigned to core excited resonances leading to the formation of the NO2- and O2- anions, respectively. Finally, for energies below 10 eV, differences found between the present measurements, the SMCPP calculation and our previous data for non-polar benzene have revealed the importance of accurately calculating the rotational excitation contribution to the TCS before comparing theoretical and experimental data. This comparison suggests that our dipole-Born calculation for nitrobenzene overestimates the magnitude of the rotational excitation cross sections below 10 eV.
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Affiliation(s)
- L Álvarez
- Instituto de Fisica Fundamental, CSIC, Serrano 113-Bis, E-28006 Madrid, Spain.
| | - F Costa
- Instituto de Fisica Fundamental, CSIC, Serrano 113-Bis, E-28006 Madrid, Spain.
| | - A I Lozano
- Instituto de Fisica Fundamental, CSIC, Serrano 113-Bis, E-28006 Madrid, Spain. and Atomic and Molecular Collisions Laboratory, CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - J C Oller
- Centro de Investigaciones Energéticas Medioambientales y Tecnológicas (CIEMAT), Avenida Complutense 22, 28040 Madrid, Spain
| | - A Muñoz
- Centro de Investigaciones Energéticas Medioambientales y Tecnológicas (CIEMAT), Avenida Complutense 22, 28040 Madrid, Spain
| | - F Blanco
- Departamento de Estructura de la Materia Física Térmica y Electrónica e IPARCOS, Universidad Complutense de Madrid, Plaza de Ciencias 1, 28040 Madrid, Spain
| | - P Limão-Vieira
- Atomic and Molecular Collisions Laboratory, CEFITEC, Department of Physics, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal
| | - R D White
- College of Science and Engineering, James Cook University, Townsville, Australia
| | - M J Brunger
- College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, SA 5001, Australia and Department of Actuarial Science and Applied Statistics, Faculty of Business and Information Science UCSI, Kuala Lumpur 56000, Malaysia
| | - G García
- Instituto de Fisica Fundamental, CSIC, Serrano 113-Bis, E-28006 Madrid, Spain. and Centre for Medical Radiation Physics, University of Wollongong, NSW, Australia
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