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NMR-Based Metabolomics of Rat Hippocampus, Serum, and Urine in Two Models of Autism. Mol Neurobiol 2022; 59:5452-5475. [PMID: 35715683 DOI: 10.1007/s12035-022-02912-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Accepted: 06/03/2022] [Indexed: 10/18/2022]
Abstract
Autism spectrum disorders (ASDs) are increasingly diagnosed as developmental disabilities of unclear etiology related to genetic, epigenetic, or environmental factors. The diagnosis of ASD in children is based on the recognition of typical behavioral symptoms, while no reliable biomarkers are available. Rats in whom ASD-like symptoms are due to maternal administration of the teratogenic drugs valproate or thalidomide on critical day 11 of pregnancy are widely used models in autism research. The present studies, aimed at detecting changes in the levels of hydrophilic and hydrophobic metabolites, were carried out on 1-month-old rats belonging to the abovementioned two ASD models and on a control group. Analysis of both hydrophilic and hydrophobic metabolite levels gives a broader view of possible mechanisms involved in the pathogenesis of autism. Hippocampal proton magnetic resonance (MRS) spectroscopy and ex vivo nuclear magnetic resonance (NMR) analysis of serum and urine samples were used. The results were analyzed using advanced statistical tests. Both the results of our present MRS studies of the hippocampus and of the NMR studies of body fluids in both ASD models, particularly from the THAL model, appeared to be consistent with previously published NMR results of hippocampal homogenates and data from the literature on autistic children. We detected symptoms of disturbances in neurotransmitter metabolism, energy deficit, and oxidative stress, as well as intestinal malfunction, which shed light on the pathogenesis of ASD and could be used for diagnostic purposes. These results confirm the usefulness of the noninvasive techniques used in ASD studies.
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Lanka P, Yang L, Orive-Miguel D, Veesa JD, Tagliabue S, Sudakou A, Samaei S, Forcione M, Kovacsova Z, Behera A, Gladytz T, Grosenick D, Hervé L, Durduran T, Bejm K, Morawiec M, Kacprzak M, Sawosz P, Gerega A, Liebert A, Belli A, Tachtsidis I, Lange F, Bale G, Baratelli L, Gioux S, Alexander K, Wolf M, Sekar SKV, Zanoletti M, Pirovano I, Lacerenza M, Qiu L, Ferocino E, Maffeis G, Amendola C, Colombo L, Frabasile L, Levoni P, Buttafava M, Renna M, Di Sieno L, Re R, Farina A, Spinelli L, Dalla Mora A, Contini D, Taroni P, Tosi A, Torricelli A, Dehghani H, Wabnitz H, Pifferi A. Multi-laboratory performance assessment of diffuse optics instruments: the BitMap exercise. JOURNAL OF BIOMEDICAL OPTICS 2022; 27:JBO-210373SSR. [PMID: 35701869 PMCID: PMC9199954 DOI: 10.1117/1.jbo.27.7.074716] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Accepted: 05/05/2022] [Indexed: 05/06/2023]
Abstract
SIGNIFICANCE Multi-laboratory initiatives are essential in performance assessment and standardization-crucial for bringing biophotonics to mature clinical use-to establish protocols and develop reference tissue phantoms that all will allow universal instrument comparison. AIM The largest multi-laboratory comparison of performance assessment in near-infrared diffuse optics is presented, involving 28 instruments and 12 institutions on a total of eight experiments based on three consolidated protocols (BIP, MEDPHOT, and NEUROPT) as implemented on three kits of tissue phantoms. A total of 20 synthetic indicators were extracted from the dataset, some of them defined here anew. APPROACH The exercise stems from the Innovative Training Network BitMap funded by the European Commission and expanded to include other European laboratories. A large variety of diffuse optics instruments were considered, based on different approaches (time domain/frequency domain/continuous wave), at various stages of maturity and designed for different applications (e.g., oximetry, spectroscopy, and imaging). RESULTS This study highlights a substantial difference in hardware performances (e.g., nine decades in responsivity, four decades in dark count rate, and one decade in temporal resolution). Agreement in the estimates of homogeneous optical properties was within 12% of the median value for half of the systems, with a temporal stability of <5 % over 1 h, and day-to-day reproducibility of <3 % . Other tests encompassed linearity, crosstalk, uncertainty, and detection of optical inhomogeneities. CONCLUSIONS This extensive multi-laboratory exercise provides a detailed assessment of near-infrared Diffuse optical instruments and can be used for reference grading. The dataset-available soon in an open data repository-can be evaluated in multiple ways, for instance, to compare different analysis tools or study the impact of hardware implementations.
