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Cai G, Ge Y, Dong Z, Liao Y, Chen Y, Wu A, Li Y, Liu H, Yuan G, Deng J, Fu H, Jeppesen E. Temporal shifts in the phytoplankton network in a large eutrophic shallow freshwater lake subjected to major environmental changes due to human interventions. WATER RESEARCH 2024; 261:122054. [PMID: 38986279 DOI: 10.1016/j.watres.2024.122054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 07/02/2024] [Accepted: 07/04/2024] [Indexed: 07/12/2024]
Abstract
Phytoplankton communities are crucial components of aquatic ecosystems, and since they are highly interactive, they always form complex networks. Yet, our understanding of how interactive phytoplankton networks vary through time under changing environmental conditions is limited. Using a 29-year (339 months) long-term dataset on Lake Taihu, China, we constructed a temporal network comprising monthly sub-networks using "extended Local Similarity Analysis" and assessed how eutrophication, climate change, and restoration efforts influenced the temporal dynamics of network complexity and stability. The network architecture of phytoplankton showed strong dynamic changes with varying environments. Our results revealed cascading effects of eutrophication and climate change on phytoplankton network stability via changes in network complexity. The network stability of phytoplankton increased with average degree, modularity, and nestedness and decreased with connectance. Eutrophication (increasing nitrogen) stabilized the phytoplankton network, mainly by increasing its average degree, while climate change, i.e., warming and decreasing wind speed enhanced its stability by increasing the cohesion of phytoplankton communities directly and by decreasing the connectance of network indirectly. A remarkable shift and a major decrease in the temporal dynamics of phytoplankton network complexity (average degree, nestedness) and stability (robustness, persistence) were detected after 2007 when numerous eutrophication mitigation efforts (not all successful) were implemented, leading to simplified phytoplankton networks and reduced stability. Our findings provide new insights into the organization of phytoplankton networks under eutrophication (or re-oligotrophication) and climate change in subtropical shallow lakes.
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Affiliation(s)
- Guojun Cai
- Ecology Department, College of Environments & Ecology, Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, Hunan Agricultural University, Changsha 410128, China; Institute of Mountain Resources, Guizhou Academy of Science, Guiyang 550001, China
| | - Yili Ge
- Ecology Department, College of Environments & Ecology, Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, Hunan Agricultural University, Changsha 410128, China
| | - Zheng Dong
- Ecology Department, College of Environments & Ecology, Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, Hunan Agricultural University, Changsha 410128, China
| | - Yu Liao
- Ecology Department, College of Environments & Ecology, Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, Hunan Agricultural University, Changsha 410128, China
| | - Yaoqi Chen
- Ecology Department, College of Environments & Ecology, Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, Hunan Agricultural University, Changsha 410128, China
| | - Aiping Wu
- Ecology Department, College of Environments & Ecology, Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, Hunan Agricultural University, Changsha 410128, China
| | - Youzhi Li
- Ecology Department, College of Environments & Ecology, Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, Hunan Agricultural University, Changsha 410128, China
| | - Huanyao Liu
- Ecology Department, College of Environments & Ecology, Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, Hunan Agricultural University, Changsha 410128, China
| | - Guixiang Yuan
- Ecology Department, College of Environments & Ecology, Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, Hunan Agricultural University, Changsha 410128, China
| | - Jianming Deng
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China.
| | - Hui Fu
- Ecology Department, College of Environments & Ecology, Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, Hunan Agricultural University, Changsha 410128, China.
| | - Erik Jeppesen
- Department of Ecoscience and Centre for Water Technology (WATEC), Aarhus University, Vejlsøvej 25, Silkeborg 8600, Denmark; Sino-Danish Centre for Education and Research (SDC), University of Chinese Academy of Sciences, Beijing, China; imnology Laboratory, Department of Biological Sciences and Centre for Ecosystem Research and Implementation, Middle East Technical University, Ankara, Turkey; Institute of Marine Sciences, Middle East Technical University, Erdemli-Mersin 33731, Turkey; Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming, China
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2
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Mougi A. Ecosystem engineering and food web stability. Sci Rep 2024; 14:19400. [PMID: 39169231 PMCID: PMC11339392 DOI: 10.1038/s41598-024-70626-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Accepted: 08/19/2024] [Indexed: 08/23/2024] Open
Abstract
Ecosystem engineering, which involves organism-triggered physical modification of the environment, is a widespread phenomenon. Despite this, the role of engineering in ecological communities remains poorly understood. This study employs a food web model to uncover the key roles of ecosystem engineering in maintaining food webs. While engineers facilitating population growth and suppressing consumers' foraging activity can help maintain complex communities with diverse species, engineering effects that suppress population growth and facilitate consumers' foraging activity can largely destabilize community dynamics. Furthermore, in the middle levels of engineering-related species within a community, an increase in species richness can increase community stability, contrary to classical ecological prediction. The study findings suggest that ecosystem engineering can explain biodiversity persistence in nature, but it depends on the proportion of engineering-related species and how engineering affects organisms.
