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Maity D. Recent advances in the modulation of amyloid protein aggregation using the supramolecular host-guest approaches. Biophys Chem 2023; 297:107022. [PMID: 37058879 DOI: 10.1016/j.bpc.2023.107022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Revised: 04/06/2023] [Accepted: 04/06/2023] [Indexed: 04/16/2023]
Abstract
Misfolding of proteins is associated with many incurable diseases in human beings. Understanding the process of aggregation from monomers to fibrils, the characterization of all intermediate species, and the origin of toxicity is very challenging. Extensive research including computational and experimental shed some light on these tricky phenomena. Non-covalent interactions between amyloidogenic domains of proteins play a major role in their self-assembly which can be disrupted by designed chemical tools. This will lead to the development of inhibitors of detrimental amyloid formations. In supramolecular host-guest chemistry approaches, different macrocycles function as hosts for encapsulating hydrophobic guests, i.e. phenylalanine residues of proteins, in their hydrophobic cavities via non-covalent interactions. In this way, they can disrupt the interactions between adjacent amyloidogenic proteins and prevent their self-aggregation. This supramolecular approach has also emerged as a prospective tool to modify the aggregation of several amyloidogenic proteins. In this review, we discussed recent supramolecular host-guest chemistry-based strategies for the inhibition of amyloid protein aggregation.
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Affiliation(s)
- Debabrata Maity
- Department of Natural Products and Medicinal Chemistry, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad 500007, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.
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2
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Im D, Heo CE, Son MK, Park CR, Kim HI, Choi JM. Kinetic Modulation of Amyloid-β (1–42) Aggregation and Toxicity by Structure-Based Rational Design. J Am Chem Soc 2022; 144:1603-1611. [DOI: 10.1021/jacs.1c10173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Dongjoon Im
- Department of Chemistry, Korea University, Seoul 02841, Republic of Korea
- Center for Proteogenome Research, Korea University, Seoul 02841, Republic of Korea
- Single Cell Analysis Laboratory, Korea University, Seoul 02841, Republic of Korea
| | - Chae Eun Heo
- Department of Chemistry, Korea University, Seoul 02841, Republic of Korea
| | - Myung Kook Son
- Department of Chemistry, Korea University, Seoul 02841, Republic of Korea
- Center for Proteogenome Research, Korea University, Seoul 02841, Republic of Korea
- Single Cell Analysis Laboratory, Korea University, Seoul 02841, Republic of Korea
| | - Chae Ri Park
- Department of Chemistry, Korea University, Seoul 02841, Republic of Korea
- Center for Proteogenome Research, Korea University, Seoul 02841, Republic of Korea
- Single Cell Analysis Laboratory, Korea University, Seoul 02841, Republic of Korea
| | - Hugh I. Kim
- Department of Chemistry, Korea University, Seoul 02841, Republic of Korea
- Center for Proteogenome Research, Korea University, Seoul 02841, Republic of Korea
- Single Cell Analysis Laboratory, Korea University, Seoul 02841, Republic of Korea
| | - Jeong-Mo Choi
- Department of Chemistry, Pusan National University, Busan 46241, Republic of Korea
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3
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Effect of packing density of lipid vesicles on the Aβ42 fibril polymorphism. Chem Phys Lipids 2021; 236:105073. [PMID: 33675780 DOI: 10.1016/j.chemphyslip.2021.105073] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Revised: 02/23/2021] [Accepted: 03/01/2021] [Indexed: 11/22/2022]
Abstract
The aggregation of amyloid-β 1-42 (Aβ42) on lipid membranes is closely related to the pathology of Alzheimer's disease (AD). Herein, we demonstrated the effect of the packing density of lipid vesicles on the Aβ42 fibrillation kinetics and fibril morphology. We used three distinct phosphatidylcholine (PC) lipids, containing different numbers of cis-double bonds in acyl chains, and therefore, a different packing density in the lipid vesicles. Our results showed that the fibrillation of Aβ42 was greatly enhanced and the formed fibrils became shorter as the number of double bonds in lipids increased. Due to the low-density characteristics of dioleoyl phosphatidylcholine (DOPC), Aβ42 monomers were able to interact with the hydrophobic acyl chain of lipids exposed to the aqueous phase, thereby inducing rapid fibrillation and short fibril morphologies. Furthermore, the effects of the anionic lipids dioleoyl phosphatidylserine (DOPS) and dioleoyl phosphatidylglycerol (DOPG), and mixed vesicles of DOPC/DOPS and DOPC/DOPG on Aβ42 fibrillations were investigated. The tight binding of Aβ42 to the lipid head groups via electrostatic interactions was able to suppress the modulation of Aβ42 fibrillations compared to accelerated fibrillations on loosely packed membranes. Our proposed mechanism regarding the influence of lipid packing density on Aβ42 fibrillations provides an advanced understanding of lipid-associated amyloid fibrillations.
