Classification of Spatiotemporal Neural Activity Patterns in Brain Imaging Data

Improved spatio-temporal measurements of visually evoked fields using optically-pumped magnetometers

Recent developments in performance and practicality of optically-pumped magnetometers (OPMs) have enabled new capabilities in non-invasive brain function mapping through magnetoencephalography. In particular, the lack of cryogenic operating conditions allows for more flexible placement of sensor heads closer to the brain, leading to improved spatial resolution and source localisation capabilities. Through recording visually evoked brain fields (VEFs), we demonstrate that the closer sensor proximity can be exploited to improve temporal resolution. We use OPMs, and superconducting quantum interference devices (SQUIDs) for reference, to measure brain responses to flash and pattern reversal stimuli. We find highly reproducible signals with consistency across multiple participants, stimulus paradigms and sensor modalities. The temporal resolution advantage of OPMs is manifest in a twofold improvement, compared to SQUIDs. The capability for improved spatio-temporal signal tracing is illustrated by simultaneous vector recordings of VEFs in the primary and associative visual cortex, where a time lag on the order of 10–20 ms is consistently found. This paves the way for further spatio-temporal studies of neurophysiological signal tracking in visual stimulus processing, and other brain responses, with potentially far-reaching consequences for time-critical mapping of functionality in healthy and pathological brains.

Spatiotemporal characteristics in systems of diffusively coupled excitable slow-fast FitzHugh-Rinzel dynamical neurons

In this paper, we study an excitable, biophysical system that supports wave propagation of nerve impulses. We consider a slow-fast, FitzHugh-Rinzel neuron model where only the membrane voltage interacts diffusively, giving rise to the formation of spatiotemporal patterns. We focus on local, nonlinear excitations and diverse neural responses in an excitable one- and two-dimensional configuration of diffusively coupled FitzHugh-Rinzel neurons. The study of the emerging spatiotemporal patterns is essential in understanding the working mechanism in different brain areas. We derive analytically the coefficients of the amplitude equations in the vicinity of Hopf bifurcations and characterize various patterns, including spirals exhibiting complex geometric substructures. Furthermore, we derive analytically the condition for the development of antispirals in the neighborhood of the bifurcation point. The emergence of broken target waves can be observed to form spiral-like profiles. The spatial dynamics of the excitable system exhibits two- and multi-arm spirals for small diffusive couplings. Our results reveal a multitude of neural excitabilities and possible conditions for the emergence of spiral-wave formation. Finally, we show that the coupled excitable systems with different firing characteristics participate in a collective behavior that may contribute significantly to irregular neural dynamics.

Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mouse Visual Cortex

Recent breakthroughs in neuroanatomical tracing methods have helped unravel complicated neural connectivity in whole-brain tissue at single-cell resolution. However, in most cases, analysis of brain images remains dependent on highly subjective and sample-specific manual processing, preventing precise comparison across sample animals. In the present study, we introduce AMaSiNe, software for automated mapping of single neurons in the standard mouse brain atlas with annotated regions. AMaSiNe automatically calibrates misaligned and deformed slice samples to locate labeled neuronal positions from multiple brain samples into the standardized 3D Allen Mouse Brain Reference Atlas. We exploit the high fidelity and reliability of AMaSiNe to investigate the topographic structures of feedforward projections from the lateral geniculate nucleus to the primary visual area by reconstructing rabies-virus-injected brain slices in 3D space. Our results demonstrate that distinct organization of neural projections can be precisely mapped using AMaSiNe.