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Affiliation(s)
- Pranav Lanka
- Politecnico di Milano, Dipartimento di Fisica, Milano, Italy
- Address all correspondence to Pranav Lanka, ; Heidrun Wabnitz,
| | - Lin Yang
- Physikalisch-Technische Bundesanstalt (PTB), Berlin, Germany
| | | | - Joshua Deepak Veesa
- University of Birmingham, School of Computer Science, Birmingham, United Kingdom
| | | | - Aleh Sudakou
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw, Poland
| | - Saeed Samaei
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw, Poland
| | - Mario Forcione
- University Hospitals Birmingham, National Institute for Health Research Surgical Reconstruction and Microbiology Research Centre, Birmingham, United Kingdom
| | - Zuzana Kovacsova
- UCL, Department of Medical Physics & Biomedical Engineering, London, United Kingdom
| | - Anurag Behera
- Politecnico di Milano, Dipartimento di Fisica, Milano, Italy
| | - Thomas Gladytz
- Physikalisch-Technische Bundesanstalt (PTB), Berlin, Germany
| | - Dirk Grosenick
- Physikalisch-Technische Bundesanstalt (PTB), Berlin, Germany
| | - Lionel Hervé
- Université Grenoble Alpes, CEA, LETI, DTBS, Grenoble, France
| | - Turgut Durduran
- The Institute of Photonic Sciences (ICFO), Castelldefels, Spain
| | - Karolina Bejm
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw, Poland
| | - Magdalena Morawiec
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw, Poland
| | - Michał Kacprzak
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw, Poland
| | - Piotr Sawosz
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw, Poland
| | - Anna Gerega
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw, Poland
| | - Adam Liebert
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw, Poland
| | - Antonio Belli
- University Hospitals Birmingham, National Institute for Health Research Surgical Reconstruction and Microbiology Research Centre, Birmingham, United Kingdom
| | - Ilias Tachtsidis
- UCL, Department of Medical Physics & Biomedical Engineering, London, United Kingdom
| | - Frédéric Lange
- UCL, Department of Medical Physics & Biomedical Engineering, London, United Kingdom
| | - Gemma Bale
- University of Cambridge, Department of Engineering and Department of Physics, Cambridge, United Kingdom
| | - Luca Baratelli
- University of Strasbourg, ICube Laboratory, Strasbourg, France
| | - Sylvain Gioux
- University of Strasbourg, ICube Laboratory, Strasbourg, France
| | - Kalyanov Alexander
- University Hospital Zurich, Biomedical Optics Research Laboratory, Department of Neonatology, Zurich, Switzerland
| | - Martin Wolf
- University Hospital Zurich, Biomedical Optics Research Laboratory, Department of Neonatology, Zurich, Switzerland
| | | | - Marta Zanoletti
- Politecnico di Milano, Dipartimento di Fisica, Milano, Italy
| | - Ileana Pirovano
- Politecnico di Milano, Dipartimento di Fisica, Milano, Italy
| | | | - Lina Qiu
- South China Normal University, School of Software, Guangzhou, China
| | | | - Giulia Maffeis
- Politecnico di Milano, Dipartimento di Fisica, Milano, Italy
| | | | - Lorenzo Colombo
- Politecnico di Milano, Dipartimento di Fisica, Milano, Italy
| | | | - Pietro Levoni
- Politecnico di Milano, Dipartimento di Fisica, Milano, Italy
| | | | - Marco Renna
- Istituto di Fotonica e Nanotecnologie, Milano, Italy
| | - Laura Di Sieno
- Politecnico di Milano, Dipartimento di Fisica, Milano, Italy
| | - Rebecca Re
- Politecnico di Milano, Dipartimento di Fisica, Milano, Italy
- Politecnico di Milano, Dipartimento di Elettronica, Informazione e Bioingegneria, Milano, Italy
| | - Andrea Farina
- Politecnico di Milano, Dipartimento di Elettronica, Informazione e Bioingegneria, Milano, Italy
| | - Lorenzo Spinelli
- Politecnico di Milano, Dipartimento di Elettronica, Informazione e Bioingegneria, Milano, Italy
| | | | - Davide Contini
- Politecnico di Milano, Dipartimento di Fisica, Milano, Italy
| | - Paola Taroni
- Politecnico di Milano, Dipartimento di Fisica, Milano, Italy
| | - Alberto Tosi
- Istituto di Fotonica e Nanotecnologie, Milano, Italy
| | | | - Hamid Dehghani
- University of Birmingham, School of Computer Science, Birmingham, United Kingdom
| | - Heidrun Wabnitz
- Physikalisch-Technische Bundesanstalt (PTB), Berlin, Germany
- Address all correspondence to Pranav Lanka, ; Heidrun Wabnitz,
| | - Antonio Pifferi
- Politecnico di Milano, Dipartimento di Fisica, Milano, Italy
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Ioussoufovitch S, Cohen DJF, Milej D, Diop M. Compressed sensing time-resolved spectrometer for quantification of light absorbers in turbid media. BIOMEDICAL OPTICS EXPRESS 2021; 12:6442-6460. [PMID: 34745748 PMCID: PMC8547999 DOI: 10.1364/boe.433427] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Revised: 08/20/2021] [Accepted: 09/10/2021] [Indexed: 06/13/2023]
Abstract
Time-resolved (TR) spectroscopy is well-suited to address the challenges of quantifying light absorbers in highly scattering media such as living tissue; however, current TR spectrometers are either based on expensive array detectors or rely on wavelength scanning. Here, we introduce a TR spectrometer architecture based on compressed sensing (CS) and time-correlated single-photon counting. Using both CS and basis scanning, we demonstrate that-in homogeneous and two-layer tissue-mimicking phantoms made of Intralipid and Indocyanine Green-the CS method agrees with or outperforms uncompressed approaches. Further, we illustrate the superior depth sensitivity of TR spectroscopy and highlight the potential of the device to quantify absorption changes in deeper (>1 cm) tissue layers.
