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Hassan E, Ghaffari A. ISRSL0: compressed sensing MRI with image smoothness regularized-smoothed [Formula: see text] norm. Sci Rep 2024; 14:24305. [PMID: 39414806 PMCID: PMC11484941 DOI: 10.1038/s41598-024-74074-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2024] [Accepted: 09/23/2024] [Indexed: 10/18/2024] Open
Abstract
The reconstruction of MR images has always been a challenging inverse problem in medical imaging. Acceleration of MR scanning is of great importance for clinical research and cutting-edge applications. One of the primary efforts to achieve this is using compressed sensing (CS) theory. The CS aims to reconstruct MR images using a small number of sampled data in k-space. The CS-MRI techniques face challenges, including the potential loss of fine structure and increased computational complexity. We introduce a novel framework based on a regularized sparse recovery problem and a sharpening step to improve the CS-MRI approaches regarding fine structure loss under high acceleration factors. This problem is solved via the Half Quadratic Splitting (HQS) approach. The inverse problem for reconstructing MR images is converted into two distinct sub-problems, each of which can be solved separately. One key feature of the proposed approach is the replacement of one sub-problem with a denoiser. This regularization assists the optimization of the Smoothed [Formula: see text] (SL0) norm in escaping local minimums and enhances its precision. The proposed method consists of smoothing, feature modification, and Smoothed [Formula: see text] cost function optimization. The proposed approach improves the SL0 algorithm for MRI reconstruction without complicating it. The convergence of the proposed approach is illustrated analytically. The experimental results show an acceptable performance of the proposed method compared to the network-based approaches.
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Affiliation(s)
- Elaheh Hassan
- Department of Electrical Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Aboozar Ghaffari
- Department of Electrical Engineering, Iran University of Science and Technology, Tehran, Iran.
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Liu B, Allison W, Peng B, Avidor N, Monserrat B, Jardine AP. Distinguishing Quasiparticle-Phonon Interactions by Ultrahigh-Resolution Lifetime Measurements. PHYSICAL REVIEW LETTERS 2024; 132:176202. [PMID: 38728725 DOI: 10.1103/physrevlett.132.176202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Revised: 01/22/2024] [Accepted: 03/22/2024] [Indexed: 05/12/2024]
Abstract
We present a determination of quasiparticle-phonon interaction strengths at surfaces through measurements of phonon spectra with ultrahigh energy resolution. The lifetimes of low energy surface phonons on a pristine Ru(0001) surface were determined over a wide range of temperatures and an analysis of the temperature dependence enables us to attribute separate contributions from electron-phonon interactions, phonon-phonon interactions, and defect-phonon interactions. Strong electron-phonon interactions are evident at all temperatures and we show they dominate over phonon-phonon interactions below 400 K.
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Affiliation(s)
- Boyao Liu
- SMF Group, Cavendish Laboratory, University of Cambridge, 19 J J Thomson Avenue, Cambridge CB3 0HE, United Kingdom
| | - William Allison
- SMF Group, Cavendish Laboratory, University of Cambridge, 19 J J Thomson Avenue, Cambridge CB3 0HE, United Kingdom
| | - Bo Peng
- TCM Group, Cavendish Laboratory, University of Cambridge, 19 J J Thomson Avenue, Cambridge CB3 0HE, United Kingdom
| | - Nadav Avidor
- SMF Group, Cavendish Laboratory, University of Cambridge, 19 J J Thomson Avenue, Cambridge CB3 0HE, United Kingdom
| | - Bartomeu Monserrat
- TCM Group, Cavendish Laboratory, University of Cambridge, 19 J J Thomson Avenue, Cambridge CB3 0HE, United Kingdom
- Department of Materials Science and Metallurgy, University of Cambridge, 27 Charles Babbage Road, Cambridge CB3 0FS, United Kingdom
| | - Andrew P Jardine
