1
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Cherayil BJ. Barrier crossing in a viscoelastic medium under active noise: Predictions of Kramers' flux-over-population method. J Chem Phys 2024; 161:014902. [PMID: 38949584 DOI: 10.1063/5.0212289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Accepted: 06/11/2024] [Indexed: 07/02/2024] Open
Abstract
The biochemical activity inside a cell has recently been suggested to act as a source of hydrodynamic fluctuations that can speed up or slow down enzyme catalysis [Tripathi et al., Commun. Phys. 5, 101 (2022).] The idea has been tested against and largely corroborated by simulations of activated barrier crossing in a simple fluid in the presence of thermal and athermal noise. The present paper attempts a wholly analytic solution to the same noise-driven barrier crossing problem but generalizes it to include viscoelastic memory effects of the kind likely to be present in cellular interiors. A calculation of the model's barrier crossing rate, using Kramers' flux-over-population formalism, reveals that in relation to the case where athermal noise is absent, athermal noise always accelerates barrier crossing, though the extent of enhancement depends on the duration τ0 over which the noise acts. More importantly, there exists a critical τ0-determined by the properties of the medium-at which Kramers' theory breaks down and, on approach to which, the rate grows significantly. The possibility of such a giant enhancement is potentially open to experimental validation using optically trapped nanoparticles in viscoelastic media that are acted on by externally imposed colored noise.
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Affiliation(s)
- Binny J Cherayil
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, Karnataka, India
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2
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Wiśniewski M, Spiechowicz J. Memory-induced absolute negative mobility. CHAOS (WOODBURY, N.Y.) 2024; 34:073101. [PMID: 38949530 DOI: 10.1063/5.0213706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Accepted: 06/10/2024] [Indexed: 07/02/2024]
Abstract
Non-Markovian systems form a broad area of physics that remains greatly unexplored despite years of intensive investigations. The spotlight is on memory as a source of effects that are absent in their Markovian counterparts. In this work, we dive into this problem and analyze a driven Brownian particle moving in a spatially periodic potential and exposed to correlated thermal noise. We show that the absolute negative mobility effect, in which the net movement of the particle is in the direction opposite to the average force acting on it, may be induced by the memory of the setup. To explain the origin of this phenomenon, we resort to the recently developed effective mass approach to dynamics of non-Markovian systems.
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Affiliation(s)
- M Wiśniewski
- Institute of Physics, University of Silesia, 41-500 Chorzów, Poland
| | - J Spiechowicz
- Institute of Physics, University of Silesia, 41-500 Chorzów, Poland
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3
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Wiśniewski M, Łuczka J, Spiechowicz J. Memory Corrections to Markovian Langevin Dynamics. ENTROPY (BASEL, SWITZERLAND) 2024; 26:425. [PMID: 38785674 PMCID: PMC11120160 DOI: 10.3390/e26050425] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Revised: 05/10/2024] [Accepted: 05/14/2024] [Indexed: 05/25/2024]
Abstract
Analysis of non-Markovian systems and memory-induced phenomena poses an everlasting challenge in the realm of physics. As a paradigmatic example, we consider a classical Brownian particle of mass M subjected to an external force and exposed to correlated thermal fluctuations. We show that the recently developed approach to this system, in which its non-Markovian dynamics given by the Generalized Langevin Equation is approximated by its memoryless counterpart but with the effective particle mass M∗
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4
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Pollak E. A personal perspective of the present status and future challenges facing thermal reaction rate theory. J Chem Phys 2024; 160:150902. [PMID: 38639316 DOI: 10.1063/5.0199557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Accepted: 03/06/2024] [Indexed: 04/20/2024] Open
Abstract
Reaction rate theory has been at the center of physical chemistry for well over one hundred years. The evolution of the theory is not only of historical interest. Reliable and accurate computation of reaction rates remains a challenge to this very day, especially in view of the development of quantum chemistry methods, which predict the relevant force fields. It is still not possible to compute the numerically exact rate on the fly when the system has more than at most a few dozen anharmonic degrees of freedom, so one must consider various approximate methods, not only from the practical point of view of constructing numerical algorithms but also on conceptual and formal levels. In this Perspective, I present some of the recent analytical results concerning leading order terms in an ℏ2m series expansion of the exact rate and their implications on various approximate theories. A second aspect has to do with the crossover temperature between tunneling and thermal activation. Using a uniform semiclassical transmission probability rather than the "primitive" semiclassical theory leads to the conclusion that there is no divergence problem associated with a "crossover temperature." If one defines a semiclassical crossover temperature as the point at which the tunneling energy of the instanton equals the barrier height, then it is a factor of two higher than its previous estimate based on the "primitive" semiclassical approximation. In the low temperature tunneling regime, the uniform semiclassical theory as well as the "primitive" semiclassical theory were based on the classical Euclidean action of a periodic orbit on the inverted potential. The uniform semiclassical theory wrongly predicts that the "half-point," which is the energy at which the transmission probability equals 1/2, for any barrier potential, is always the barrier energy. We describe here how augmenting the Euclidean action with constant terms of order ℏ2 can significantly improve the accuracy of the semiclassical theory and correct this deficiency. This also leads to a deep connection with and improvement of vibrational perturbation theory. The uniform semiclassical theory also enables an extension of the quantum version of Kramers' turnover theory to temperatures below the "crossover temperature." The implications of these recent advances on various approximate methods used to date are discussed at length, leading to the conclusion that reaction rate theory will continue to challenge us both on conceptual and practical levels for years to come.