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Affiliation(s)
- Seva Ioussoufovitch
- Western University, Faculty of Engineering, School of Biomedical Engineering, Collaborative Training Program in Musculoskeletal Health Research, Bone & Joint Institute, 1151 Richmond St., London, N6A 5C1, Canada
| | - David Jonathan Fulop Cohen
- Western University, Schulich School of Medicine & Dentistry, Department of Medical Biophysics, 1151 Richmond St., London, N6A 5C1, Canada
| | - Daniel Milej
- Western University, Schulich School of Medicine & Dentistry, Department of Medical Biophysics, 1151 Richmond St., London, N6A 5C1, Canada
- Lawson Health Research Institute, Imaging Program, 268 Grosvenor St., London, N6A 4V2, Canada
| | - Mamadou Diop
- Western University, Faculty of Engineering, School of Biomedical Engineering, Collaborative Training Program in Musculoskeletal Health Research, Bone & Joint Institute, 1151 Richmond St., London, N6A 5C1, Canada
- Western University, Schulich School of Medicine & Dentistry, Department of Medical Biophysics, 1151 Richmond St., London, N6A 5C1, Canada
- Lawson Health Research Institute, Imaging Program, 268 Grosvenor St., London, N6A 4V2, Canada
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Wojtkiewicz S, Liebert A. Parallel, multi-purpose Monte Carlo code for simulation of light propagation in segmented tissues. Biocybern Biomed Eng 2021. [DOI: 10.1016/j.bbe.2021.03.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Bogaerts E, Ferdinande B, Palmers PJ, Malbrain MLNG, Van Regenmortel N, Wilmer A, Lemmens R, Janssens S, Nijst P, De Deyne C, Verhaert D, Mullens W, Dens J, Dupont M, Ameloot K. The effect of fluid bolus administration on cerebral tissue oxygenation in post-cardiac arrest patients. Resuscitation 2021; 168:1-5. [PMID: 34506875 DOI: 10.1016/j.resuscitation.2021.08.044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2021] [Revised: 08/07/2021] [Accepted: 08/27/2021] [Indexed: 10/20/2022]
Abstract
PURPOSE Fluid boluses (FB) are often used in post-cardiac arrest (CA) patients with haemodynamic instability. Although FB may improve cardiac output (CO) and mean arterial pressure (MAP), FB may also increase central venous pressure (CVP), reduce arterial PaO2, dilute haemoglobin and cause interstitial oedema. The aim of the present study was to investigate the net effect of FB administration on cerebral tissue oxygenation saturation (SctO2) in post-CA patients. METHODS Pre-planned sub-study of the Neuroprotect post-CA trial (NCT02541591). Patients with anticipated fluid responsiveness based on stroke volume variation (SVV) or passive leg raising test were administered a FB of 500 ml plasma-lyte A (Baxter Healthcare) and underwent pre- and post-FB assessments of stroke volume, CO, MAP, CVP, haemoglobin, PaO2 and SctO2. RESULTS 52 patients (mean age 64 ± 12 years, 75% male) received a total of 115 FB. Although administration of a FB resulted in a significant increase of stroke volume (63 ± 22 vs 67 ± 23 mL, p = 0.001), CO (4,2 ± 1,6 vs 4,4 ± 1,7 L/min, p = 0.001) and MAP (74,8 ± 13,2 vs 79,2 ± 12,9 mmHg, p = 0.004), it did not improve SctO2 (68.54 ± 6.99 vs 68.70 ± 6.80%, p = 0.49). Fluid bolus administration also resulted in a significant increase of CVP (10,0 ± 4,5 vs 10,7 ± 4,9 mmHg, p = 0.02), but did not affect PaO2 (99 ± 31 vs 94 ± 31 mmHg, p = 0.15) or haemoglobin concentrations (12,9 ± 2,1 vs 12,8 ± 2,2 g/dL, p = 0.10). In a multivariate model, FB-induced changes in CO (beta 0,77; p = 0.004) and in CVP (beta -0,23; p = 0.02) but not in MAP (beta 0,02; p = 0.18) predicted post-FB ΔSctO2. CONCLUSIONS Despite improvements in CO and MAP, FB administration did not improve SctO2 in post-cardiac arrest patients.
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Affiliation(s)
- E Bogaerts
- Department of Cardiovascular Diseases, University Hospitals Leuven, Leuven, Belgium; Department of Cardiology, Ziekenhuis Oost-Limburg, Schiepse Bos 6, 3600 Genk, Belgium.
