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Donmazov S, Saruhan EN, Pekkan K, Piskin S. Review of Machine Learning Techniques in Soft Tissue Biomechanics and Biomaterials. Cardiovasc Eng Technol 2024; 15:522-549. [PMID: 38956008 DOI: 10.1007/s13239-024-00737-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 05/28/2024] [Indexed: 07/04/2024]
Abstract
BACKGROUND AND OBJECTIVE Advanced material models and material characterization of soft biological tissues play an essential role in pre-surgical planning for vascular surgeries and transcatheter interventions. Recent advances in heart valve engineering, medical device and patch design are built upon these models. Furthermore, understanding vascular growth and remodeling in native and tissue-engineered vascular biomaterials, as well as designing and testing drugs on soft tissue, are crucial aspects of predictive regenerative medicine. Traditional nonlinear optimization methods and finite element (FE) simulations have served as biomaterial characterization tools combined with soft tissue mechanics and tensile testing for decades. However, results obtained through nonlinear optimization methods are reliable only to a certain extent due to mathematical limitations, and FE simulations may require substantial computing time and resources, which might not be justified for patient-specific simulations. To a significant extent, machine learning (ML) techniques have gained increasing prominence in the field of soft tissue mechanics in recent years, offering notable advantages over conventional methods. This review article presents an in-depth examination of emerging ML algorithms utilized for estimating the mechanical characteristics of soft biological tissues and biomaterials. These algorithms are employed to analyze crucial properties such as stress-strain curves and pressure-volume loops. The focus of the review is on applications in cardiovascular engineering, and the fundamental mathematical basis of each approach is also discussed. METHODS The review effort employed two strategies. First, the recent studies of major research groups actively engaged in cardiovascular soft tissue mechanics are compiled, and research papers utilizing ML and deep learning (DL) techniques were included in our review. The second strategy involved a standard keyword search across major databases. This approach provided 11 relevant ML articles, meticulously selected from reputable sources including ScienceDirect, Springer, PubMed, and Google Scholar. The selection process involved using specific keywords such as "machine learning" or "deep learning" in conjunction with "soft biological tissues", "cardiovascular", "patient-specific," "strain energy", "vascular" or "biomaterials". Initially, a total of 25 articles were selected. However, 14 of these articles were excluded as they did not align with the criteria of focusing on biomaterials specifically employed for soft tissue repair and regeneration. As a result, the remaining 11 articles were categorized based on the ML techniques employed and the training data utilized. RESULTS ML techniques utilized for assessing the mechanical characteristics of soft biological tissues and biomaterials are broadly classified into two categories: standard ML algorithms and physics-informed ML algorithms. The standard ML models are then organized based on their tasks, being grouped into Regression and Classification subcategories. Within these categories, studies employ various supervised learning models, including support vector machines (SVMs), bagged decision trees (BDTs), artificial neural networks (ANNs) or deep neural networks (DNNs), and convolutional neural networks (CNNs). Additionally, the utilization of unsupervised learning approaches, such as autoencoders incorporating principal component analysis (PCA) and/or low-rank approximation (LRA), is based on the specific characteristics of the training data. The training data predominantly consists of three types: experimental mechanical data, including uniaxial or biaxial stress-strain data; synthetic mechanical data generated through non-linear fitting and/or FE simulations; and image data such as 3D second harmonic generation (SHG) images or computed tomography (CT) images. The evaluation of performance for physics-informed ML models primarily relies on the coefficient of determinationR 2 . In contrast, various metrics and error measures are utilized to assess the performance of standard ML models. Furthermore, our review includes an extensive examination of prevalent biomaterial models that can serve as physical laws for physics-informed ML models. CONCLUSION ML models offer an accurate, fast, and reliable approach for evaluating the mechanical characteristics of diseased soft tissue segments and selecting optimal biomaterials for time-critical soft tissue surgeries. Among the various ML models examined in this review, physics-informed neural network models exhibit the capability to forecast the mechanical response of soft biological tissues accurately, even with limited training samples. These models achieve highR 2 values ranging from 0.90 to 1.00. This is particularly significant considering the challenges associated with obtaining a large number of living tissue samples for experimental purposes, which can be time-consuming and impractical. Additionally, the review not only discusses the advantages identified in the current literature but also sheds light on the limitations and offers insights into future perspectives.
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Affiliation(s)
- Samir Donmazov
- Department of Mathematics, University of Kentucky, Lexington, KY, 40506, USA
| | - Eda Nur Saruhan
- Department of Computer Science and Engineering, Koc University, Sariyer, Istanbul, Turkey
| | - Kerem Pekkan
- Department of Mechanical Engineering, Koc University, Sariyer, Istanbul, Turkey
| | - Senol Piskin
- Department of Mechanical Engineering, Faculty of Engineering and Natural Sciences, Istinye University, Vadi Kampusu, Sariyer, 34396, Istanbul, Turkey.