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Affiliation(s)
- Akihiko Mougi
- Institute of Agricultural and Life Sciences, Academic Assembly, Shimane University, 1060 Nishikawatsu-cho, Matsue, 690-8504, Japan.
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3
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Deng T, He Z, Xu M, Dong M, Guo J, Sun G, Huang H. Species' functional traits and interactions drive nitrate-mediated sulfur-oxidizing community structure and functioning. mBio 2023; 14:e0156723. [PMID: 37702500 PMCID: PMC10653917 DOI: 10.1128/mbio.01567-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 07/18/2023] [Indexed: 09/14/2023] Open
Abstract
IMPORTANCE Understanding the processes and mechanisms governing microbial community assembly and their linkages to ecosystem functioning has long been a core issue in microbial ecology. An in-depth insight still requires combining with analyses of species' functional traits and microbial interactions. Our study showed how species' functional traits and interactions determined microbial community structure and functions by a well-controlled laboratory experiment with nitrate-mediated sulfur oxidation systems using high-throughput sequencing and culture-dependent technologies. The results provided solid evidences that species' functional traits and interactions were the intrinsic factors determining community structure and function. More importantly, our study established quantitative links between community structure and function based on species' functional traits and interactions, which would have important implications for the design and synthesis of microbiomes with expected functions.
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Affiliation(s)
- Tongchu Deng
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Science, Guangzhou, China
- Guangdong Provincial Key Laboratory of Environmental Protection Microbiology and Regional Ecological Security, Guangzhou, Guangdong, China
| | - Zhili He
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, China
| | - Meiying Xu
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Science, Guangzhou, China
- Guangdong Provincial Key Laboratory of Environmental Protection Microbiology and Regional Ecological Security, Guangzhou, Guangdong, China
| | - Meijun Dong
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Science, Guangzhou, China
- Guangdong Provincial Key Laboratory of Environmental Protection Microbiology and Regional Ecological Security, Guangzhou, Guangdong, China
| | - Jun Guo
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Science, Guangzhou, China
- Guangdong Provincial Key Laboratory of Environmental Protection Microbiology and Regional Ecological Security, Guangzhou, Guangdong, China
| | - Guoping Sun
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Science, Guangzhou, China
- Guangdong Provincial Key Laboratory of Environmental Protection Microbiology and Regional Ecological Security, Guangzhou, Guangdong, China
| | - Haobin Huang
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Science, Guangzhou, China
- Guangdong Provincial Key Laboratory of Environmental Protection Microbiology and Regional Ecological Security, Guangzhou, Guangdong, China
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4
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Bertagnolli AD, Maritan AJ, Tumolo BB, Fritz SF, Oakland HC, Mohr EJ, Poole GC, Albertson LK, Stewart FJ. Net-spinning caddisflies create denitrifier-enriched niches in the stream microbiome. ISME COMMUNICATIONS 2023; 3:111. [PMID: 37848489 PMCID: PMC10582121 DOI: 10.1038/s43705-023-00315-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 09/20/2023] [Accepted: 09/26/2023] [Indexed: 10/19/2023]
Abstract
Larval net-spinning caddisflies (Hydropsychidae) function as ecosystem engineers in streams where they construct protective retreats composed of organic and inorganic material affixed with silk filtration nets that alter streambed hydrology. We hypothesized that hydropsychid bio-structures (retreats, nets) are microhabitats for microbes with oxygen-sensitive metabolisms, and therefore increase the metabolic heterogeneity of streambed microbial assemblages. Metagenomic and 16 S rRNA gene amplicon analysis of samples from a montane stream (Cherry Creek, Montana, USA) revealed that microbiomes of caddisfly bio-structures are taxonomically and functionally distinct from those of the immediately adjacent rock biofilm (~2 cm distant) and enriched in microbial taxa with established roles in denitrification, nitrification, and methane production. Genes for denitrification, high oxygen affinity terminal oxidases, hydrogenases, oxidative dissimilatory sulfite reductases, and complete ammonia oxidation are significantly enriched in caddisfly bio-structures. The results suggest a novel ecosystem engineering effect of caddisflies through the creation of low-oxygen, denitrifier-enriched niches in the stream microbiome. Facilitation of metabolic diversity in streambeds may be a largely unrecognized mechanism by which caddisflies alter whole-stream biogeochemistry.