| | - B Ferdinande
- Department of Cardiology, Ziekenhuis Oost-Limburg, Schiepse Bos 6, 3600 Genk, Belgium
| | - P J Palmers
- Department of Cardiology, Ziekenhuis Oost-Limburg, Schiepse Bos 6, 3600 Genk, Belgium
| | - M L N G Malbrain
- Medical Department, Medical Direction, AZ Jan Palfijn Hospital, Watersportlaan 5, B-9000 Gent, Belgium; First Department of Anaesthesia and Intensive Therapy, Medical University of Lublin, Aleje Raclawickie 1, 20-059 Lublin, Poland; International Fluid Academy, Dreef 3, B-3360 Lovenjoel, Belgium
| | - N Van Regenmortel
- Department of Intensive Care Medicine, Ziekenhuisnetwerk Antwerpen, Campus Stuivenberg, Antwerp, Belgium
| | - A Wilmer
- Medical Intensive Care Unit, University Hospital Leuven, Leuven, Belgium
| | - R Lemmens
- Department of Neurology, University Hospitals Leuven, Leuven, Belgium
| | - S Janssens
- Department of Cardiovascular Diseases, University Hospitals Leuven, Leuven, Belgium
| | - P Nijst
- Department of Cardiology, Ziekenhuis Oost-Limburg, Schiepse Bos 6, 3600 Genk, Belgium
| | - C De Deyne
- Faculty of Medicine and Life Sciences, University Hasselt, Diepenbeek, Belgium; Department of Anesthesiology and Critical Care Medicine, Ziekenhuis Oost-Limburg, Genk, Belgium
| | - D Verhaert
- Department of Cardiology, Ziekenhuis Oost-Limburg, Schiepse Bos 6, 3600 Genk, Belgium
| | - W Mullens
- Department of Cardiology, Ziekenhuis Oost-Limburg, Schiepse Bos 6, 3600 Genk, Belgium; Faculty of Medicine and Life Sciences, University Hasselt, Diepenbeek, Belgium
| | - J Dens
- Department of Cardiology, Ziekenhuis Oost-Limburg, Schiepse Bos 6, 3600 Genk, Belgium; Faculty of Medicine and Life Sciences, University Hasselt, Diepenbeek, Belgium
| | - M Dupont
- Department of Cardiology, Ziekenhuis Oost-Limburg, Schiepse Bos 6, 3600 Genk, Belgium; Faculty of Medicine and Life Sciences, University Hasselt, Diepenbeek, Belgium
| | - K Ameloot
- Department of Cardiology, Ziekenhuis Oost-Limburg, Schiepse Bos 6, 3600 Genk, Belgium; Department of Intensive Care Medicine, Ziekenhuisnetwerk Antwerpen, Campus Stuivenberg, Antwerp, Belgium; Faculty of Medicine and Life Sciences, University Hasselt, Diepenbeek, Belgium
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Toczylowska B, Zieminska E, Michałowska M, Chalimoniuk M, Fiszer U. Changes in the metabolic profiles of the serum and putamen in Parkinson's disease patients - In vitro and in vivo NMR spectroscopy studies. Brain Res 2020; 1748:147118. [PMID: 32931820 DOI: 10.1016/j.brainres.2020.147118] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Revised: 09/01/2020] [Accepted: 09/06/2020] [Indexed: 10/23/2022]
Abstract
The aim of this study was to investigate the relationship between serum metabolomic biomarkers and brain in vivo magnetic resonance spectroscopy (MRS) biomarkers in patients with Parkinson's disease (PD) as well as to investigate compound concentration changes by comparing the results with healthy control subjects. Univariate statistical analysis of the serum showed significant differences in the levels of phenylalanine, tyrosine, lysine, glutamine, glutamate, acetone, acetate, 3-hydroxybutyrate, and 1-monoacylglycerol (1-MAG) between the PD patient group and the control group. Orthogonal partial least squares discriminant analysis showed significantly different compound concentrations of acetate, 3-hydroxybutyrate, glutamine, tyrosine, 1-MAG and testosterone. In vivo MRS of the putamen showed significantly higher concentrations of glutamine/glutamate complex and glutamine in patients with PD in comparison to control subjects. Following disrupted metabolic pathways in patients with PD were identified: dopamine synthesis, steroid hormone biosynthesis, fatty acid biosynthesis, the synthesis and degradation of ketone bodies, the metabolism of pyruvate, arginine, proline, alanine, aspartate, glutamate, tyrosine and phenylalanine. The obtained results may indicate changes in neurotransmission, disturbances in energy production and an altered cell membrane structure.
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Affiliation(s)
- Beata Toczylowska
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Polish Academy of Sciences, 4 Ks. Trojdena st., 02-109 Warsaw, Poland
| | - Elzbieta Zieminska
- Mossakowski Medical Research Centre, Polish Academy of Sciences, 5 Pawinskiego st., 02-109 Warsaw, Poland.
| | - Małgorzata Michałowska
- Department of Neurology and Epileptology, Centre of Postgraduate Medical Education, Orlowski Hospital, 241 Czerniakowska st., 00-416 Warsaw, Poland
| | - Malgorzata Chalimoniuk
- Józef Piłsudski University of Physical Education in Warsaw Faculty in Biała Podlaska, 2 Akademicka st., 21-500 Biala Podlaska, Poland
| | - Urszula Fiszer
- Department of Neurology and Epileptology, Centre of Postgraduate Medical Education, Orlowski Hospital, 241 Czerniakowska st., 00-416 Warsaw, Poland
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Milej D, Shahid M, Abdalmalak A, Rajaram A, Diop M, St. Lawrence K. Characterizing dynamic cerebral vascular reactivity using a hybrid system combining time-resolved near-infrared and diffuse correlation spectroscopy. BIOMEDICAL OPTICS EXPRESS 2020; 11:4571-4585. [PMID: 32923065 PMCID: PMC7449704 DOI: 10.1364/boe.392113] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Revised: 04/28/2020] [Accepted: 05/12/2020] [Indexed: 05/09/2023]
Abstract
This study presents the characterization of dynamic cerebrovascular reactivity (CVR) in healthy adults by a hybrid optical system combining time-resolved (TR) near-infrared spectroscopy (NIRS) and diffuse correlation spectroscopy (DCS). Blood flow and oxygenation (oxy- and deoxy-hemoglobin) responses to a step hypercapnic challenge were recorded to characterize dynamic and static components of CVR. Data were acquired at short and long source-detector separations (r SD) to assess the impact of scalp hemodynamics, and moment analysis applied to the TR-NIRS to further enhance the sensitivity to the brain. Comparing blood flow and oxygenation responses acquired at short and long r SD demonstrated that scalp contamination distorted the CVR time courses, particularly for oxyhemoglobin. This effect was significantly diminished by the greater depth sensitivity of TR NIRS and less evident in the DCS data due to the higher blood flow in the brain compared to the scalp. The reactivity speed was similar for blood flow and oxygenation in the healthy brain. Given the ease-of-use, portability, and non-invasiveness of this hybrid approach, it is well suited to investigate if the temporal relationship between CBF and oxygenation is altered by factors such as age and cerebrovascular disease.