- SMF Group, Cavendish Laboratory, University of Cambridge, 19 J J Thomson Avenue, Cambridge CB3 0HE, United Kingdom
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Bertaux N, Allain M, Weizeorick J, Park JS, Kenesei P, Shastri SD, Almer J, Highland MJ, Maddali S, Hruszkewycz SO. Sub-pixel high-resolution imaging of high-energy x-rays inspired by sub-wavelength optical imaging. OPTICS EXPRESS 2021; 29:35003-35021. [PMID: 34808946 DOI: 10.1364/oe.438945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Accepted: 09/06/2021] [Indexed: 06/13/2023]
Abstract
We have developed and demonstrated an image super-resolution method-XR-UNLOC: X-Ray UNsupervised particle LOCalization-for hard x-rays measured with fast-frame-rate detectors that is an adaptation of the principle of photo-activated localization microscopy (PALM) and stochastic optical reconstruction microscopy (STORM), which enabled biological fluorescence imaging at sub-optical-wavelength scales. We demonstrate the approach on experimental coherent Bragg diffraction data measured with 52 keV x-rays from a nanocrystalline sample. From this sample, we resolve the fine fringe detail of a high-energy x-ray Bragg coherent diffraction pattern to an upsampling factor of 16 of the native pixel pitch of 30 μm of a charge-integrating fastCCD detector. This was accomplished by analysis of individual photon locations in a series of "nearly-dark" instances of the diffraction pattern that each contain only a handful of photons. Central to our approach was the adaptation of the UNLOC photon fitting routine for PALM/STORM to the hard x-ray regime to handle much smaller point spread functions, which required a different statistical test for photon detection and for sub-pixel localization. A comparison to a photon-localization strategy used in the x-ray community ("droplet analysis") showed that XR-UNLOC provides significant improvement in super-resolution. We also developed a metric by which to estimate the limit of reliable upsampling with XR-UNLOC under a given set of experimental conditions in terms of the signal-to-noise ratio of a photon detection event and the size of the point spread function for guiding future x-ray experiments in many disciplines where detector pixelation limits must be overcome.
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Scott CC, Farrier M, Li Y, Laxer S, Ravi P, Kenesei P, Wojcik MJ, Miceli A, Karim KS. High-energy micrometre-scale pixel direct conversion X-ray detector. JOURNAL OF SYNCHROTRON RADIATION 2021; 28:1081-1089. [PMID: 34212871 DOI: 10.1107/s1600577521004835] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Accepted: 05/07/2021] [Indexed: 06/13/2023]
Abstract
The objective of this work was to fabricate and characterize a new X-ray imaging detector with micrometre-scale pixel dimensions (7.8 µm) and high detection efficiency for hard X-ray energies above 20 keV. A key technology component consists of a monolithic hybrid detector built by direct deposition of an amorphous selenium film on a custom designed CMOS readout integrated circuit. Characterization was carried out at the synchrotron beamline 1-BM-B at the Advanced Photon Source of Argonne National Laboratory. The direct conversion detector demonstrated micrometre-scale spatial resolution with a 63 keV modulation transfer function of 10% at Nyquist frequency. In addition, spatial resolving power down to 8 µm was determined by imaging a transmission bar target at 21 keV. X-ray signal linearity, responsivity and lag were also characterized in the same energy range. Finally, phase contrast edge enhancement was observed in a phase object placed in the beam path. This amorphous selenium/CMOS detector technology can address gaps in commercially available X-ray detectors which limit their usefulness for existing synchrotron applications at energies greater than 50 keV; for example, phase contrast tomography and high-resolution imaging of nanoscale lattice distortions in bulk crystalline materials using Bragg coherent diffraction imaging. The technology will also facilitate the creation of novel synchrotron imaging applications for X-ray energies at or above 20 keV.