- Modeling, Simulation and Extended Reality Laboratory, Faculty of Engineering and Natural Sciences, Istinye University, Vadi Kampusu, Sariyer, 34396, Istanbul, Turkey.
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Cakmak YO, Khwaounjoo P, Pangilinan J, Wise IK, Burrows C, Kolakshyapati P, Williams Z, Bannon P. Decreasing the blood flow of non-compressible intra-abdominal organs with non-invasive transcutaneous electrical stimulation. Sci Rep 2024; 14:10122. [PMID: 38698055 PMCID: PMC11066058 DOI: 10.1038/s41598-024-55165-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Accepted: 02/21/2024] [Indexed: 05/05/2024] Open
Abstract
Non-invasive neuromodulation of non-compressible internal organs has significant potential for internal organ bleeding and blood-shift in aero/space medicine. The present study aims to investigate the potential influences of the non-invasive transcutaneous electrical nerve stimulation (TENS) on multiple non-compressible internal organs' blood flow. Porcine animal model (n = 8) was randomized for a total of 48 neuromodulation sessions with two different TENS stimulation frequencies (80 Hz, 10 Hz) and a placebo stimulation. A combination of two different electrode configurations (Abdominal-only or Abdominal and hind limb) were also performed. Intraarterial blood flow measurements were taken during pre and post-stimulation periods at the left renal artery, common hepatic artery, and left coronary artery. Intracranial, and extracranial arterial blood flows were also assessed with digital subtraction angiography. TENS with abdominal-only electrode configurations at 10 Hz demonstrated significant reductions in average peak blood flow velocity (APV) of the common hepatic artery (p = 0.0233) and renal arteries (p = 0.0493). Arterial pressures (p = 0.0221) were also significantly lower when renal APV was reduced. The outcome of the present study emphasises the potential use of TENS in decreasing the blood flow of non-compressible internal organs when the correct combination of electrodes configuration and frequency is used.
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Affiliation(s)
- Yusuf O Cakmak
- Point-of-Care Technologies Theme, Centre for Bioengineering and Nanotechnology, Dunedin, New Zealand.
- Interventional Technologies Theme, Medical Technologies Centre of Research Excellence, Auckland, New Zealand.
- Centre for Health Systems and Technologies, University of Otago, Dunedin, New Zealand.
- Brain Health Research Centre, University of Otago, Dunedin, New Zealand.
- Cakmak Lab, Department of Anatomy, School of Biomedical Sciences, University of Otago, PO BOX 56, Dunedin, 9054, New Zealand.
| | - Prashanna Khwaounjoo
- Cakmak Lab, Department of Anatomy, School of Biomedical Sciences, University of Otago, PO BOX 56, Dunedin, 9054, New Zealand
- Auckland Bioengineering Institute, University of Auckland, Auckland, New Zealand
| | - Joseph Pangilinan
- Cakmak Lab, Department of Anatomy, School of Biomedical Sciences, University of Otago, PO BOX 56, Dunedin, 9054, New Zealand
| | - Innes K Wise
- Hybrid Theatre, Charles Perkins Centre, The University of Sydney, Sydney, Australia
| | - Chris Burrows
- Hybrid Theatre, Charles Perkins Centre, The University of Sydney, Sydney, Australia
| | | | - Zoe Williams
- Hybrid Theatre, Charles Perkins Centre, The University of Sydney, Sydney, Australia
| | - Paul Bannon
- Hybrid Theatre, Charles Perkins Centre, The University of Sydney, Sydney, Australia
- Cardiovascular Surgery, Sydney Medical School, Sydney, Australia
- The Baird Institute of Applied Heart & Lung Surgical Research, Sydney, Australia
- Department of Cardiothoracic Surgery, Royal Prince Alfred Hospital, Sydney, Australia
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Han HC, Sultan S, Xiang M. The effects of axial twisting and material non-symmetry on arterial bent buckling. J Biomech 2023; 157:111735. [PMID: 37499429 DOI: 10.1016/j.jbiomech.2023.111735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 06/25/2023] [Accepted: 07/18/2023] [Indexed: 07/29/2023]
Abstract
Artery buckling occurs due to hypertensive lumen pressure or reduced axial tension and other pathological conditions. Since arteries in vivo often experience axial twisting and the collagen fiber alignment in the arterial wall may become nonsymmetric, it is imperative to know how axial twisting and nonsymmetric collagen alignment would affect the buckling behavior of arteries. To this end, the objective of this study was to determine the effect of axial twisting and nonsymmetric collagen fiber distribution on the critical pressure of arterial bent buckling. The buckling model analysis was generalized to incorporate an axial twist angle and nonsymmetric fiber alignment. The effect of axial twisting on the critical pressure was simulated and experimentally tested in a group of porcine carotid arteries. Our results showed that axial twisting tends to reduce the critical pressure depending on the axial stretch ratio and twist angle. In addition, nonsymmetric fiber alignment reduces the critical pressure. Experimental results confirmed that a twist angle of 90° reduces the critical pressure significantly (p < 0.05). It was concluded that axial twisting and non-axisymmetric collagen fibers distribution could make arteries prone to bent buckling. These results enrich our understanding of artery buckling and vessel tortuosity. The model analysis and results could also be applicable to other fiber reinforced tubes under lumen pressure and axial twisting.