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Affiliation(s)
- Daniel Milej
- Imaging Program, Lawson Health Research Institute, London, Ontario, N6A 4V2, Canada
- Department of Medical Biophysics, Western University, London, Ontario, N6A 5C1, Canada
| | - Marwan Shahid
- Imaging Program, Lawson Health Research Institute, London, Ontario, N6A 4V2, Canada
- Department of Medical Biophysics, Western University, London, Ontario, N6A 5C1, Canada
| | - Androu Abdalmalak
- Imaging Program, Lawson Health Research Institute, London, Ontario, N6A 4V2, Canada
- Department of Medical Biophysics, Western University, London, Ontario, N6A 5C1, Canada
| | - Ajay Rajaram
- Imaging Program, Lawson Health Research Institute, London, Ontario, N6A 4V2, Canada
- Department of Medical Biophysics, Western University, London, Ontario, N6A 5C1, Canada
| | - Mamadou Diop
- Imaging Program, Lawson Health Research Institute, London, Ontario, N6A 4V2, Canada
- Department of Medical Biophysics, Western University, London, Ontario, N6A 5C1, Canada
| | - Keith St. Lawrence
- Imaging Program, Lawson Health Research Institute, London, Ontario, N6A 4V2, Canada
- Department of Medical Biophysics, Western University, London, Ontario, N6A 5C1, Canada
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Hippocampal Metabolite Profiles in Two Rat Models of Autism: NMR-Based Metabolomics Studies. Mol Neurobiol 2020; 57:3089-3105. [PMID: 32468248 PMCID: PMC7320041 DOI: 10.1007/s12035-020-01935-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Accepted: 05/13/2020] [Indexed: 12/22/2022]
Abstract
Autism spectrum disorders (ASDs) are increasingly being diagnosed. Hypotheses link ASD to genetic, epigenetic, or environmental factors. The role of oxidative stress and the imbalance between excitatory and inhibitory neurotransmission in the pathogenesis of ASD has been suggested. Rats in which ASD symptoms are induced by valproate (VPA) or thalidomide (THAL) application in utero are useful models in ASD studies. Our study investigated whether rats in ASD models show changes in metabolite levels in the brain consistent with the hypothetical pathomechanisms of ASD. Female rats were fed one dose of 800 mg/kg VPA or 500 mg/kg THAL orally on the 11th day of gestation, and 1-month offspring were used for the experiments. Metabolic profiles from proton nuclear magnetic resonance spectroscopy of hydrophilic and hydrophobic extracts of rat hippocampi were subjected to OPLS-DA statistical analysis. Large differences between both models in the content of several metabolites in the rat hippocampus were noticed. The following metabolic pathways were identified as being disturbed in both ASD models: steroid hormone biosynthesis; fatty acid biosynthesis; the synthesis and degradation of ketone bodies; glycerophospholipid metabolism; cholesterol metabolism; purine metabolism; arginine and proline metabolism; valine, leucine, and isoleucine biosynthesis and degradation. These results indicate disorders of energy metabolism, altered structure of cell membranes, changes in neurotransmission, and the induction of oxidative stress in the hippocampus. Our data, consistent with hypotheses of ASD pathomechanisms, may be useful in future ASD studies, especially for the interpretation of the results of metabolomics analysis of body fluids in rat ASD models.
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Broadband Time Domain Diffuse Optical Reflectance Spectroscopy: A Review of Systems, Methods, and Applications. APPLIED SCIENCES-BASEL 2019. [DOI: 10.3390/app9245465] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
This review presents recent developments and a wide overview of broadband time domain diffuse optical spectroscopy (TD-DOS). Various topics including physics of photon migration, advanced instrumentation, methods of analysis, applications covering multiple domains (tissue chromophore, in vivo studies, food, wood, pharmaceutical industry) are elaborated. The key role of standardization and recent studies in that direction are discussed. Towards the end, a brief outlook is presented on the current status and future trends in broadband TD-DOS.