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Affiliation(s)
- Christopher C Scott
- KA Imaging Inc., 560 Parkside Drive, Unit 3, Waterloo, Ontario, Canada N2L 5Z4
| | - Michael Farrier
- Farrier Microengineering LLC, 616 Petoskey Street, Unit 004, Petoskey, MI 49770, USA
| | - Yunzhe Li
- KA Imaging Inc., 560 Parkside Drive, Unit 3, Waterloo, Ontario, Canada N2L 5Z4
| | - Sam Laxer
- KA Imaging Inc., 560 Parkside Drive, Unit 3, Waterloo, Ontario, Canada N2L 5Z4
| | - Parmesh Ravi
- University of Waterloo, 200 University Avenue West, Waterloo, Ontario, Canada N2L 3G1
| | - Peter Kenesei
- X-ray Science Division Advanced Photon Source, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA
| | - Michael J Wojcik
- X-ray Science Division Advanced Photon Source, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA
| | - Antonino Miceli
- X-ray Science Division Advanced Photon Source, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA
| | - Karim S Karim
- KA Imaging Inc., 560 Parkside Drive, Unit 3, Waterloo, Ontario, Canada N2L 5Z4
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Sakaki H, Yamashita T, Akagi T, Nishiuchi M, Dover NP, Lowe HF, Kondo K, Kon A, Kando M, Tachibana Y, Obata T, Shiokawa K, Miyatake T, Watanabe Y. New algorithm using L1 regularization for measuring electron energy spectra. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2020; 91:075116. [PMID: 32752849 DOI: 10.1063/1.5144897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2020] [Accepted: 06/28/2020] [Indexed: 06/11/2023]
Abstract
Retrieving the spectrum of physical radiation from experimental measurements typically involves using a mathematical algorithm to deconvolve the instrument response function from the measured signal. However, in the field of signal processing known as "Source Separation" (SS), which refers to the process of computationally retrieving the separate source components that generate an overlapping signal on the detector, the deconvolution process can become an ill-posed problem and crosstalk complicates the separation of the individual sources. To overcome this problem, we have designed a magnetic spectrometer for inline electron energy spectrum diagnosis and developed an analysis algorithm using techniques applicable to the problem of SS. An unknown polychromatic electron spectrum is calculated by sparse coding using a Gaussian basis function and an L1 regularization algorithm with a sparsity constraint. This technique is verified by using a specially designed magnetic field electron spectrometer. We use Monte Carlo simulations of the detector response to Maxwellian input energy distributions with electron temperatures of 5.0 MeV, 10.0 MeV, and 15.0 MeV to show that the calculated sparse spectrum can reproduce the input spectrum with an optimum energy bin width automatically selected by the L1 regularization. The spectra are reproduced with a high accuracy of less than 4.0% error, without an initial value. The technique is then applied to experimental measurements of intense laser accelerated electron beams from solid targets. Our analysis concept of spectral retrieval and automatic optimization of energy bin width by sparse coding could form the basis of a novel diagnostic method for spectroscopy.
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Affiliation(s)
| | | | - Takashi Akagi
- Hyogo Ion Beam Medical Center, Tatsuno, Hyogo 679-5165, Japan
| | | | | | | | | | - Akira Kon
- QST KPSI, Kizugawa, Kyoto 6190-215, Japan
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Impact and mitigation of angular uncertainties in Bragg coherent x-ray diffraction imaging. Sci Rep 2019; 9:6386. [PMID: 31011168 PMCID: PMC6477045 DOI: 10.1038/s41598-019-42797-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Accepted: 03/27/2019] [Indexed: 11/08/2022] Open
Abstract
Bragg coherent diffraction imaging (BCDI) is a powerful technique to explore the local strain state and morphology of microscale crystals. The method can potentially reach nanometer-scale spatial resolution thanks to the advances in synchrotron design that dramatically increase coherent flux. However, there are experimental bottlenecks that may limit the image reconstruction quality from future high signal-to-noise ratio measurements. In this work we show that angular uncertainty of the sample orientation with respect to a fixed incoming beam is one example of such a factor, and we present a method to mitigate the resulting artifacts. On the basis of an alternative formulation of the forward problem, we design a phase retrieval algorithm which enables the simultaneous reconstruction of the object and determination of the exact angular position corresponding to each diffraction pattern in the data set. We have tested the algorithm performance on simulated data for different degrees of angular uncertainty and signal-to-noise ratio.
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