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Thomas G, Kay WT, Fones HN. Life on a leaf: the epiphyte to pathogen continuum and interplay in the phyllosphere. BMC Biol 2024; 22:168. [PMID: 39113027 PMCID: PMC11304629 DOI: 10.1186/s12915-024-01967-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Accepted: 08/01/2024] [Indexed: 08/11/2024] Open
Abstract
Epiphytic microbes are those that live for some or all of their life cycle on the surface of plant leaves. Leaf surfaces are a topologically complex, physicochemically heterogeneous habitat that is home to extensive, mixed communities of resident and transient inhabitants from all three domains of life. In this review, we discuss the origins of leaf surface microbes and how different biotic and abiotic factors shape their communities. We discuss the leaf surface as a habitat and microbial adaptations which allow some species to thrive there, with particular emphasis on microbes that occupy the continuum between epiphytic specialists and phytopathogens, groups which have considerable overlap in terms of adapting to the leaf surface and between which a single virulence determinant can move a microbial strain. Finally, we discuss the recent findings that the wheat pathogenic fungus Zymoseptoria tritici spends a considerable amount of time on the leaf surface, and ask what insights other epiphytic organisms might provide into this pathogen, as well as how Z. tritici might serve as a model system for investigating plant-microbe-microbe interactions on the leaf surface.
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Affiliation(s)
| | - William T Kay
- Department of Plant Sciences, University of Oxford, Oxford, UK
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Maciel JC, Costa MR, Ferreira EA, Oliveira IT, Alencar BTB, Zanuncio JC, Santos JB. Puccinia oxalidis Dietel & Ellis (1895): first report controlling oxalis latifolia kunth (Oxalidaceae) in systems of direct planting. BRAZ J BIOL 2021; 84:e249087. [PMID: 34932673 DOI: 10.1590/1519-6984.249087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 09/06/2021] [Indexed: 11/22/2022] Open
Affiliation(s)
- J C Maciel
- Universidade Federal dos Vales do Jequitinhonha e Mucuri - UFVJM, Departamento de Agronomia, Diamantina, MG, Brasil
| | - M R Costa
- Universidade Federal dos Vales do Jequitinhonha e Mucuri - UFVJM, Departamento de Agronomia, Diamantina, MG, Brasil
| | - E A Ferreira
- Universidade Federal de Minas Gerais - UFMG, Instituto de Ciências Agrárias, Montes Claros, MG, Brasil
| | - I T Oliveira
- Universidade Federal dos Vales do Jequitinhonha e Mucuri - UFVJM, Departamento de Agronomia, Diamantina, MG, Brasil
| | - B T B Alencar
- Universidade Federal dos Vales do Jequitinhonha e Mucuri - UFVJM, Departamento de Engenharia Florestal, Diamantina, MG, Brasil
| | - J C Zanuncio
- Universidade Federal de Viçosa - UFV, Departamento de Entomologia, Viçosa, MG, Brasil
| | - J B Santos
- Universidade Federal dos Vales do Jequitinhonha e Mucuri - UFVJM, Departamento de Agronomia, Diamantina, MG, Brasil
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Ueda H, Tabata J, Seshime Y, Masaki K, Sameshima-Yamashita Y, Kitamoto H. Cutinase-like biodegradable plastic-degrading enzymes from phylloplane yeasts have cutinase activity. Biosci Biotechnol Biochem 2021; 85:1890-1898. [PMID: 34160605 DOI: 10.1093/bbb/zbab113] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Accepted: 06/14/2021] [Indexed: 11/13/2022]
Abstract
Phylloplane yeast genera Pseudozyma and Cryptococcus secrete biodegradable plastic (BP)-degrading enzymes, termed cutinase-like enzymes (CLEs). Although CLEs contain highly conserved catalytic sites, the whole protein exhibits ≤30% amino acid sequence homology with cutinase. In this study, we analyzed whether CLEs exhibit cutinase activity. Seventeen Cryptococcus magnus strains, which degrade BP at 15 °C, were isolated from leaves and identified the DNA sequence of the CLE in one of the strains. Cutin was prepared from tomato leaves and treated with CLEs from 3 Cryptococcus species (C. magnus, Cryptococcus flavus, and Cryptococcus laurentii) and Pseudozyma antarctia (PaE). A typical cutin monomer, 10,16-dihydroxyhexadecanoic acid, was detected in extracts of the reaction solution via gas chromatography-mass spectrometry, showing that cutin was indeed degraded by CLEs. In addition to the aforementioned monomer, separation analysis via thin-layer chromatography detected high-molecular-weight products resulting from the breakdown of cutin by PaE, indicating that PaE acts as an endo-type enzyme.