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Affiliation(s)
- Eli Pollak
- Chemical and Biological Physics Department, Weizmann Institute of Science, 76100 Rehovoth, Israel
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5
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Wiśniewski M, Łuczka J, Spiechowicz J. Effective mass approach to memory in non-Markovian systems. Phys Rev E 2024; 109:044116. [PMID: 38755811 DOI: 10.1103/physreve.109.044116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Accepted: 03/14/2024] [Indexed: 05/18/2024]
Abstract
Recent pioneering experiments on non-Markovian dynamics done, e.g., for active matter have demonstrated that our theoretical understanding of this challenging yet hot topic is rather incomplete and there is a wealth of phenomena still awaiting discovery. It is related to the fact that typically for simplification the Markovian approximation is employed and as a consequence the memory is neglected. Therefore, methods allowing to study memory effects are extremely valuable. We demonstrate that a non-Markovian system described by the Generalized Langevin Equation (GLE) for a Brownian particle of mass M can be approximated by the memoryless Langevin equation in which the memory effects are correctly reproduced solely via the effective mass M^{*} of the Brownian particle which is determined only by the form of the memory kernel. Our work lays the foundation for an impactful approach which allows one to readily study memory-related corrections to Markovian dynamics.
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Affiliation(s)
- M Wiśniewski
- Institute of Physics, University of Silesia, 41-500 Chorzów, Poland
| | - J Łuczka
- Institute of Physics, University of Silesia, 41-500 Chorzów, Poland
| | - J Spiechowicz
- Institute of Physics, University of Silesia, 41-500 Chorzów, Poland
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6
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Kumar V, Pal A, Shpielberg O. Arrhenius law for interacting diffusive systems. Phys Rev E 2024; 109:L032101. [PMID: 38632768 DOI: 10.1103/physreve.109.l032101] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 02/08/2024] [Indexed: 04/19/2024]
Abstract
Finding the mean time it takes for a particle to escape from a metastable state due to thermal fluctuations is a fundamental problem in physics, chemistry, and biology. Here, we consider the escape rate of interacting diffusive particles, from a deep potential trap within the framework of the macroscopic fluctuation theory-a nonequilibrium hydrodynamic theory. For systems without excluded volume, our investigation reveals adherence to the well-established Arrhenius law. However, in the presence of excluded volume, a universality class emerges, fundamentally altering the escape rate. Remarkably, the modified escape rate within this universality class is independent of the interactions at play. The universality class, demonstrating the importance of excluded volume effects, may bring insights to the interpretation of escape processes in the realm of chemical physics.
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Affiliation(s)
- Vishwajeet Kumar
- The Institute of Mathematical Sciences, CIT Campus, Taramani, Chennai 600113, India
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India
| | - Arnab Pal
- The Institute of Mathematical Sciences, CIT Campus, Taramani, Chennai 600113, India
- Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India
| | - Ohad Shpielberg
- Department of Mathematics and Physics, University of Haifa at Oranim, Kiryat Tivon 3600600, Israel
- Haifa Research Center for Theoretical Physics and Astrophysics, University of Haifa, Abba Khoushy Avenue 199, Haifa 3498838, Israel
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7
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Jonas HJ, Schall P, Bolhuis PG. Activity affects the stability, deformation and breakage dynamics of colloidal architectures. SOFT MATTER 2024; 20:2162-2177. [PMID: 38351836 DOI: 10.1039/d3sm01255g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/29/2024]
Abstract
Living network architectures, such as the cytoskeleton, are characterized by continuous energy injection, leading to rich but poorly understood non-equilibrium physics. There is a need for a well-controlled (experimental) model system that allows basic insight into such non-equilibrium processes. Activated self-assembled colloidal architectures can fulfill this role, as colloidal patchy particles can self-assemble into colloidal architectures such as chains, rings and networks, while self-propelled colloidal particles can simultaneously inject energy into the architecture, alter the dynamical behavior of the system, and cause the self-assembled structures to deform and break. To gain insight, we conduct a numerical investigation into the effect of introducing self-propelled colloids modeled as active Brownian particles, into self-assembling colloidal dispersions of dipatch and tripatch particles. For the interaction potential, we use a previously designed model that accurately can reproduce experimental colloidal self-assembly via the critical Casimir force [Jonas et al., J. Chem. Phys., 2021, 135, 034902]. Here, we focus primarily on the breakage dynamics of three archetypal substructures, namely, dimers, chains, and rings. We find a rich response behavior to the introduction of self-propelled particles, in which the activity can enhance as well as reduce the stability of the architecture, deform the intact structures and alter the mechanisms of fragmentation. We rationalize these findings in terms of the rate and mechanisms of breakage as a function of the direction and magnitude of the active force by separating the bond breakage process into two stages: escaping the potential well and separation of the particles. The results set the stage for investigating more complex architectures.