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Affiliation(s)
- Anthony D Bertagnolli
- Department of Microbiology & Cell Biology, Montana State University, Bozeman, MT, 59717, USA.
| | - Andrew J Maritan
- Department of Microbiology & Cell Biology, Montana State University, Bozeman, MT, 59717, USA
| | - Benjamin B Tumolo
- Department of Ecology, Montana State University, Bozeman, MT, 59717, USA
| | - Samuel F Fritz
- Department of Ecology, Montana State University, Bozeman, MT, 59717, USA
| | - Hayley C Oakland
- Department of Land Resources and Environmental Sciences, Montana State University, Bozeman, MT, 59717, USA
| | - Elizabeth J Mohr
- Department of Land Resources and Environmental Sciences, Montana State University, Bozeman, MT, 59717, USA
| | - Geoffrey C Poole
- Department of Land Resources and Environmental Sciences, Montana State University, Bozeman, MT, 59717, USA
- Montana Institute on Ecosystems, Montana State University, Bozeman, MT, 59717, USA
| | | | - Frank J Stewart
- Department of Microbiology & Cell Biology, Montana State University, Bozeman, MT, 59717, USA
- Center for Microbial Dynamics and Infection, School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
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5
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Koshkina A, Freitag M, Grigoryeva I, Hölzel N, Stirnemann I, Velbert F, Kamp J. Post‐Soviet
fire and grazing regimes govern the abundance of a key ecosystem engineer on the Eurasian steppe, the yellow ground squirrel
Spermophilus fulvus. DIVERS DISTRIB 2022. [DOI: 10.1111/ddi.13668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Affiliation(s)
- Alyona Koshkina
- Institute of Landscape Ecology University of Münster Münster Germany
- Association for the Conservation of Biodiversity of Kazakhstan (ACBK) Astana Kazakhstan
| | - Martin Freitag
- Institute of Landscape Ecology University of Münster Münster Germany
- Federal Agency for Nature Conservation Bonn Germany
| | - Irina Grigoryeva
- Association for the Conservation of Biodiversity of Kazakhstan (ACBK) Astana Kazakhstan
- Karaganda State University named of E.A. Buketov Karaganda Kazakhstan
| | - Norbert Hölzel
- Institute of Landscape Ecology University of Münster Münster Germany
| | - Ingrid Stirnemann
- Institute of Landscape Ecology University of Münster Münster Germany
| | - Frederike Velbert
- Institute of Landscape Ecology University of Münster Münster Germany
| | - Johannes Kamp
- Department of Conservation Biology University of Göttingen Göttingen Germany
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6
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Zhao ST, Johnson-Bice SM, Roth JD. Foxes engineer hotspots of wildlife activity on the nutrient-limited Arctic tundra. Glob Ecol Conserv 2022. [DOI: 10.1016/j.gecco.2022.e02310] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
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7
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Blanchard G, Munoz F. Revisiting extinction debt through the lens of multitrophic networks and meta‐ecosystems. OIKOS 2022. [DOI: 10.1111/oik.09435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Grégoire Blanchard
- AMAP, Univ. Montpellier, CIRAD, CNRS, INRAE, IRD Montpellier France
- AMAP, IRD, Herbier de Nouvelle Calédonie Nouméa Nouvelle Calédonie
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8
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Ran Y, Wu S, Chen C, Sun X, Huang P, Ma M, Yi X. Shift from soil chemical to physical filters in assembling riparian floristic communities along a flooding stress gradient. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 844:157116. [PMID: 35787904 DOI: 10.1016/j.scitotenv.2022.157116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 06/10/2022] [Accepted: 06/28/2022] [Indexed: 06/15/2023]
Abstract
Understanding community assembly is a key issue in recognizing community succession and guiding the restoration of degraded ecosystems. Based on the stress-dominance hypothesis (SDH), along a gradient of increasing environmental stress, the relative importance of environmental filtering is supposed to be dominant but species interaction could be a minor process in assembling communities. However, this hypothesized model of the assembly-rule shift was equivocally supported by various studies. In this study, by examining riparian plant communities with the zonation distribution of species composition along a markedly contrast flooding-stress gradient, a general aim was to clarify whether assembly rules of the communities would be also sorted into the zonation pattern as expected by the SDH. Another aim was to identify how edaphic factors associate with the assembly processes. Firstly, we found that even under the distinct stress gradient, community assembly was not stratified into different rules as the SDH expected, but environmental filtering appeared as a dominant assembly process across the stress gradient. Secondly, although filtering holds as a dominant assembly rule, environmental filters were found different along the gradient. By disentangling the filters of edaphic attributes, we found that the filters significantly shifted from soil physical properties to chemical nutrients governing the filtering process along the gradient. This result revealed that, across the contrast gradient, the environmental deterministic process on assembly is so strong that the other assembly processes became weaker. By synthesizing our results, the SDH may not be applied even under the context of a contrast stress gradient, which suggests that environmental context may be a key in testing and applying the SDH. Finally, in guiding riparian restoration under strong stress, we suggest that soil physical structure rather than chemical nutrients shall be given a priority for consideration in rebuilding the degraded riparian communities.
