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Kırdök E, Kashuba N, Damlien H, Manninen MA, Nordqvist B, Kjellström A, Jakobsson M, Lindberg AM, Storå J, Persson P, Andersson B, Aravena A, Götherström A. Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals. Sci Rep 2024; 13:22125. [PMID: 38238372 PMCID: PMC10796427 DOI: 10.1038/s41598-023-48762-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Accepted: 11/30/2023] [Indexed: 01/22/2024] Open
Abstract
Prehistoric chewed pitch has proven to be a useful source of ancient DNA, both from humans and their microbiomes. Here we present the metagenomic analysis of three pieces of chewed pitch from Huseby Klev, Sweden, that were dated to 9,890-9,540 before present. The metagenomic profile exposes a Mesolithic oral microbiome that includes opportunistic oral pathogens. We compared the data with healthy and dysbiotic microbiome datasets and we identified increased abundance of periodontitis-associated microbes. In addition, trained machine learning models predicted dysbiosis with 70-80% probability. Moreover, we identified DNA sequences from eukaryotic species such as red fox, hazelnut, red deer and apple. Our results indicate a case of poor oral health during the Scandinavian Mesolithic, and show that pitch pieces have the potential to provide information on material use, diet and oral health.
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Affiliation(s)
- Emrah Kırdök
- Department of Biotechnology, Faculty of Science, Mersin University, 33100 Yenişehir, Mersin, Turkey.
| | - Natalija Kashuba
- Department of Archaeology and Ancient History, Uppsala University, Engelska Parken, Thunbergsvägen 3H Box 626, 751 26, Uppsala, Sweden
| | - Hege Damlien
- Museum of Cultural History, University of Oslo, St. Olavs Plass, P.O. Box 6762, NO-0130, Oslo, Norway
| | - Mikael A Manninen
- PAES, Ecosystems and Environment Research Programme, Faculty of Biological and Environmental Sciences and Helsinki Institute of Sustainability Science, University of Helsinki, Viikinkaari 1, P.O. Box 65, Helsinki, Finland
| | - Bengt Nordqvist
- Foundation War-Booty Site Finnestorp, Klarinettvägen 75, 434 75, Kungsbacka, Sweden
| | - Anna Kjellström
- Department of Archaeology and Classical Studies, Osteoarchaeological Research Laboratory, Stockholm University, Stockholm, Sweden
| | - Mattias Jakobsson
- Department of Organismal Biology, Human Evolution, Uppsala University, Evolutionsbiologiskt Centrum EBC Norbyvägen 18 A, Uppsala, Sweden
| | - A Michael Lindberg
- Department of Chemistry and Biomedical Sciences, Faculty of Health and Life Sciences, Linnaeus University, Hus Vita, 44018, Kalmar, Sweden
| | - Jan Storå
- Department of Archaeology and Classical Studies, Osteoarchaeological Research Laboratory, Stockholm University, Stockholm, Sweden
| | - Per Persson
- Museum of Cultural History, University of Oslo, St. Olavs Plass, P.O. Box 6762, NO-0130, Oslo, Norway
| | - Björn Andersson
- Department of Cell and Molecular Biology (CMB), Karolinska Insitutet, P.O. Box 285, 171 77, Stockholm, Sweden
| | - Andrés Aravena
- Department of Molecular Biology and Genetics, Faculty of Science, Istanbul University, Vezneciler, 34134, Istanbul, Turkey
| | - Anders Götherström
- Centre for Palaeogenetics, Svante Arrhenius Väg 20C, 106 91, Stockholm, Sweden
- Department of Archaeology and Classical Studies, Archaeological Research Laboratory, Stockholm University, Stockholm, Sweden
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Magnesium whitlockite - omnipresent in pathological mineralisation of soft tissues but not a significant inorganic constituent of bone. Acta Biomater 2021; 125:72-82. [PMID: 33610767 DOI: 10.1016/j.actbio.2021.02.021] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Revised: 01/26/2021] [Accepted: 02/12/2021] [Indexed: 01/03/2023]
Abstract
Whitlockite is a calcium phosphate that was first identified in minerals collected from the Palermo Quarry, New Hampshire. The terms magnesium whitlockite [Mg-whitlockite; Ca18Mg2(HPO4)2(PO4)12] and beta-tricalcium phosphate [β-TCP; β-Ca3(PO4)2] are often used interchangeably since Mg-whitlockite is not easily distinguished from β-Ca3(PO4)2 by powder X-ray diffraction although their crystalline structures differ significantly. Being both osteoconductive and bioresorbable, Mg-whitlockite is pursued as a synthetic bone graft substitute. In recent years, advances in development of synthetic Mg-whitlockite have been accompanied by claims that Mg-whitlockite is the second most abundant inorganic constituent of bone, occupying as much as 20-35 wt% of the inorganic fraction. To find evidence in support of this notion, this review presents an exhaustive summary of Mg-whitlockite identification in biological tissues. Mg-whitlockite is mainly found in association with pathological mineralisation of various soft tissues and dental calculus, and occasionally with enamel and dentine. With the exception of high-temperature treated tumoural calcified deposits around interphalangeal and metacarpal joints and rhomboidal Mg-whitlockite crystals in post-apoptotic osteocyte lacunae in human alveolar bone, this unusual mineral has never been detected in the extracellular matrix of mammalian bone. Characterisation techniques capable of unequivocally distinguishing between different calcium phosphate phases, such as high-resolution imaging, crystallography, and/or spectroscopy have exclusively identified bone mineral as poorly crystalline, ion-substituted, carbonated apatite. The idea that Mg-whitlockite is a significant constituent of bone mineral remains unsubstantiated. Contrary to claims that such biomaterials represent a bioinspired/biomimetic approach to bone repair, Mg-whitlockite remains, exclusively, a pathological biomineral. STATEMENT OF SIGNIFICANCE: Magnesium whitlockite (Mg-whitlockite) is a unique calcium phosphate that typically features in pathological calcification of soft tissues; however, an alarming trend emerging in the synthetic bioceramics community claims that Mg-whitlockite occupies 20-35 wt% of bone mineral and therefore synthetic Mg-whitlockite represents a biomimetic approach towards bone regeneration. By providing an overview of Mg-whitlockite detection in biological tissues and scrutinising a diverse cross-section of literature relevant to bone composition analysis, this review concludes that Mg-whitlockite is exclusively a pathological biomineral, and having never been reported in bone extracellular matrix, Mg-whitlockite does not constitute a biomimetic strategy for bone repair.