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Liu Y, Zhang Y, Yu H, Liu Y. Cucurbituril‐Based Biomacromolecular Assemblies. Angew Chem Int Ed Engl 2020; 60:3870-3880. [DOI: 10.1002/anie.202009797] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Indexed: 12/29/2022]
Affiliation(s)
- Yao‐Hua Liu
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
| | - Ying‐Ming Zhang
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
| | - Hua‐Jiang Yu
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
| | - Yu Liu
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
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5
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Affiliation(s)
- Yao‐Hua Liu
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
| | - Ying‐Ming Zhang
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
| | - Hua‐Jiang Yu
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
| | - Yu Liu
- College of Chemistry State Key Laboratory of Elemento-Organic Chemistry Nankai University Tianjin 300071 China
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6
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Choi TS, Han JY, Heo CE, Lee SW, Kim HI. Electrostatic and hydrophobic interactions of lipid-associated α-synuclein: The role of a water-limited interfaces in amyloid fibrillation. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2018; 1860:1854-1862. [DOI: 10.1016/j.bbamem.2018.02.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2017] [Revised: 02/05/2018] [Accepted: 02/05/2018] [Indexed: 12/22/2022]
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7
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Chen LJ, Chen S, Qin Y, Xu L, Yin GQ, Zhu JL, Zhu FF, Zheng W, Li X, Yang HB. Construction of Porphyrin-Containing Metallacycle with Improved Stability and Activity within Mesoporous Carbon. J Am Chem Soc 2018; 140:5049-5052. [PMID: 29625011 DOI: 10.1021/jacs.8b02386] [Citation(s) in RCA: 96] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The successful construction of porphyrin functionalized metallacycle in the confined cavity of mesoporous carbon FDU-16 (3⊂C) is presented in this study. Because of high dispersity of metallacycles within the mesoporous cavities, the stability and activity of porphyrin-containing metallacycles were obviously improved. For example, 1O2 generation efficiency of 3⊂C is ca. 6-fold faster than that of free metallaycles in solution. Thus, the resultant hybrid material has been successfully employed as a heterogeneous catalyst for photooxidation of sulfides.
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Affiliation(s)
- Li-Jun Chen
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Chang-Kung Chuang Institute, School of Chemistry and Molecular Engineering , East China Normal University , Shanghai 200062 , People's Republic of China
| | - Shangjun Chen
- Department of Chemistry , Shanghai Normal University , Shanghai 200234 , People's Republic of China
| | - Yi Qin
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Chang-Kung Chuang Institute, School of Chemistry and Molecular Engineering , East China Normal University , Shanghai 200062 , People's Republic of China
| | - Lin Xu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Chang-Kung Chuang Institute, School of Chemistry and Molecular Engineering , East China Normal University , Shanghai 200062 , People's Republic of China
| | - Guang-Qiang Yin
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Chang-Kung Chuang Institute, School of Chemistry and Molecular Engineering , East China Normal University , Shanghai 200062 , People's Republic of China.,Department of Chemistry , University of South Florida Tampa , Florida 33620 , United States
| | - Jun-Long Zhu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Chang-Kung Chuang Institute, School of Chemistry and Molecular Engineering , East China Normal University , Shanghai 200062 , People's Republic of China
| | - Fan-Fan Zhu
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Chang-Kung Chuang Institute, School of Chemistry and Molecular Engineering , East China Normal University , Shanghai 200062 , People's Republic of China
| | - Wei Zheng
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Chang-Kung Chuang Institute, School of Chemistry and Molecular Engineering , East China Normal University , Shanghai 200062 , People's Republic of China
| | - Xiaopeng Li
- Department of Chemistry , University of South Florida Tampa , Florida 33620 , United States
| | - Hai-Bo Yang
- Shanghai Key Laboratory of Green Chemistry and Chemical Processes, Chang-Kung Chuang Institute, School of Chemistry and Molecular Engineering , East China Normal University , Shanghai 200062 , People's Republic of China
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Choi TS, Lee J, Han JY, Jung BC, Wongkongkathep P, Loo JA, Lee MJ, Kim HI. Supramolecular Modulation of Structural Polymorphism in Pathogenic α‐Synuclein Fibrils Using Copper(II) Coordination. Angew Chem Int Ed Engl 2018; 57:3099-3103. [DOI: 10.1002/anie.201712286] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Indexed: 12/15/2022]
Affiliation(s)
- Tae Su Choi
- Department of Chemistry Korea University Seoul 02841 Republic of Korea
| | - Jeeyoung Lee
- Department of Biomedical Sciences, Neuroscience Research Institute Seoul National University College of Medicine Seoul 03080 Republic of Korea
| | - Jong Yoon Han
- Department of Chemistry Korea University Seoul 02841 Republic of Korea
| | - Byung Chul Jung
- Department of Biomedical Sciences, Neuroscience Research Institute Seoul National University College of Medicine Seoul 03080 Republic of Korea
| | - Piriya Wongkongkathep