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Affiliation(s)
- H J Jonas
- van 't Hoff Institute for Molecular Sciences, University of Amsterdam, PO Box 94157, 1090 GD Amsterdam, The Netherlands.
| | - P Schall
- van der Waals-Zeeman Institute, Institute of Physics, University of Amsterdam, PO Box 94485, 1090 GL Amsterdam, The Netherlands
| | - P G Bolhuis
- van 't Hoff Institute for Molecular Sciences, University of Amsterdam, PO Box 94157, 1090 GD Amsterdam, The Netherlands.
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8
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Angelani L. Optimal escapes in active matter. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2024; 47:9. [PMID: 38281233 PMCID: PMC11222286 DOI: 10.1140/epje/s10189-023-00402-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Accepted: 12/20/2023] [Indexed: 01/30/2024]
Abstract
The out-of-equilibrium character of active particles, responsible for accumulation at boundaries in confining domains, determines not-trivial effects when considering escape processes. Non-monotonous behavior of exit times with respect to tumbling rate (inverse of mean persistent time) appears, as a consequence of the competing processes of exploring the bulk and accumulate at boundaries. By using both 1D analytical results and 2D numerical simulations of run-and-tumble particles with different behaviours at boundaries, we scrutinize this very general phenomenon of active matter, evidencing the role of accumulation at walls for the existence of optimal tumbling rates for fast escapes.
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Affiliation(s)
- Luca Angelani
- Istituto dei Sistemi Complessi, Consiglio Nazionale delle Ricerche, Piazzale A. Moro 2, I-00185, Roma, Italy.
- Dipartimento di Fisica, Sapienza Università di Roma, Piazzale A. Moro 2, I-00185, Roma, Italy.
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9
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Damascena RH, de Souza Silva CC. Noise-induced escape of a self-propelled particle from metastable orbits. Phys Rev E 2023; 108:044605. [PMID: 37978690 DOI: 10.1103/physreve.108.044605] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2023] [Accepted: 10/06/2023] [Indexed: 11/19/2023]
Abstract
Active particles, like motile microorganisms and active colloids, are often found in confined environments where they can be arrested in a persistent orbital motion. Here, we investigate noise-induced switching between different coexisting orbits of a confined active particle as a stochastic escape problem. We show that, in the low-noise regime, this problem can be formulated as a least-action principle, which amounts to finding the most probable escape path from an orbit to the basin of attraction of another coexisting orbit. The corresponding action integral coincides with the activation energy, a quantity readily accessible in experiments and simulations via escape rate data. To illustrate how this approach can be used to tackle specific problems, we calculate optimum escape paths and activation energies for noise-induced transitions between clockwise and counterclockwise circular orbits of an active particle in radially symmetric confinement. We also investigated transitions between orbits of different topologies (ovals and lemniscates) coexisting in elliptic confinement. In all worked examples, the calculated optimum paths and minimum actions are in excellent agreement with mean-escape-time data obtained from direct numerical integration of the Langevin equations.
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Affiliation(s)
- Rubens H Damascena
- Departamento de Física, Centro de Ciências Exatas e da Natureza, Universidade Federal de Pernambuco, Recife-PE, 50670-901, Brasil
| | - Clécio C de Souza Silva
- Departamento de Física, Centro de Ciências Exatas e da Natureza, Universidade Federal de Pernambuco, Recife-PE, 50670-901, Brasil
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10
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Chugh A, Ganesh R. Role of translational noise on current reversals of active particles on ratchet. Sci Rep 2023; 13:16154. [PMID: 37758752 PMCID: PMC10533559 DOI: 10.1038/s41598-023-42066-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Accepted: 09/05/2023] [Indexed: 09/29/2023] Open
Abstract
In this study, we explore using Langevin dynamics simulations, the role of thermal fluctuations on the rectification of non-interacting inertial active (self-propelled) particles in a rocking ratchet setup in the absence and in the presence of the external time periodic drive. The system is first studied in the absence of the external drive. It is found that the average velocity is always positive and a peaked function of the translational noise, indicating that the asymmetry effects dominate at intermediate values of the strength of the thermal noise. In the second part of this work, we study the effect of the external drive on the dynamics of the system by exploring a phase diagram in the parameter space of translational noise and driving frequency for two different strengths of rotational diffusion. For a given constant amplitude of the active force and amplitude of external drive less than the maximum force due to the potential, the average velocity magnitude as well as the direction ([Formula: see text]) is found to depend on the rotational diffusion, frequency of the external drive and the strength of the translational noise. We discover certain critical parameters in the phase space at which current reversals happen. It is found that when the average particle energy is lower than the potential energy of the barrier, symmetry breaking dominates and the currents are in the 'easy' direction of the ratchet. On the other hand, when the energy available per particle crosses the potential energy of the barrier, the competition between inertial effects and diffusion effects decides the direction of currents. We explain our findings by constructing phase difference datum, velocity probability distribution, and current probability analyses. Our results provide a novel method for controlling the direction of transport of inertial active particles.