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Affiliation(s)
- Hai-Chao Han
- Department of Mechanical Engineering, The University of Texas at San Antonio, San Antonio, TX 78249, United States.
| | - Sarah Sultan
- Department of Mechanical Engineering, The University of Texas at San Antonio, San Antonio, TX 78249, United States
| | - Michael Xiang
- Department of Mechanical Engineering, The University of Texas at San Antonio, San Antonio, TX 78249, United States
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Raisi A, Davoodi F. Testicular torsions in veterinary medicine. Vet Res Commun 2022; 46:303-313. [PMID: 35001221 DOI: 10.1007/s11259-021-09873-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Accepted: 12/04/2021] [Indexed: 10/19/2022]
Abstract
The purpose of this review is to provide a comprehensive comparison of spermatic cord torsion in domestic animals. Spermatic cord torsion leads to occlusion of testicular blood flow resulting in ischemia and tissue hypoxia. Spermatic cord torsion has been reported in all domestic mammals but dogs and horses are overrepresented. Abdominal pain (colic), anorexia, vomiting, lameness, and stiff gait are the most common clinical signs reported. The condition may be asymptomatic in cases of a low degree of spermatic cord torsion. In dogs, spermatic cord torsion is most commonly reported in undescended testes, which in some cases are neoplastic. However, in horses, spermatic cord torsion occurs more commonly in scrotal testes. Surgical treatment for spermatic cord torsion depends upon the degree and duration of torsion. If the affected testis is located within the scrotum and determined to still be viable, detorsion with orchidopexy can be performed. Orchiopexy of the unaffected scrotal testis is also recommended in stallions. If the affected testis cannot be salvaged, unilateral or bilateral orchidectomy is recommended. In all cases of spermatic cord torsion of an undescended testis, orchidectomy is recommended. Veterinarians should be aware of the clinical signs and treatment options for spermatic cord torsion in domestic mammals.
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Affiliation(s)
- Abbas Raisi
- Department of Clinical Sciences, Faculty of Veterinary Medicine, Lorestan University, Khorramabad, Iran.
| | - Farshid Davoodi
- Department of Clinical Sciences, Faculty of Veterinary Medicine, Lorestan University, Khorramabad, Iran. .,Department of Surgery and Diagnostic Imaging, Faculty of Veterinary Medicine, Urmia University, Urmia, Iran.
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Abstract
Vascular tortuosity may impede blood flow, occlude the lumen, and ultimately lead to ischemia or even infarction. Mechanical loads like blood pressure, axial force, and also torsion are key factors participating in this complex mechanobiological process. The available studies on arterial torsion instability followed computational or experimental approaches, yet single available theoretical study had modeled the artery as isotropic linear elastic. This paper aim is to validate a theoretical model of arterial torsion instability against experimental data. The artery is modeled as a single-layered, nonlinear, hyperelastic, anisotropic solid, with parameters calibrated from experiment. Linear bifurcation analysis is then performed to predict experimentally measured stability margins. Uncertainties in geometrical parameters and in measured mechanical response were considered. Also, the type of rate (incremental) boundary conditions (RBCs) impact on the results was examined (e.g., dead load, fluid pressure). The predicted critical torque and twist angle followed the experimentally measured trends. The closest prediction errors in the critical torque and twist rate were 22% and 67%, respectively. Using the different RBCs incurred differences of up to 50% difference within the model predictions. The present results suggest that the model may require further improvements. However, it offers an approach that can be used to predict allowable twist levels in surgical procedures (like anastomosis and grafting) and in the design of stents for arteries subjected to high torsion levels (like the femoropopliteal arteries). It may also be instructive in understanding biomechanical processes like arterial tortuosity, kinking, and coiling.
