Enhancing optical microscopy illumination to enable quantitative imaging

Development of Planar Illumination Strategies for Solving Mysteries in the Sub-Cellular Realm

Optical microscopy has vastly expanded the frontiers of structural and functional biology, due to the non-invasive probing of dynamic volumes in vivo. However, traditional widefield microscopy illuminating the entire field of view (FOV) is adversely affected by out-of-focus light scatter. Consequently, standard upright or inverted microscopes are inept in sampling diffraction-limited volumes smaller than the optical system's point spread function (PSF). Over the last few decades, several planar and structured (sinusoidal) illumination modalities have offered unprecedented access to sub-cellular organelles and 4D (3D + time) image acquisition. Furthermore, these optical sectioning systems remain unaffected by the size of biological samples, providing high signal-to-noise (SNR) ratios for objective lenses (OLs) with long working distances (WDs). This review aims to guide biologists regarding planar illumination strategies, capable of harnessing sub-micron spatial resolution with a millimeter depth of penetration.

Motion-free TSOM using a deformable mirror

Through-focus scanning optical microscopy (TSOM) is a model-based optical metrology method that involves the scanning of a target through the focus of an optical microscope. Unlike a conventional optical microscope that directly extracts the diffraction-limited optical information from a single in-focus image, the TSOM method extracts nanometer scale sensitive information by matching the target TSOM data/image to reference TSOM data/images that are either experimentally or computationally collected. Therefore, the sensitivity and accuracy of the TSOM method strongly depends on the similarities between the conditions in which the target and reference TSOM images are taken or simulated, especially the lateral instability during through-focus scanning. As a remedy to the lateral instability, we proposed the application of adaptive optics to the through-focus scanning operation and initially developed a closed-loop system with a tip/tilt mirror and a Shack-Hartmann sensor, with which we were able to keep the plane position within peak-to-valley (PV) 33 nm. We then further developed a motion-free TSOM tool reducing the instability down to practically zero by the replacement of the tip/tilt mirror with a deformable mirror that performs through-focus scanning by deforming its mirror surface. The motion-free TSOM tool with a × 50 (NA 0.55) objective lens could provide a scanning range of up to ± 25 µm with a minimum step of 25 nm at a maximum update rate of 4 kHz. The tool was demonstrated to have a recognition accuracy of < 4 nm for critical dimension (CD) values in the range of 60 ∼ 120 nm with a reference TSOM image library generated by a Fourier modal method matching various observations conditions.

Microscopic Techniques for the Analysis of Micro and Nanostructures of Biopolymers and Their Derivatives

Natural biopolymers, a class of materials extracted from renewable sources, is garnering interest due to growing concerns over environmental safety; biopolymers have the advantage of biocompatibility and biodegradability, an imperative requirement. The synthesis of nanoparticles and nanofibers from biopolymers provides a green platform relative to the conventional methods that use hazardous chemicals. However, it is challenging to characterize these nanoparticles and fibers due to the variation in size, shape, and morphology. In order to evaluate these properties, microscopic techniques such as optical microscopy, atomic force microscopy (AFM), and transmission electron microscopy (TEM) are essential. With the advent of new biopolymer systems, it is necessary to obtain insights into the fundamental structures of these systems to determine their structural, physical, and morphological properties, which play a vital role in defining their performance and applications. Microscopic techniques perform a decisive role in revealing intricate details, which assists in the appraisal of microstructure, surface morphology, chemical composition, and interfacial properties. This review highlights the significance of various microscopic techniques incorporating the literature details that help characterize biopolymers and their derivatives.

Detecting nanoscale contamination in semiconductor fabrication using through-focus scanning optical microscopy

This paper reports high-throughput, light-based, through-focus scanning optical microscopy (TSOM) for detecting industrially relevant sub-50 nm tall nanoscale contaminants. Measurement parameter optimization to maximize the TSOM signal using optical simulations made it possible to detect the nanoscale contaminants. Atomic force and scanning electron microscopies were used as reference methods for comparison.

A Facile Technique to Extract the Cross-Sectional Structure of Brittle Porous Chars from Intumescent Coatings

Intumescent coatings are part of passive fire protection systems. In case of fire, they expand under thermal stimuli and reduce heat transfer rates. Their expansion mechanisms are more or less recognized, but the fire testing data shall be interpreted as function of coating morphology. Expansion ratios are examined together with the inner structures of specimens submitted to fire. Bare cutting techniques damage the highly porous and fibrous specimens because they become very crumbly due to charring. So far, absorption contrasted X-ray computed microtomography (CT) was used as a non-destructive technique. Nevertheless, access to X-ray platforms can be relatively expensive and scarce for regular use. Also, it has some drawbacks for carbon rich specimens strongly adhering on steel substrates because it leads sometimes to noisy images and lost data due to resolution limits on specimens reaching ten of centimeters. Therefore, we propose an inexpensive and more accessible experimental approach to observe those specimens with minimized structural damage under visible lighting. To that end, charred specimens were casted into pigmented epoxy resin. After surface treatments, color contrasted cross-sections could be observed under optical digital microscopy thanks to high level of interconnectivity of pores. Subsequent image treatments confirmed that the structural integrity was kept when compared to previous CT data. The proposed method is practical, cheaper and more accessible for the quantitative assessment of inner structure of charred brittle specimens.

Fidelity test for through-focus or volumetric type of optical imaging methods

Rapid increase in interest and applications of through-focus (TF) or volumetric type of optical imaging in biology and other areas has resulted in the development of several TF image collection methods. Achieving quantitative results from images requires standardization and optimization of image acquisition protocols. Several standardization protocols are available for conventional optical microscopy where a best-focus image is used, but to date, rigorous testing protocols do not exist for TF optical imaging. In this paper, we present a method to determine the fidelity of the TF optical data using the TF scanning optical microscopy images.