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Affiliation(s)
- Anshika Chugh
- Institute for Plasma Research, Bhat, Gandhinagar, 382428, India
- Homi Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai, 400094, India
| | - Rajaraman Ganesh
- Institute for Plasma Research, Bhat, Gandhinagar, 382428, India.
- Homi Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai, 400094, India.
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11
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Baldovin M, Guéry-Odelin D, Trizac E. Control of Active Brownian Particles: An Exact Solution. PHYSICAL REVIEW LETTERS 2023; 131:118302. [PMID: 37774311 DOI: 10.1103/physrevlett.131.118302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Revised: 07/17/2023] [Accepted: 08/15/2023] [Indexed: 10/01/2023]
Abstract
Control of stochastic systems is a challenging open problem in statistical physics, with a wealth of potential applications from biology to granulates. Unlike most cases investigated so far, we aim here at controlling a genuinely out-of-equilibrium system, the two dimensional active Brownian particles model in a harmonic potential, a paradigm for the study of self-propelled bacteria. We search for protocols for the driving parameters (stiffness of the potential and activity of the particles) bringing the system from an initial passivelike steady state to a final activelike one, within a chosen time interval. The exact analytical results found for this prototypical model of self-propelled particles brings control techniques to a wider class of out-of-equilibrium systems.
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Affiliation(s)
- Marco Baldovin
- Université Paris-Saclay, CNRS, LPTMS, 91405, Orsay, France
- Institute for Complex Systems, CNR, 00185, Rome, Italy
| | - David Guéry-Odelin
- Université Paul Sabatier-Toulouse 3, CNRS, LCAR, 31062 Toulouse Cedex 9, France
| | - Emmanuel Trizac
- Université Paris-Saclay, CNRS, LPTMS, 91405, Orsay, France
- Ecole normale supérieure de Lyon, F-69342 Lyon, France
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12
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Raynal D, de Guillebon T, Guéry-Odelin D, Trizac E, Lauret JS, Rondin L. Shortcuts to Equilibrium with a Levitated Particle in the Underdamped Regime. PHYSICAL REVIEW LETTERS 2023; 131:087101. [PMID: 37683149 DOI: 10.1103/physrevlett.131.087101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Accepted: 07/24/2023] [Indexed: 09/10/2023]
Abstract
We report on speeding-up equilibrium recovery in the previously unexplored general case of the underdamped regime using an optically levitated particle. We accelerate the convergence toward equilibrium by an order of magnitude compared to the natural relaxation time. We then discuss the efficiency of the studied protocols, especially for a multidimensional system. These results pave the way for optimizing realistic nanomachines with application to sensing and developing efficient nanoheat engines.
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Affiliation(s)
- Damien Raynal
- Université Paris-Saclay, ENS Paris-Saclay, CNRS, CentraleSupélec, LuMIn, 91405 Orsay Cedex, France
| | - Timothée de Guillebon
- Université Paris-Saclay, ENS Paris-Saclay, CNRS, CentraleSupélec, LuMIn, 91405 Orsay Cedex, France
| | - David Guéry-Odelin
- Université Paul Sabatier-Toulouse 3, CNRS, LCAR, 31062 Toulouse Cedex 9, France
| | - Emmanuel Trizac
- Université Paris-Saclay, CNRS, LPTMS, 91405 Orsay Cedex, France
- Univ Lyon, ENS de Lyon, F-69342 Lyon, France
| | - Jean-Sébastien Lauret
- Université Paris-Saclay, ENS Paris-Saclay, CNRS, CentraleSupélec, LuMIn, 91405 Orsay Cedex, France
| | - Loïc Rondin
- Université Paris-Saclay, ENS Paris-Saclay, CNRS, CentraleSupélec, LuMIn, 91405 Orsay Cedex, France
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13
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Pollak E, Miret-Artés S. Recent Developments in Kramers' Theory of Reaction Rates. Chemphyschem 2023; 24:e202300272. [PMID: 37537153 DOI: 10.1002/cphc.202300272] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Revised: 05/26/2023] [Indexed: 08/05/2023]
Abstract
In this short review, we provide an update of recent developments in Kramers' theory of reaction rates. After a brief introduction stressing the importance of this theory initially developed for chemical reactions, we briefly present the main theoretical formalism starting from the generalized Langevin equation and continue by showing the main points of the modern Pollak, Grabert and Hänggi theory. Kramers' theory is then sketched for quantum and classical surface diffusion. As an illustration the surface diffusion of Na atoms on a Cu(110) surface is discussed showing escape rates, jump distributions and diffusion coefficients as a function of reduced friction. Finally, some very recent applications of turnover theory to different fields such as nanoparticle levitation, microcavity polariton dynamics and simulation of reaction in liquids are presented. We end with several open problems and future challenges faced up by Kramers turnover theory.