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Affiliation(s)
- Nir Emuna
- Faculty of Aerospace Engineering, Technion-Israel Institute of Technology, Haifa 32000, Israel
| | - David Durban
- Faculty of Aerospace Engineering, Technion-Israel Institute of Technology, Haifa 32000, Israel
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Poli D, Andreoli R, Moscato L, Pelà G, de Palma G, Cavallo D, Petyx M, Pelosi G, Corradi M, Goldoni M. The Relationship Between Widespread Pollution Exposure and Oxidized Products of Nucleic Acids in Seminal Plasma and Urine in Males Attending a Fertility Center. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:ijerph17061880. [PMID: 32183208 PMCID: PMC7143937 DOI: 10.3390/ijerph17061880] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Revised: 03/04/2020] [Accepted: 03/05/2020] [Indexed: 12/17/2022]
Abstract
Background: In recent decades, there has been an increase in male infertility, and in many cases, the etiology remains unclear. Several studies relate male hypo-fertility to xenobiotic exposure, even if no data exist about multiple exposure at the environmental level. Methods: The study involved 86 males with diagnosis of idiopathic male infertility (IMI), and 46 controls with no alteration in sperm characteristics. Seminal plasma (SP) and urine samples were analyzed by liquid chromatography tandem mass spectrometry (LC-MS/MS) to quantify biomarkers of exposure (the main metabolites of benzene, toluene, 1,3-butadiene, 3-monochloropropanediol, styrene, and naphthol) and effect (oxidized products of nucleic acids).Results: Biomarker concentrations were similar in subjects with IMI and controls even if a stronger correlation between biomarkers of exposure and effects were observed in SP. Data show that, both in SP and urine, most metabolites were inter-correlated, indicating a simultaneous co-exposure to the selected substances at the environmental level. Principal component analysis showed in SP the clustering of mercapturic acids indicating a preferential metabolic pathway with Glutathione (GSH) depletion and, consequently, an increase of oxidative stress. This result was also confirmed by multivariable analysis through the development of explanatory models for oxidized products of nucleic acids. Conclusions: This study highlights how oxidative stress on the male reproductive tract can be associated with a different representation of metabolic pathways making the reproductive tract itself a target organ for different environmental pollutants. Our results demonstrate that SP is a suitable matrix to assess the exposure and evaluate the effects of reproductive toxicants in environmental/occupational medicine. The statistical approach proposed in this work represents a model appropriate to study the relationship between multiple exposure and effect, applicable even to a wider variety of chemicals.
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Affiliation(s)
- Diana Poli
- Department of Occupational and Environmental Medicine, Epidemiology and Hygiene, INAIL Research, Via Fontana Candida1, 00078 Monte Porzio Catone, Rome, Italy; (D.P.); (D.C.); (M.P.)
| | - Roberta Andreoli
- Department of Medicine and Surgery, University of Parma, via A. Gramsci 14, 43126 Parma, Italy; (R.A.); (G.P.); (M.C.)
- Centre for Research in Toxicology (CERT), University of Parma, via A. Gramsci 14, 43126 Parma, Italy
| | - Lucia Moscato
- Center of Reproductive Infertility (CIR), University Hospital of Parma, via A. Gramsci 14, 43126 Parma, Italy;
| | - Giovanna Pelà
- Department of Medicine and Surgery, University of Parma, via A. Gramsci 14, 43126 Parma, Italy; (R.A.); (G.P.); (M.C.)
- University Hospital of Parma, via A. Gramsci 14, 43126 Parma, Italy
| | - Giuseppe de Palma
- Department of Medicine, Surgery, Radiological Sciences, Public Health and Human Sciences Unit, University of Brescia, 25121 Brescia, Italy;
| | - Delia Cavallo
- Department of Occupational and Environmental Medicine, Epidemiology and Hygiene, INAIL Research, Via Fontana Candida1, 00078 Monte Porzio Catone, Rome, Italy; (D.P.); (D.C.); (M.P.)
| | - Marta Petyx
- Department of Occupational and Environmental Medicine, Epidemiology and Hygiene, INAIL Research, Via Fontana Candida1, 00078 Monte Porzio Catone, Rome, Italy; (D.P.); (D.C.); (M.P.)
| | - Giorgio Pelosi
- Centre for Research in Toxicology (CERT), University of Parma, via A. Gramsci 14, 43126 Parma, Italy
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 11/a, 43124 Parma, Italy;
| | - Massimo Corradi
- Department of Medicine and Surgery, University of Parma, via A. Gramsci 14, 43126 Parma, Italy; (R.A.); (G.P.); (M.C.)
- Centre for Research in Toxicology (CERT), University of Parma, via A. Gramsci 14, 43126 Parma, Italy
- University Hospital of Parma, via A. Gramsci 14, 43126 Parma, Italy
| | - Matteo Goldoni
- Department of Medicine and Surgery, University of Parma, via A. Gramsci 14, 43126 Parma, Italy; (R.A.); (G.P.); (M.C.)
- Centre for Research in Toxicology (CERT), University of Parma, via A. Gramsci 14, 43126 Parma, Italy
- Correspondence:
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