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10
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Sawosz P, Kacprzak M, Pulawski P, Morawiec M, Bejm K, Bielacz M, Maniewski R, Liebert A, Dabrowski W. Influence of intra-abdominal pressure on the amplitude of fluctuations of cerebral hemoglobin concentration in the respiratory band. BIOMEDICAL OPTICS EXPRESS 2019; 10:3434-3446. [PMID: 31467788 PMCID: PMC6706036 DOI: 10.1364/boe.10.003434] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Revised: 05/04/2019] [Accepted: 05/17/2019] [Indexed: 05/15/2023]
Abstract
An intra-abdominal pressure (IAP) is correlated with cerebral perfusion, in a mechanism of reducing venous outflow. The elevated intra-abdominal pressure leads to an increase in the intracranial pressure and a decrease in the cerebral perfusion pressure. We studied the relationship between the IAP and the cerebral oxygenation with the use of the near infrared spectroscopy technique during a gynecological surgery. The changes in hemoglobin concentrations were analyzed in the time-frequency domain in the frequency band related to respiration. The measurements were carried out in 15 subjects who underwent laparoscopic surgery. During the laparoscopy, the intra-abdominal cavity was insufflated with CO2, which caused a controlled increase in the IAP. It was observed that the amplitudes of respiration-related waves present in hemoglobin concentration signals show an increase of 1.5 to 8.5 times during elevation of the IAP by 15 mmHg.
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Affiliation(s)
- Piotr Sawosz
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences, Warsaw, Poland
| | - Michal Kacprzak
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences, Warsaw, Poland
| | - Przemyslaw Pulawski
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences, Warsaw, Poland
| | - Magdalena Morawiec
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences, Warsaw, Poland
| | - Karolina Bejm
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences, Warsaw, Poland
| | - Magdalena Bielacz
- Institute of Tourism and Recreation, State Vocational College of Szymon Szymonowicz, Zamosc, Poland
| | - Roman Maniewski
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences, Warsaw, Poland
| | - Adam Liebert
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences, Warsaw, Poland
| | - Wojciech Dabrowski
- Department of Anesthesiology and Intensive Therapy, Medical University of Lublin, Lublin, Poland
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Wojtkiewicz S, Gerega A, Zanoletti M, Sudakou A, Contini D, Liebert A, Durduran T, Dehghani H. Self-calibrating time-resolved near infrared spectroscopy. BIOMEDICAL OPTICS EXPRESS 2019; 10:2657-2669. [PMID: 31149386 PMCID: PMC6524598 DOI: 10.1364/boe.10.002657] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2019] [Revised: 04/04/2019] [Accepted: 04/17/2019] [Indexed: 05/09/2023]
Abstract
Time-resolved near infrared spectroscopy is considered to be a gold standard technique when measuring absolute values of tissue optical properties, as it provides separable and independent information about both tissue absorption and scattering. However, time-resolved instruments require an accurate characterization by measuring the instrument response function in order to decouple the contribution of the instrument itself from the measurement. In this work, a new approach to the methodology of analysing time-resolved data is presented where the influence of instrument response function is eliminated from the data and a self-calibrating analysis is proposed. The proposed methodology requires an instrument to provide at least two wavelengths and allows spectral parameters recovery (optical properties or constituents concentrations and reduced scatter amplitude and power). Phantom and in-vivo data from two different time-resolved systems are used to validate the accuracy of the proposed self-calibrating approach, demonstrating that parameters recovery compared to the conventional curve fitting approach is within 10% and benefits from introducing a spectral constraint to the reconstruction problem. It is shown that a multi-wavelength time-resolved data can be used for parameters recovery directly without prior calibration (instrument response function measurement).
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Affiliation(s)
- Stanislaw Wojtkiewicz
- School of Computer Science, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
| | - Anna Gerega
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw, Trojdena 4, 02-109, Poland
| | - Marta Zanoletti
- Politecnico di Milano Dipartimento di Fisica, Piazza Leonardo Da Vinci 32, 20133, Milano, Italy
| | - Aleh Sudakou
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw, Trojdena 4, 02-109, Poland
| | - Davide Contini
- Politecnico di Milano Dipartimento di Fisica, Piazza Leonardo Da Vinci 32, 20133, Milano, Italy
| | - Adam Liebert
- Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw, Trojdena 4, 02-109, Poland
| | - Turgut Durduran
- ICFO - Institut de Ciències Fotòniques, The Barcelona Institute of Science and Technology, Castelldefels (Barcelona), Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain
| | - Hamid Dehghani
- School of Computer Science, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK
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12
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Clinical Brain Monitoring with Time Domain NIRS: A Review and Future Perspectives. APPLIED SCIENCES-BASEL 2019. [DOI: 10.3390/app9081612] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Near-infrared spectroscopy (NIRS) is an optical technique that can measure brain tissue oxygenation and haemodynamics in real-time and at the patient bedside allowing medical doctors to access important physiological information. However, despite this, the use of NIRS in a clinical environment is hindered due to limitations, such as poor reproducibility, lack of depth sensitivity and poor brain-specificity. Time domain NIRS (or TD-NIRS) can resolve these issues and offer detailed information of the optical properties of the tissue, allowing better physiological information to be retrieved. This is achieved at the cost of increased instrument complexity, operation complexity and price. In this review, we focus on brain monitoring clinical applications of TD-NIRS. A total of 52 publications were identified, spanning the fields of neonatal imaging, stroke assessment, traumatic brain injury (TBI) assessment, brain death assessment, psychiatry, peroperative care, neuronal disorders assessment and communication with patient with locked-in syndrome. In all the publications, the advantages of the TD-NIRS measurement to (1) extract absolute values of haemoglobin concentration and tissue oxygen saturation, (2) assess the reduced scattering coefficient, and (3) separate between extra-cerebral and cerebral tissues, are highlighted; and emphasize the utility of TD-NIRS in a clinical context. In the last sections of this review, we explore the recent developments of TD-NIRS, in terms of instrumentation and methodologies that might impact and broaden its use in the hospital.