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Affiliation(s)
- Eli Pollak
- Chemical and Biological Physics Department, Weizmann Institute of Science, 76100, Rehovoth, Israel
| | - Salvador Miret-Artés
- Instituto de Física Fundamental, Consejo, Superior de Investigaciones Científicas, Serrano 123, 28006, Madrid, Spain
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14
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Su M, Lindner B. Active Brownian particles in a biased periodic potential. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2023; 46:22. [PMID: 36995501 DOI: 10.1140/epje/s10189-023-00283-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 03/19/2023] [Indexed: 06/19/2023]
Abstract
We study transport properties of an active Brownian particle with an Rayleigh-Helmholtz friction function in a biased periodic potential. In the absence of noise and depending on the parameters of the friction function and on the bias force, the motion of the particle can be in a locked state or in different running states. According to the type of solutions, the parameter plane of friction and bias force can be divided into four regions. In these different regimes, there is either only a locked state, only a running state, a bistability between locked and running states, or a bistability of two different running states (corresponding to a systematic motion to the left or right, respectively). In the presence of noise, the mean velocity depends in different ways on the noise intensity for the various parameter regimes. These dependences are explored by means of numerical simulations and simple analytical estimates for limiting cases.
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Affiliation(s)
- Meng Su
- School of Mathematics and Statistics, Northwestern Polytechnical University, 710129, Xi'an, Shaanxi, People's Republic of China.
| | - Benjamin Lindner
- Department of Physics, Humboldt Universität zu Berlin, Newtonstr 15, 12489, Berlin, Germany
- Bernstein Center for Computational Neuroscience, Haus 2, Philippstr 13, 10115, Berlin, Germany
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15
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Abdoli I, Löwen H, Sommer JU, Sharma A. Tailoring the escape rate of a Brownian particle by combining a vortex flow with a magnetic field. J Chem Phys 2023; 158:101101. [PMID: 36922145 DOI: 10.1063/5.0139830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2023] Open
Abstract
The probability per unit time for a thermally activated Brownian particle to escape over a potential well is, in general, well-described by Kramers's theory. Kramers showed that the escape time decreases exponentially with increasing barrier height. The dynamics slow down when the particle is charged and subjected to a Lorentz force due to an external magnetic field. This is evident via a rescaling of the diffusion coefficient entering as a prefactor in the Kramers's escape rate without any impact on the barrier-height-dependent exponent. Here, we show that the barrier height can be effectively changed when the charged particle is subjected to a vortex flow. While the vortex alone does not affect the mean escape time of the particle, when combined with a magnetic field, it effectively pushes the fluctuating particle either radially outside or inside depending on its sign relative to that of the magnetic field. In particular, the effective potential over which the particle escapes can be changed to a flat, a stable, and an unstable potential by tuning the signs and magnitudes of the vortex and the applied magnetic field. Notably, the last case corresponds to enhanced escape dynamics.
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Affiliation(s)
- I Abdoli
- Leibniz-Institut für Polymerforschung Dresden, Institut Theorie der Polymere, 01069 Dresden, Germany
| | - H Löwen
- Institut für Theoretische Physik II: Weiche Materie, Heinrich-Heine-Universität Düsseldorf, Düsseldorf 40225, Germany
| | - J-U Sommer
- Leibniz-Institut für Polymerforschung Dresden, Institut Theorie der Polymere, 01069 Dresden, Germany
| | - A Sharma
- Leibniz-Institut für Polymerforschung Dresden, Institut Theorie der Polymere, 01069 Dresden, Germany
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16
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Goerlich R, Pires LB, Manfredi G, Hervieux PA, Genet C. Harvesting information to control nonequilibrium states of active matter. Phys Rev E 2022; 106:054617. [PMID: 36559455 DOI: 10.1103/physreve.106.054617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Accepted: 11/02/2022] [Indexed: 06/17/2023]
Abstract
We propose to use a correlated noise bath to drive an optically trapped Brownian particle that mimics active biological matter. Due to the flexibility and precision of our setup, we are able to control the different parameters that drive the stochastic motion of the particle with unprecedented accuracy, thus reaching strongly correlated regimes that are not easily accessible with real active matter. In particular, by using the correlation time (i.e., the "color") of the noise as a control parameter, we can trigger transitions between two nonequilibrium steady states with no expended work, but only a calorific cost. Remarkably, the measured heat production is directly proportional to the spectral entropy of the correlated noise, in a fashion that is reminiscent of Landauer's principle. Our procedure can be viewed as a method for harvesting information from the active fluctuations.