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Affiliation(s)
- Yiguo Ran
- Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shengjun Wu
- Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China
| | - Chundi Chen
- College of Architecture and Urban Planning, Tongji University, Shanghai 200092, China
| | - Xiaoxiang Sun
- Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ping Huang
- Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China
| | - Maohua Ma
- Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China.
| | - Xuemei Yi
- Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing 400714, China.
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9
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Sharp thresholds limit the benefit of defector avoidance in cooperation on networks. Proc Natl Acad Sci U S A 2022; 119:e2120120119. [PMID: 35939706 PMCID: PMC9388082 DOI: 10.1073/pnas.2120120119] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Consider a cooperation game on a spatial network of habitat patches, where players can relocate between patches if they judge the local conditions to be unfavorable. In time, the relocation events may lead to a homogeneous state where all patches harbor the same relative densities of cooperators and defectors, or they may lead to self-organized patterns, where some patches become safe havens that maintain an elevated cooperator density. Here we analyze the transition between these states mathematically. We show that safe havens form once a certain threshold in connectivity is crossed. This threshold can be analytically linked to the structure of the patch network and specifically to certain network motifs. Surprisingly, a forgiving defector avoidance strategy may be most favorable for cooperators. Our results demonstrate that the analysis of cooperation games in ecological metacommunity models is mathematically tractable and has the potential to link topics such as macroecological patterns, behavioral evolution, and network topology.
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10
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Wood SLR, Martins KT, Dumais-Lalonde V, Tanguy O, Maure F, St-Denis A, Rayfield B, Martin AE, Gonzalez A. Missing Interactions: The Current State of Multispecies Connectivity Analysis. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.830822] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Designing effective habitat and protected area networks, which sustain species-rich communities is a critical conservation challenge. Recent decades have witnessed the emergence of new computational methods for analyzing and prioritizing the connectivity needs of multiple species. We argue that the goal of prioritizing habitat for multispecies connectivity should be focused on long-term persistence of a set of species in a landscape or seascape. Here we present a review of the literature based on 77 papers published between 2010 and 2020, in which we assess the current state and recent advances in multispecies connectivity analysis in terrestrial ecosystems. We summarize the four most employed analytical methods, compare their data requirements, and provide an overview of studies comparing results from multiple methods. We explicitly look at approaches for integrating multiple species considerations into reserve design and identify novel approaches being developed to overcome computational and theoretical challenges posed by multispecies connectivity analyses. There is a lack of common metrics for multispecies connectivity. We suggest the index of metapopulation capacity as one metric by which to assess and compare the effectiveness of proposed network designs. We conclude that, while advances have been made over the past decade, the field remains nascent by its ability to integrate multiple species interactions into analytical approaches to connectivity. Furthermore, the field is hampered its ability to provide robust connectivity assessments for lack of a clear definition and goal for multispecies connectivity conservation.
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11
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Crausbay SD, Sofaer HR, Cravens AE, Chaffin BC, Clifford KR, Gross JE, Knapp CN, Lawrence DJ, Magness DR, Miller-Rushing AJ, Schuurman GW, Stevens-Rumann CS. A Science Agenda to Inform Natural Resource Management Decisions in an Era of Ecological Transformation. Bioscience 2021. [DOI: 10.1093/biosci/biab102] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Earth is experiencing widespread ecological transformation in terrestrial, freshwater, and marine ecosystems that is attributable to directional environmental changes, especially intensifying climate change. To better steward ecosystems facing unprecedented and lasting change, a new management paradigm is forming, supported by a decision-oriented framework that presents three distinct management choices: resist, accept, or direct the ecological trajectory. To make these choices strategically, managers seek to understand the nature of the transformation that could occur if change is accepted while identifying opportunities to intervene to resist or direct change. In this article, we seek to inspire a research agenda for transformation science that is focused on ecological and social science and based on five central questions that align with the resist–accept–direct (RAD) framework. Development of transformation science is needed to apply the RAD framework and support natural resource management and conservation on our rapidly changing planet.