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13
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Pan B, Huang C, Fang X, Huang X, Li T. Noninvasive and sensitive optical assessment of brain death. JOURNAL OF BIOPHOTONICS 2019; 12:e201800240. [PMID: 30379409 DOI: 10.1002/jbio.201800240] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2018] [Revised: 10/22/2018] [Accepted: 10/30/2018] [Indexed: 05/18/2023]
Abstract
Brain death is an irreversible loss of all brain functions, and the assessment is crucial for organ supply for transplantation. The noninvasive, sensitive, universally available and timely ancillary method to assess brain death has not been established. Here, we attempted to explore a noninvasive way in brain death assessment. Eighteen brain-dead patients and 20 healthy subjects were measured by near-infrared spectroscopy (NIRS), with a multiple-phase protocol at varied fraction of inspired O2 (FIO2 ). We found that the concentration changes ratios of oxyhemoglobin to deoxyhemoglobin (Δ[HbO2 ]/Δ[Hb]) in the cerebral cortex of brain-dead patients were significantly higher than those of healthy subjects. And, the Δ[HbO2 ]/Δ[Hb] in low-to-high FIO2 phase was most sensitive to distinguish brain-dead patients from healthy subjects, with a recommended threshold ranged in 1.40~1.50. The innovative incorporation of NIRS and a varied FIO2 protocol was shown to be a noninvasive and reliable way in assessing brain death. This successful attempt of NIRS application is a help for fast and accurate evaluation of brain death, promptly offering quality-assured donor organs and indicate us a protocol-aided way to expand the use of NIRS.
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Affiliation(s)
- Boan Pan
- Biomedical Engineering Institute, Chinese Academy of Medical Science and Peking Union Medical College, Tianjin, China
- State Key Lab Elect Thin Film & Integrated Device, University of Electronic Science and Technology of China, Chengdu, China
| | - Chong Huang
- Department of Biomedical Engineering, University of Kentucky, Lexington, Kentucky
| | - Xiang Fang
- Biomedical Engineering Institute, Chinese Academy of Medical Science and Peking Union Medical College, Tianjin, China
| | - Xiaobo Huang
- State Key Lab Elect Thin Film & Integrated Device, University of Electronic Science and Technology of China, Chengdu, China
| | - Ting Li
- Biomedical Engineering Institute, Chinese Academy of Medical Science and Peking Union Medical College, Tianjin, China
- State Key Lab Elect Thin Film & Integrated Device, University of Electronic Science and Technology of China, Chengdu, China
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14
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Pandey PC, Shukla S, Skoog SA, Boehm RD, Narayan RJ. Current Advancements in Transdermal Biosensing and Targeted Drug Delivery. SENSORS (BASEL, SWITZERLAND) 2019; 19:E1028. [PMID: 30823435 PMCID: PMC6427209 DOI: 10.3390/s19051028] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Revised: 02/19/2019] [Accepted: 02/21/2019] [Indexed: 01/10/2023]
Abstract
In this manuscript, recent advancements in the area of minimally-invasive transdermal biosensing and drug delivery are reviewed. The administration of therapeutic entities through the skin is complicated by the stratum corneum layer, which serves as a barrier to entry and retards bioavailability. A variety of strategies have been adopted for the enhancement of transdermal permeation for drug delivery and biosensing of various substances. Physical techniques such as iontophoresis, reverse iontophoresis, electroporation, and microneedles offer (a) electrical amplification for transdermal sensing of biomolecules and (b) transport of amphiphilic drug molecules to the targeted site in a minimally invasive manner. Iontophoretic delivery involves the application of low currents to the skin as well as the migration of polarized and neutral molecules across it. Transdermal biosensing via microneedles has emerged as a novel approach to replace hypodermic needles. In addition, microneedles have facilitated minimally invasive detection of analytes in body fluids. This review considers recent innovations in the structure and performance of transdermal systems.
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Affiliation(s)
- Prem C Pandey
- Department of Chemistry, Indian Institute of Technology (BHU), Varanasi 221005, India.
| | - Shubhangi Shukla
- Department of Chemistry, Indian Institute of Technology (BHU), Varanasi 221005, India.
| | - Shelby A Skoog
- Joint Department of Biomedical Engineering, University of North Carolina and North Carolina State University, Raleigh, NC 27695, USA.
| | - Ryan D Boehm
- Joint Department of Biomedical Engineering, University of North Carolina and North Carolina State University, Raleigh, NC 27695, USA.
| | - Roger J Narayan
- Joint Department of Biomedical Engineering, University of North Carolina and North Carolina State University, Raleigh, NC 27695, USA.