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Affiliation(s)
- Rémi Goerlich
- Université de Strasbourg, CNRS, Institut de Physique et Chimie des Matériaux de Strasbourg, UMR 7504, F-67000 Strasbourg, France
- Université de Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires, UMR 7006, F-67000 Strasbourg, France
| | - Luís Barbosa Pires
- Université de Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires, UMR 7006, F-67000 Strasbourg, France
| | - Giovanni Manfredi
- Université de Strasbourg, CNRS, Institut de Physique et Chimie des Matériaux de Strasbourg, UMR 7504, F-67000 Strasbourg, France
| | - Paul-Antoine Hervieux
- Université de Strasbourg, CNRS, Institut de Physique et Chimie des Matériaux de Strasbourg, UMR 7504, F-67000 Strasbourg, France
| | - Cyriaque Genet
- Université de Strasbourg, CNRS, Institut de Science et d'Ingénierie Supramoléculaires, UMR 7006, F-67000 Strasbourg, France
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17
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Lisin EA, Vaulina OS, Lisina II, Petrov OF. Motion of a self-propelled particle with rotational inertia. Phys Chem Chem Phys 2022; 24:14150-14158. [PMID: 35648110 DOI: 10.1039/d2cp01313d] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Overdamped active Brownian motion of self-propelled particles in a liquid has been fairly well studied. However, there are a variety of situations in which the overdamped approximation is not justified, for instance, when self-propelled particles move in a low-viscosity medium or when their rotational diffusivity is enhanced by internal active processes or external control. Examples of various origins include biofilaments driven by molecular motors, living and artificial microflyers and interfacial surfers, field-controlled and superfluid microswimmers, vibration-driven granular particles and autonomous mini-robots with sensorial delays, etc. All of them extend active Brownian motion to the underdamped case, i.e., to active Langevin motion, which takes into account inertia. Despite a rich experimental background, there is a gap in the theory in the field where rotational inertia significantly affects the random walk of active particles on all time scales. In particular, although the well-known models of active Brownian and Ornstein-Uhlenbeck particles include a memory effect of the direction of motion, they are not applicable in the underdamped case, because the rotational inertia, which they do not account for, can partially prevent "memory loss" with increasing rotational diffusion. We describe the two-dimensional motion of a self-propelled particle with both translational and rotational inertia and velocity fluctuations. The proposed generalized analytical equations for the mean kinetic energy, mean-square displacement and noise-averaged trajectory of the self-propelled particle are confirmed by numerical simulations in a wide range of self-propulsion velocities, moments of inertia, rotational diffusivities, medium viscosities and observation times.
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Affiliation(s)
- E A Lisin
- Joint Institute for High Temperatures, Russian Academy of Sciences, Moscow, 125412, Russia.
| | - O S Vaulina
- Joint Institute for High Temperatures, Russian Academy of Sciences, Moscow, 125412, Russia.
| | - I I Lisina
- Joint Institute for High Temperatures, Russian Academy of Sciences, Moscow, 125412, Russia.
| | - O F Petrov
- Joint Institute for High Temperatures, Russian Academy of Sciences, Moscow, 125412, Russia.
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18
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Das A, Kuznets-Speck B, Limmer DT. Direct Evaluation of Rare Events in Active Matter from Variational Path Sampling. PHYSICAL REVIEW LETTERS 2022; 128:028005. [PMID: 35089729 DOI: 10.1103/physrevlett.128.028005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Accepted: 12/09/2021] [Indexed: 06/14/2023]
Abstract
Active matter represents a broad class of systems that evolve far from equilibrium due to the local injection of energy. Like their passive analogs, transformations between distinct metastable states in active matter proceed through rare fluctuations; however, their detailed balance violating dynamics renders these events difficult to study. Here, we present a simulation method for evaluating the rate and mechanism of rare events in generic nonequilibrium systems and apply it to study the conformational changes of a passive solute in an active fluid. The method employs a variational optimization of a control force that renders the rare event a typical one, supplying an exact estimate of its rate as a ratio of path partition functions. Using this method we find that increasing activity in the active bath can enhance the rate of conformational switching of the passive solute in a manner consistent with recent bounds from stochastic thermodynamics.