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Affiliation(s)
- Shelley D Crausbay
- Conservation Science Partners, Fort Collins, Colorado, and is a consortium partner for the US Geological Survey's North Central Climate Adaptation Science Center, Boulder, Colorado, United States
| | - Helen R Sofaer
- US Geological Survey Pacific Island Ecosystems Research Center, Hawaii Volcanoes National Park, Hawai'i, United States
| | - Amanda E Cravens
- US Geological Survey's Social and Economic Analysis Branch, Fort Collins, Colorado, United States
| | | | - Katherine R Clifford
- US Geological Survey's Social and Economic Analysis Branch, Fort Collins, Colorado, United States
| | - John E Gross
- US National Park Service Climate Change Response Program, Fort Collins, Colorado, United States
| | | | - David J Lawrence
- US National Park Service Climate Change Response Program, Fort Collins, Colorado, United States
| | - Dawn R Magness
- US Fish and Wildlife Service, Kenai National Wildlife Refuge, Soldotna, Alaska, United States
| | | | - Gregor W Schuurman
- US National Park Service Climate Change Response Program, in Fort Collins, Colorado, United States
| | - Camille S Stevens-Rumann
- Forest and Rangeland Stewardship Department and assistant director of the Colorado Forest Restoration Institute, at Colorado State University, Fort Collins, Colorado, United States
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12
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Yang F, Liu B, Zhu Y, Wyckhuys KAG, van der Werf W, Lu Y. Species diversity and food web structure jointly shape natural biological control in agricultural landscapes. Commun Biol 2021; 4:979. [PMID: 34408250 PMCID: PMC8373963 DOI: 10.1038/s42003-021-02509-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Accepted: 08/01/2021] [Indexed: 01/01/2023] Open
Abstract
Land-use change and agricultural intensification concurrently impact natural enemy (e.g., parasitoid) communities and their associated ecosystem services (ESs), i.e., biological pest control. However, the extent to which (on-farm) parasitoid diversity and food webs mediate landscape-level influences on biological control remains poorly understood. Here, drawing upon a 3-year study of quantitative parasitoid-hyperparasitoid trophic networks from 25 different agro-landscapes, we assess the cascading effects of landscape composition, species diversity and trophic network structure on ecosystem functionality (i.e., parasitism, hyperparasitism). Path analysis further reveals cascaded effects leading to biological control of a resident crop pest, i.e., Aphis gossypii. Functionality is dictated by (hyper)parasitoid diversity, with its effects modulated by food web generality and vulnerability. Non-crop habitat cover directly benefits biological control, whereas secondary crop cover indirectly lowers hyperparasitism. Our work underscores a need to simultaneously account for on-farm biodiversity and trophic interactions when investigating ESs within dynamic agro-landscapes.
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Affiliation(s)
- Fan Yang
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Bing Liu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Yulin Zhu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Kris A G Wyckhuys
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
- University of Queensland, Brisbane, Queensland, Australia
| | - Wopke van der Werf
- Centre for Crop Systems Analysis, Wageningen University and Research, Wageningen, The Netherlands
| | - Yanhui Lu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China.