- Department of Chemistry and Biochemistry University of California-Los Angeles Los Angeles CA 90095 USA
- Systems Biology Center, Research Affairs Faculty of Medicine Chulalongkorn University Bangkok 10330 Thailand
| | - Joseph A. Loo
- Department of Chemistry and Biochemistry University of California-Los Angeles Los Angeles CA 90095 USA
- Department of Biological Chemistry David Geffen School of Medicine University of California-Los Angeles Los Angeles CA 90095 USA
- UCLA Molecular Biology Institute UCLA/DOE Institute for Genomics and Proteomics University of California-Los Angeles Los Angeles CA 90095 USA
| | - Min Jae Lee
- Department of Biomedical Sciences, Neuroscience Research Institute Seoul National University College of Medicine Seoul 03080 Republic of Korea
| | - Hugh I. Kim
- Department of Chemistry Korea University Seoul 02841 Republic of Korea
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9
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Choi TS, Lee J, Han JY, Jung BC, Wongkongkathep P, Loo JA, Lee MJ, Kim HI. Supramolecular Modulation of Structural Polymorphism in Pathogenic α‐Synuclein Fibrils Using Copper(II) Coordination. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201712286] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Tae Su Choi
- Department of Chemistry Korea University Seoul 02841 Republic of Korea
| | - Jeeyoung Lee
- Department of Biomedical Sciences, Neuroscience Research Institute Seoul National University College of Medicine Seoul 03080 Republic of Korea
| | - Jong Yoon Han
- Department of Chemistry Korea University Seoul 02841 Republic of Korea
| | - Byung Chul Jung
- Department of Biomedical Sciences, Neuroscience Research Institute Seoul National University College of Medicine Seoul 03080 Republic of Korea
| | - Piriya Wongkongkathep
- Department of Chemistry and Biochemistry University of California-Los Angeles Los Angeles CA 90095 USA
- Systems Biology Center, Research Affairs Faculty of Medicine Chulalongkorn University Bangkok 10330 Thailand
| | - Joseph A. Loo
- Department of Chemistry and Biochemistry University of California-Los Angeles Los Angeles CA 90095 USA
- Department of Biological Chemistry David Geffen School of Medicine University of California-Los Angeles Los Angeles CA 90095 USA
- UCLA Molecular Biology Institute UCLA/DOE Institute for Genomics and Proteomics University of California-Los Angeles Los Angeles CA 90095 USA
| | - Min Jae Lee
- Department of Biomedical Sciences, Neuroscience Research Institute Seoul National University College of Medicine Seoul 03080 Republic of Korea
| | - Hugh I. Kim
- Department of Chemistry Korea University Seoul 02841 Republic of Korea
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10
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Okesola BO, Mata A. Multicomponent self-assembly as a tool to harness new properties from peptides and proteins in material design. Chem Soc Rev 2018; 47:3721-3736. [DOI: 10.1039/c8cs00121a] [Citation(s) in RCA: 158] [Impact Index Per Article: 26.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Nature is enriched with a wide variety of complex, synergistic and highly functional protein-based multicomponent assemblies.
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Affiliation(s)
- Babatunde O. Okesola
- School of Engineering and Materials Science
- Institute of Bioengineering
- Queen Mary University of London
- UK
| | - Alvaro Mata
- School of Engineering and Materials Science
- Institute of Bioengineering
- Queen Mary University of London
- UK
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11
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Konar S, Sen S, Pathak A. Morphological Effects of CuO Nanostructures on Fibrillation of Human Serum Albumin. J Phys Chem B 2017; 121:11437-11448. [PMID: 29202580 DOI: 10.1021/acs.jpcb.7b08432] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The influence of different morphologies of nanostructures on amyloid fibrillation has been investigated by monitoring the fibrillation of human serum albumin (HSA) in the presence of rod-, sphere-, flower-, and star-shaped copper oxide (CuO) nanostructures. The different morphologies of CuO have been synthesized from an aqueous solution-based precipitation method using various organic acids, viz., acetic acid, citric acid, and tartaric acid. The fibrillation process of HSA has been examined using various biophysical techniques, e.g., Thioflavin T fluorescence, Congo red binding studies through UV spectroscopy, circular dichroism spectroscopy, and fluorescence microscopy. The monolayer protein coverage on the CuO nanostructures has been established through DLS studies, and the well-fitted Langmuir isotherm model has been used to interpret the differential adsorption behavior of HSA molecules on the CuO nanostructures. The nanostar-shaped CuO, by virtue of their higher specific surface area (94.45 m2 g-1), presence of high indexed facets {211} and high positive surface charge potential (+16.2 mV at pH 7.0) was found to show the highest adsorption of the HSA monomers and thus was more competent to inhibit the formation of HSA fibrils compared to the other nanostructures of CuO.
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Affiliation(s)
- Suraj Konar
- Department of Chemistry, Indian Institute of Technology Kharagpur , Kharagpur 721302, India
| | - Shubhatam Sen
- Advanced Technology Development Centre, Indian Institute of Technology Kharagpur , Kharagpur 721302, India
| | - Amita Pathak
- Department of Chemistry, Indian Institute of Technology Kharagpur , Kharagpur 721302, India
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