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Kacprzak M, Sawosz P, Weigl W, Milej D, Gerega A, Liebert A. Frequency analysis of oscillations in cerebral hemodynamics measured by time domain near infrared spectroscopy. BIOMEDICAL OPTICS EXPRESS 2019; 10:761-771. [PMID: 30800513 PMCID: PMC6377883 DOI: 10.1364/boe.10.000761] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2018] [Revised: 12/23/2018] [Accepted: 12/23/2018] [Indexed: 05/21/2023]
Abstract
In this paper, we propose the application of time-domain near-infrared spectroscopy to the assessment of oscillations in cerebral hemodynamics. These oscillations were observed in the statistical moments of the distributions of time of flight of photons (DTOFs) measured on the head. We analyzed the zeroth and second centralized moments of DTOFs (total number of photons and variance) to obtain their spectra to provide parameters for the frequency components of microcirculation, which differ between the extracerebral and intracerebral layers of the head. Analysis of these moments revealed statistically significant differences between a control group of healthy subjects and a group of patients with severe neurovascular disorders, which is a promising result for the assessment of cerebral microcirculation and cerebral autoregulation mechanisms.
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Affiliation(s)
- Michal Kacprzak
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences Trojdena 4, 02-109 Warsaw, Poland
| | - Piotr Sawosz
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences Trojdena 4, 02-109 Warsaw, Poland
| | - Wojciech Weigl
- Anesthesiology and Intensive Care, Department of Surgical Sciences, Uppsala University, Akademiska Hospital, 751 85 Uppsala, Sweden
| | - Daniel Milej
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences Trojdena 4, 02-109 Warsaw, Poland
- Department of Medical Biophysics, Western University, London, Ontario N6A 5C1, Canada
- Imaging Division, Lawson Health Research Institute, London, Ontario N6A 4V2, Canada
| | - Anna Gerega
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences Trojdena 4, 02-109 Warsaw, Poland
| | - Adam Liebert
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences Trojdena 4, 02-109 Warsaw, Poland
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Maillard J, Sologashvili T, Diaper J, Licker MJ, Keli Barcelos G. A Case of Persistence of Normal Tissue Oxygenation Monitored by Near-Infrared Spectroscopy (NIRS) Values Despite Prolonged Perioperative Cardiac Arrest. AMERICAN JOURNAL OF CASE REPORTS 2019; 20:21-25. [PMID: 30610182 PMCID: PMC6330994 DOI: 10.12659/ajcr.911399] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Patient: Male, 65 Final Diagnosis: Aortic dissection Symptoms: Hemiplegia • hypotension Medication:— Clinical Procedure: Emergent surgery Specialty: Surgery
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Affiliation(s)
- Julien Maillard
- Department of Anesthesiology, University Hospitals of Geneva, Geneva, Switzerland
| | - Tornike Sologashvili
- Department of Surgery, Division Cardiovascular Surgery, University Hospitals of Geneva, Geneva, Switzerland
| | - John Diaper
- Department of Anesthesiology, University Hospitals of Geneva, Geneva, Switzerland
| | - Marc-Joseph Licker
- Department of Anesthesiology, University Hospitals of Geneva, Geneva, Switzerland
| | - Gleicy Keli Barcelos
- Department of Anesthesiology, University Hospitals of Geneva, Geneva, Switzerland
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17
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Gerega A, Milej D, Weigl W, Kacprzak M, Liebert A. Multiwavelength time-resolved near-infrared spectroscopy of the adult head: assessment of intracerebral and extracerebral absorption changes. BIOMEDICAL OPTICS EXPRESS 2018; 9:2974-2993. [PMID: 29984079 PMCID: PMC6033559 DOI: 10.1364/boe.9.002974] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Revised: 04/27/2018] [Accepted: 05/17/2018] [Indexed: 05/23/2023]
Abstract
An optical technique based on diffuse reflectance measurement combined with indocyanine green (ICG) bolus tracking is extensively tested as a method for the clinical assessment of brain perfusion at the bedside. We report on multiwavelength time-resolved diffuse reflectance spectroscopy measurements carried out on the head of a healthy adult during the intravenous administration of a bolus of ICG. Intracerebral and extracerebral changes in absorption were estimated from an analysis of changes in statistical moments (total number of photons, mean time of flight and variance) of the distributions of times of flight (DTOF) of photons recorded simultaneously at 16 wavelengths from the range of 650-850 nm using sensitivity factors estimated by diffusion approximation based on a layered model of the studied medium. We validated the proposed method in a series of phantom experiments and in-vivo measurements. The results obtained show that changes in the concentration of the ICG can be assessed as a function of time of the experiment and depth in the tissue. Thus, the separation of changes in ICG concentration appearing in intra- and extracerebral tissues can be estimated from optical data acquired at a single source-detector pair of fibers/fiber bundles positioned on the surface of the head.
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Affiliation(s)
- Anna Gerega
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences Trojdena 4, 02-109 Warsaw, Poland
| | - Daniel Milej
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences Trojdena 4, 02-109 Warsaw, Poland
- Department of Medical Biophysics, Western University, London, Ontario N6A 5C1, Canada
- Imaging Division, Lawson Health Research Institute, London, Ontario N6A 4V2, Canada
| | - Wojciech Weigl
- Anesthesiology and Intensive Care, Department of Surgical Sciences, Uppsala University, Akademiska Hospital, 751 85 Uppsala, Sweden
| | - Michal Kacprzak
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences Trojdena 4, 02-109 Warsaw, Poland
| | - Adam Liebert
- Nalecz Institute of Biocybernetics and Biomedical Engineering Polish Academy of Sciences Trojdena 4, 02-109 Warsaw, Poland
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