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13
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Martínez‐Núñez C, Rey PJ. Hybrid networks reveal contrasting effects of agricultural intensification on antagonistic and mutualistic motifs. Funct Ecol 2021. [DOI: 10.1111/1365-2435.13800] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Carlos Martínez‐Núñez
- Dept. Biología Animal, Biología Vegetal y Ecología Universidad de Jaén Jaén Spain
- Instituto Interuniversitario del Sistema Tierra de Andalucía Universidad de Jaén Jaén Spain
| | - Pedro J. Rey
- Dept. Biología Animal, Biología Vegetal y Ecología Universidad de Jaén Jaén Spain
- Instituto Interuniversitario del Sistema Tierra de Andalucía Universidad de Jaén Jaén Spain
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14
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Dubey M, Hadadi N, Pelet S, Carraro N, Johnson DR, van der Meer JR. Environmental connectivity controls diversity in soil microbial communities. Commun Biol 2021; 4:492. [PMID: 33888858 PMCID: PMC8062517 DOI: 10.1038/s42003-021-02023-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Accepted: 03/24/2021] [Indexed: 01/03/2023] Open
Abstract
Interspecific interactions are thought to govern the stability and functioning of microbial communities, but the influence of the spatial environment and its structural connectivity on the potential of such interactions to unfold remain largely unknown. Here we studied the effects on community growth and microbial diversity as a function of environmental connectivity, where we define environmental connectivity as the degree of habitat fragmentation preventing microbial cells from living together. We quantitatively compared growth of a naturally-derived high microbial diversity community from soil in a completely mixed liquid suspension (high connectivity) to growth in a massively fragmented and poorly connected environment (low connectivity). The low connectivity environment consisted of homogenously-sized miniature agarose beads containing random single or paired founder cells. We found that overall community growth was the same in both environments, but the low connectivity environment dramatically reduced global community-level diversity compared to the high connectivity environment. Experimental observations were supported by community growth modeling. The model predicts a loss of diversity in the low connectivity environment as a result of negative interspecific interactions becoming more dominant at small founder species numbers. Counterintuitively for the low connectivity environment, growth of isolated single genotypes was less productive than that of random founder genotype cell pairs, suggesting that the community as a whole profited from emerging positive interspecific interactions. Our work demonstrates the importance of environmental connectivity for growth of natural soil microbial communities, which aids future efforts to intervene in or restore community composition to achieve engineering and biotechnological objectives. Manupriyam Dubey et al. use experimental systems with naturally derived soil microbiomes in liquid suspensions and encapsulated beads to compare community dynamics in well-connected and poorly connected environments. While their results show that microbial growth does not vary between conditions, they report that low connectivity led to reduced microbial diversity and suggest that these reductions in microbial diversity may be due to increased negative interspecific interactions.
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Affiliation(s)
- Manupriyam Dubey
- Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland
| | - Noushin Hadadi
- Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland
| | - Serge Pelet
- Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland
| | - Nicolas Carraro
- Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland
| | - David R Johnson
- Department of Environmental Microbiology, Swiss Federal Institute of Aquatic Science and Technology, Eawag, Dübendorf, Switzerland
| | - Jan R van der Meer
- Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland.
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15
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Ross SRP, Suzuki Y, Kondoh M, Suzuki K, Villa Martín P, Dornelas M. Illuminating the intrinsic and extrinsic drivers of ecological stability across scales. Ecol Res 2021. [DOI: 10.1111/1440-1703.12214] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Samuel R. P.‐J. Ross
- Department of Zoology, School of Natural Sciences Trinity College Dublin Dublin Ireland
| | - Yuka Suzuki
- Biodiversity and Biocomplexity Unit Okinawa Institute of Science and Technology Graduate University Okinawa Japan
| | - Michio Kondoh
- Graduate School of Life Sciences Tohoku University Sendai Japan
| | - Kenta Suzuki
- Integrated Bioresource Information Division RIKEN BioResource Research Center Ibaraki Japan
| | - Paula Villa Martín
- Biological Complexity Unit Okinawa Institute of Science and Technology Graduate University Okinawa Japan
| | - Maria Dornelas
- Centre for Biological Diversity University of St Andrews St Andrews UK
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16
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Guimarães PR. The Structure of Ecological Networks Across Levels of Organization. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2020. [DOI: 10.1146/annurev-ecolsys-012220-120819] [Citation(s) in RCA: 68] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Interactions connect the units of ecological systems, forming networks. Individual-based networks characterize variation in niches among individuals within populations. These individual-based networks merge with each other, forming species-based networks and food webs that describe the architecture of ecological communities. Networks at broader spatiotemporal scales portray the structure of ecological interactions across landscapes and over macroevolutionary time. Here, I review the patterns observed in ecological networks across multiple levels of biological organization. A fundamental challenge is to understand the amount of interdependence as we move from individual-based networks to species-based networks and beyond. Despite the uneven distribution of studies, regularities in network structure emerge across scales due to the fundamental architectural patterns shared by complex networks and the interplay between traits and numerical effects. I illustrate the integration of these organizational scales by exploring the consequences of the emergence of highly connected species for network structures across scales.
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Affiliation(s)
- Paulo R. Guimarães
- Departamento de Ecologia, Instituto de Biociências, Universidade de São Paulo, São Paulo, 05508-090, Brazil
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