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Connolly R, Jambrina-Enríquez M, Herrera-Herrera AV, Mallol C. Investigating Hydrogen Isotope Variation during Heating of n-Alkanes under Limited Oxygen Conditions: Implications for Palaeoclimate Reconstruction in Archaeological Settings. Molecules 2021; 26:molecules26071830. [PMID: 33805066 PMCID: PMC8037755 DOI: 10.3390/molecules26071830] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 03/20/2021] [Accepted: 03/21/2021] [Indexed: 11/16/2022] Open
Abstract
This paper reports on a series of heating experiments that focus on n-alkanes extracted from leaf, bark, and xylem tissues of the Celtis australis plant. These lipid biomarkers were analysed for their compound-specific hydrogen isotopic composition (δ2Hwax) under limited oxygen conditions at 150, 250, 350, and 450 °C. Our results reveal isotopic variations in wax lipids of different plant organs during short-term low-temperature combustion. We conclude that, in the absence of a detailed characterisation of the depositional environment in advance of sampling, δ2Hwax values in archaeological or otherwise highly anthropogenic environments should be interpreted cautiously. In addition, we observed that variation in δ2Hwax of leaves is minimal at temperatures ≤ 350 °C, highlighting the potential for δ2Hwax in thermally altered combustion substrates to yield palaeoclimate information, which could allow researchers to investigate links between archaeological and climatic records at a high spatial and temporal resolution.
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Affiliation(s)
- Rory Connolly
- Instituto Universitario de Bio-Organica Antonio Gonzalez (IUBO), Universidad de La Laguna, 38206 Canary Islands, Spain; (R.C.); (M.J.-E.); (A.V.H.-H.)
- Departmento de Geografia e Historia, Universidad de La Laguna, 38200 Canary Islands, Spain
| | - Margarita Jambrina-Enríquez
- Instituto Universitario de Bio-Organica Antonio Gonzalez (IUBO), Universidad de La Laguna, 38206 Canary Islands, Spain; (R.C.); (M.J.-E.); (A.V.H.-H.)
- Departamento de Biología Animal, Edafología y Geología, Facultad de Ciencias, Universidad de La Laguna, 38200 Canary Islands, Spain
| | - Antonio V. Herrera-Herrera
- Instituto Universitario de Bio-Organica Antonio Gonzalez (IUBO), Universidad de La Laguna, 38206 Canary Islands, Spain; (R.C.); (M.J.-E.); (A.V.H.-H.)
| | - Carolina Mallol
- Instituto Universitario de Bio-Organica Antonio Gonzalez (IUBO), Universidad de La Laguna, 38206 Canary Islands, Spain; (R.C.); (M.J.-E.); (A.V.H.-H.)
- Departmento de Geografia e Historia, Universidad de La Laguna, 38200 Canary Islands, Spain
- Interdisciplinary Center for Archaeology and the Evolution of Human Behaviour (ICArEHB), Universidade do Algarve, Campus de Gambelas, Edificio 1, 8005-139 Faro, Portugal
- Correspondence:
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Recent Advancement of the Sensors for Monitoring the Water Quality Parameters in Smart Fisheries Farming. COMPUTERS 2021. [DOI: 10.3390/computers10030026] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Water quality is the most critical factor affecting fish health and performance in aquaculture production systems. Fish life is mostly dependent on the water fishes live in for all their needs. Therefore, it is essential to have a clear understanding of the water quality requirements of the fish. This research discusses the critical water parameters (temperature, pH, nitrate, phosphate, calcium, magnesium, and dissolved oxygen (DO)) for fisheries and reviews the existing sensors to detect those parameters. Moreover, this paper proposes a prospective solution for smart fisheries that will help to monitor water quality factors, make decisions based on the collected data, and adapt more quickly to changing conditions.
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