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Affiliation(s)
- Avishek Das
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | | | - David T Limmer
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawerence Berkeley National Laboratory, Berkeley, California 94720, USA
- Material Sciences Division, Lawerence Berkeley National Laboratory, Berkeley, California 94720, USA
- Kavli Energy NanoSciences Institute, University of California, Berkeley, California 94720, USA
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19
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Cherayil BJ. Particle dynamics in viscoelastic media: Effects of non-thermal white noise on barrier crossing rates. J Chem Phys 2021; 155:244903. [PMID: 34972363 DOI: 10.1063/5.0071206] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
The growing interest in the dynamics of self-driven particle motion has brought increased attention to the effects of non-thermal noise on condensed phase diffusion. Thanks to data recently collected by Ferrer et al. on activated dynamics in the presence of memory [Phys. Rev. Lett. 126, 108001 (2021)], some of these effects can now be characterized quantitatively. In the present paper, the data collected by Ferrer et al. are used to calculate the extent to which non-thermal white noise alters the time taken by single micron-sized silica particles in a viscoelastic medium to cross the barrier separating the two wells of an optically created bistable potential. The calculation-based on a generalized version of Kramers's flux-over-population approach-indicates that the added noise causes the barrier crossing rate (compared to the noise-free case) to first increase as a function of the noise strength and then to plateau to a constant value. The precise degree of rate enhancement may depend on how the data from the experiments conducted by Ferrer et al. are used in the flux-over-population approach. As claimed by Ferrer et al., this approach predicts barrier crossing times for the original silica-fluid system that agree almost perfectly with their experimental counterparts. However, this near-perfect agreement between theory and experiment is only achieved if the theoretical crossing times are obtained from the most probable values of a crossing time distribution constructed from the distributions of various parameters in Kramers's rate expression. If the mean values of these parameters are used in the expression instead, as would be commonly done, the theoretical crossing times are found to be as much as 1.5 times higher than the experimental values. However, these times turn out to be consistent with an alternative model of viscoelastic barrier crossing based on a mean first passage time formalism, which also uses mean parameter values in its rate expression. The rate enhancements predicted for barrier crossing under non-thermal noise are based on these mean parameter values and are open to experimental verification.
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Affiliation(s)
- Binny J Cherayil
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, Karnataka, India
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20
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Caprini L, Cecconi F, Marini Bettolo Marconi U. Correlated escape of active particles across a potential barrier. J Chem Phys 2021; 155:234902. [PMID: 34937362 DOI: 10.1063/5.0074072] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We study the dynamics of one-dimensional active particles confined in a double-well potential, focusing on the escape properties of the system, such as the mean escape time from a well. We first consider a single-particle both in near and far-from-equilibrium regimes by varying the persistence time of the active force and the swim velocity. A non-monotonic behavior of the mean escape time is observed with the persistence time of the activity, revealing the existence of an optimal choice of the parameters favoring the escape process. For small persistence times, a Kramers-like formula with an effective potential obtained within the unified colored noise approximation is shown to hold. Instead, for large persistence times, we developed a simple theoretical argument based on the first passage theory, which explains the linear dependence of the escape time with the persistence of the active force. In the second part of the work, we consider the escape on two active particles mutually repelling. Interestingly, the subtle interplay of active and repulsive forces may lead to a correlation between particles, favoring the simultaneous jump across the barrier. This mechanism cannot be observed in the escape process of two passive particles. Finally, we find that in the small persistence regime, the repulsion favors the escape, such as in passive systems, in agreement with our theoretical predictions, while for large persistence times, the repulsive and active forces produce an effective attraction, which hinders the barrier crossing.
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Affiliation(s)
- Lorenzo Caprini
- Heinrich-Heine-University of Düsseldorf, Universitätsstrasse 1, Düsseldorf, Germany
| | - Fabio Cecconi
- Scuola di Scienze e Tecnologie, Università di Camerino, Via Madonna delle Carceri, I-62032 Camerino, Italy
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21
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Debnath T, Chaudhury P, Mukherjee T, Mondal D, Ghosh PK. Escape kinetics of self-propelled particles from a circular cavity. J Chem Phys 2021; 155:194102. [PMID: 34800947 DOI: 10.1063/5.0070842] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We numerically investigate the mean exit time of an inertial active Brownian particle from a circular cavity with single or multiple exit windows. Our simulation results witness distinct escape mechanisms depending on the relative amplitudes of the thermal length and self-propulsion length compared to the cavity and pore sizes. For exceedingly large self-propulsion lengths, overdamped active particles diffuse on the cavity surface, and rotational dynamics solely governs the exit process. On the other hand, the escape kinetics of a very weakly damped active particle is largely dictated by bouncing effects on the cavity walls irrespective of the amplitude of self-propulsion persistence lengths. We show that the exit rate can be maximized for an optimal self-propulsion persistence length, which depends on the damping strength, self-propulsion velocity, and cavity size. However, the optimal persistence length is insensitive to the opening windows' size, number, and arrangement. Numerical results have been interpreted analytically based on qualitative arguments. The present analysis aims at understanding the transport controlling mechanism of active matter in confined structures.