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Affiliation(s)
- Hirokazu Ueda
- Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), Japan
| | - Jun Tabata
- Institute for Plant Protection, National Agriculture and Food Research Organization (NARO), Japan
| | - Yasuyo Seshime
- Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), Japan
| | | | - Yuka Sameshima-Yamashita
- Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), Japan
| | - Hiroko Kitamoto
- Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), Japan
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Chaudhry V, Runge P, Sengupta P, Doehlemann G, Parker JE, Kemen E. Shaping the leaf microbiota: plant-microbe-microbe interactions. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:36-56. [PMID: 32910810 PMCID: PMC8210630 DOI: 10.1093/jxb/eraa417] [Citation(s) in RCA: 74] [Impact Index Per Article: 24.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Accepted: 09/07/2020] [Indexed: 05/28/2023]
Abstract
The aerial portion of a plant, namely the leaf, is inhabited by pathogenic and non-pathogenic microbes. The leaf's physical and chemical properties, combined with fluctuating and often challenging environmental factors, create surfaces that require a high degree of adaptation for microbial colonization. As a consequence, specific interactive processes have evolved to establish a plant leaf niche. Little is known about the impact of the host immune system on phyllosphere colonization by non-pathogenic microbes. These organisms can trigger plant basal defenses and benefit the host by priming for enhanced resistance to pathogens. In most disease resistance responses, microbial signals are recognized by extra- or intracellular receptors. The interactions tend to be species specific and it is unclear how they shape leaf microbial communities. In natural habitats, microbe-microbe interactions are also important for shaping leaf communities. To protect resources, plant colonizers have developed direct antagonistic or host manipulation strategies to fight competitors. Phyllosphere-colonizing microbes respond to abiotic and biotic fluctuations and are therefore an important resource for adaptive and protective traits. Understanding the complex regulatory host-microbe-microbe networks is needed to transfer current knowledge to biotechnological applications such as plant-protective probiotics.
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Affiliation(s)
- Vasvi Chaudhry
- Department of Microbial Interactions, IMIT/ZMBP, University of
Tübingen, Tübingen, Germany
| | - Paul Runge
- Department of Microbial Interactions, IMIT/ZMBP, University of
Tübingen, Tübingen, Germany
- Max Planck Institute for Plant Breeding Research, Köln, Germany
| | - Priyamedha Sengupta
- Institute for Plant Sciences and Cluster of Excellence on Plant Sciences
(CEPLAS), University of Cologne, Center for Molecular Biosciences, Cologne,
Germany
| | - Gunther Doehlemann
- Institute for Plant Sciences and Cluster of Excellence on Plant Sciences
(CEPLAS), University of Cologne, Center for Molecular Biosciences, Cologne,
Germany
| | - Jane E Parker
- Max Planck Institute for Plant Breeding Research, Köln, Germany
- Institute for Plant Sciences and Cluster of Excellence on Plant Sciences
(CEPLAS), University of Cologne, Center for Molecular Biosciences, Cologne,
Germany
| | - Eric Kemen
- Department of Microbial Interactions, IMIT/ZMBP, University of
Tübingen, Tübingen, Germany
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Hu Z, Li J, Zhang Y, Shi Y. Determination of residue of diflufenican in wheat and soil by ultra-high-pressure liquid chromatography and mass spectrometry conditions. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2021; 101:215-219. [PMID: 32623721 DOI: 10.1002/jsfa.10633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Revised: 06/12/2020] [Accepted: 07/05/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND In order to clarify whether the application of diflufenican in the wheat field will produce residues in wheat plants and soil. In this experiment, ultra-high-pressure liquid chromatography was used to determine the residues of diflufenican in wheat plants, grains, and soil, which provided a new theoretical basis and technical guidance for the safe production of wheat. RESULTS The results showed that the average diflufenican recovery per added level in wheat and soil were in the range of 85.7% to 91.3%, relative standard deviations were all in a range of 2.43% to 6.00%, and the minimum detectable amount of diflufenican was 1.0 × 10-10 g kg-1 . With the increase of wheat growing days and soil layers, the residues of diflufenican in wheat plants and soil became lower. The order of residual amount of diflufenican in the growth period were heading period, flowering period, filling period and maturing period. The order of residual amount of diflufenican in different soil layers was 0-20, 20-40, 40-60, 60-80 and 80-100 cm respectively from the top to the bottom. In addition, with the increase of the dosage of diflufenican, the residual amount of diflufenican becomes higher. Thus, the residual amount of diflufenican after 2.0 times applied amount was higher than the 1.0 time applied amount. CONCLUSION The residual amounts of diflufenican in wheat and soil were very small, far below the value of the maximum residue limit (MRL) on wheat provided by China. Under the applied amount administered in this experiment, a single spray of diflufenican in wheat trifoliate is safe for wheat, humans and livestock. © 2020 Society of Chemical Industry.
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Affiliation(s)
- Zhanli Hu
- Dryland-Technology Key Laboratory of Shandong Province, College of Agronomy, Qingdao Agricultural University, Qingdao, China
| | - Jun Li
- Dryland-Technology Key Laboratory of Shandong Province, College of Agronomy, Qingdao Agricultural University, Qingdao, China
| | - Yezi Zhang
- Dryland-Technology Key Laboratory of Shandong Province, College of Agronomy, Qingdao Agricultural University, Qingdao, China
| | - Yan Shi
- Dryland-Technology Key Laboratory of Shandong Province, College of Agronomy, Qingdao Agricultural University, Qingdao, China
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Leveau JH. A brief from the leaf: latest research to inform our understanding of the phyllosphere microbiome. Curr Opin Microbiol 2019; 49:41-49. [PMID: 31707206 DOI: 10.1016/j.mib.2019.10.002] [Citation(s) in RCA: 59] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Revised: 10/03/2019] [Accepted: 10/04/2019] [Indexed: 01/05/2023]
Abstract
The plant leaf surface, or phyllosphere, represents a unique and challenging microbial biome with a diverse and dynamic community of commensal, parasitic, and mutualistic agents of microscopic proportions. This mini-review offers a digest of recently published research dedicated to the study of phyllosphere microbiota, framed in the context of processes and outcomes of microbial community assembly, structure, and (inter)activity in the phyllosphere, with particular focus on the contributions of environment, plant, and microbe, and on the potential benefits of interrogating those contributions at finer resolutions.
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Affiliation(s)
- Johan Hj Leveau
- Department of Plant Pathology, University of California, Davis, CA 95616, USA.
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Kitamoto H. The phylloplane yeast Pseudozyma: a rich potential for biotechnology. FEMS Yeast Res 2019; 19:5545191. [DOI: 10.1093/femsyr/foz053] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2019] [Accepted: 08/07/2019] [Indexed: 12/15/2022] Open
Abstract
ABSTRACT
Basidiomycetous yeast Pseudozyma strains are often isolated from leaf surfaces. Here, we describe the sources of Pseudozyma yeasts and their useful secreted products, including enzymes and biosurfactants. We then outline the life of Pseudozyma on the leaf surface and introduce studies to verify ecological functions of their useful products. In addition, the function of Pseudozyma in maintaining the health of plants is briefly explained. Finally, the gene manipulation techniques necessary for future research and development of technological applications of Pseudozyma are described.
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Affiliation(s)
- Hiroko Kitamoto
- Institute for Agro-Environmental Sciences, National Agriculture and Food Research Organization (NARO), 3-1-3 Kannondai, Tsukuba, Ibaraki 305-8604, Japan
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