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Affiliation(s)
- Tanwi Debnath
- Department of Chemistry, University of Calcutta, Kolkata 700009, India
| | - Pinaki Chaudhury
- Department of Chemistry, University of Calcutta, Kolkata 700009, India
| | - Taritra Mukherjee
- Department of Chemistry, Presidency University, Kolkata 700073, India
| | - Debasish Mondal
- Department of Chemistry and Center for Molecular and Optical Sciences & Technologies, Indian Institute of Technology Tirupati, Yerpedu 517619, Andhra Pradesh, India
| | - Pulak K Ghosh
- Department of Chemistry, Presidency University, Kolkata 700073, India
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22
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Liu Z, Kuang T, Xiong W, Feng H, Chen X, Xiao G, Luo H. Self-feedback induced bistability in dual-beam intracavity optical tweezers. OPTICS LETTERS 2021; 46:5328-5331. [PMID: 34724467 DOI: 10.1364/ol.439488] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Accepted: 10/07/2021] [Indexed: 06/13/2023]
Abstract
The intracavity optical tweezers is a new, to the best of our knowledge, cavity optomechanics system, implementing a self-feedback control of the particle's position by trapping the particle inside an active ring cavity. This self-feedback mechanism efficiently constructs a novel potential in the cavity. Here we predict and give experimental evidence for the self-feedback induced optical bistability in dual-beam intracavity optical tweezers. Then the characteristics of these bistable potential wells are investigated. The results show that we can prevent the bistable behaviors from destabilizing the trapping stability through tuning the foci offset of two propagating beams in the cavity. This contributes to the use of intracavity optical tweezers as a powerful tool for optical manipulation. Importantly, the thermally activated transition of the trapped particle in the bistable potential is observed for particular experimental parameters. Further investigation of this phenomenon could underlie the mechanism of many metastable-related processes in physics, chemistry, and biology.
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23
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Zanovello L, Faccioli P, Franosch T, Caraglio M. Optimal navigation strategy of active Brownian particles in target-search problems. J Chem Phys 2021; 155:084901. [PMID: 34470340 DOI: 10.1063/5.0064007] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We investigate exploration patterns of a microswimmer, modeled as an active Brownian particle, searching for a target region located in a well of an energy landscape and separated from the initial position of the particle by high barriers. We find that the microswimmer can enhance its success rate in finding the target by tuning its activity and its persistence in response to features of the environment. The target-search patterns of active Brownian particles are counterintuitive and display characteristics robust to changes in the energy landscape. On the contrary, the transition rates and transition-path times are sensitive to the details of the specific energy landscape. In striking contrast to the passive case, the presence of additional local minima does not significantly slow down the active-target-search dynamics.
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Affiliation(s)
- Luigi Zanovello
- Institut für Theoretische Physik, Universität Innsbruck, Technikerstraße 21A, A-6020 Innsbruck, Austria
| | - Pietro Faccioli
- Dipartimento di Fisica, Università degli Studi di Trento, Via Sommarive 14, 38123 Trento, Italy
| | - Thomas Franosch
- Institut für Theoretische Physik, Universität Innsbruck, Technikerstraße 21A, A-6020 Innsbruck, Austria
| | - Michele Caraglio
- Institut für Theoretische Physik, Universität Innsbruck, Technikerstraße 21A, A-6020 Innsbruck, Austria
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24
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Gera T, Sebastian KL. Solution to the Kramers barrier crossing problem caused by two noises: Thermal noise and Poisson white noise. J Chem Phys 2021; 155:014902. [PMID: 34241384 DOI: 10.1063/5.0056506] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We consider the escape of a particle trapped in a metastable potential well and acted upon by two noises. One of the noises is thermal and the other is Poisson white noise, which is non-Gaussian. Using path integral techniques, we find an analytic solution to this generalization of the classic Kramers barrier crossing problem. Using the "barrier climbing" path, we calculate the activation exponent. We also derive an approximate expression for the prefactor. The calculated results are compared with the simulations, and a good agreement between the two is found. Our results show that, unlike in the case of thermal noise, the rate depends not just on the barrier height but also on the shape of the whole barrier. A comparison between the simulations and the theory also shows that a better approximation for the prefactor is needed for agreement for all values of the parameters.
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Affiliation(s)
- Tarun Gera
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, Karnataka, India
| | - K L Sebastian
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore 560012, Karnataka, India
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