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Kohout P, Sudová R, Odriozola I, Kvasničková J, Petružálková M, Hadincová V, Krahulec F, Pecháčková S, Skálová H, Herben T. Accumulation of pathogens in soil microbiome can explain long-term fluctuations of legumes in a grassland community. THE NEW PHYTOLOGIST 2024; 244:235-248. [PMID: 39101271 DOI: 10.1111/nph.20031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Accepted: 07/18/2024] [Indexed: 08/06/2024]
Abstract
All plant populations fluctuate in time. Apart from the dynamics imposed by external forces such as climate, these fluctuations can be driven by endogenous processes taking place within the community. In this study, we aimed to identify potential role of soil-borne microbial communities in driving endogenous fluctuations of plant populations. We combined a unique, 35-yr long abundance data of 11 common plant species from a species-rich mountain meadow with development of their soil microbiome (pathogenic fungi, arbuscular mycorrhizal fungi and oomycetes) observed during 4 yr of experimental cultivation in monocultures. Plant species which abundance fluctuated highly in the field (particularly legumes) accumulated plant pathogens in their soil mycobiome. We also identified increasing proportion of mycoparasitic fungi under highly fluctuating legume species, which may indicate an adaptation of these species to mitigate the detrimental effects of pathogens. Our study documented that long-term fluctuations in the abundance of plant species in grassland communities can be explained by the accumulation of plant pathogens in plant-soil microbiome. By contrast, we found little evidence of the role of mutualists in plant population fluctuations. These findings offer new insights for understanding mechanisms driving both long-term vegetation dynamics and patterns of species coexistence and richness.
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Affiliation(s)
- Petr Kohout
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia
- Faculty of Science, Charles University in Prague, Albertov 6, 128 00, Prague, Czechia
| | - Radka Sudová
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - Iñaki Odriozola
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia
| | - Jana Kvasničková
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague, Czechia
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - Markéta Petružálková
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - Věroslava Hadincová
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - František Krahulec
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - Sylvie Pecháčková
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - Hana Skálová
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
| | - Tomáš Herben
- Faculty of Science, Charles University in Prague, Albertov 6, 128 00, Prague, Czechia
- Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43, Průhonice, Czechia
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Wang C, Wang H, Yuan S. Precipitation governing vegetation patterns in an arid or semi-arid environment. J Math Biol 2023; 87:22. [PMID: 37395848 DOI: 10.1007/s00285-023-01954-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Revised: 05/15/2023] [Accepted: 06/15/2023] [Indexed: 07/04/2023]
Abstract
In an arid or semi-arid environment, precipitation plays a vital role in vegetation growth. Recent researches reveal that the response of vegetation growth to precipitation has a lag effect. To explore the mechanism behind the lag phenomenon, we propose and investigate a water-vegetation model with spatiotemporal nonlocal effects. It is shown that the temporal kernel function does not affect Turing bifurcation. For better understanding the influences of lag effect and nonlocal competition on the vegetation pattern formation, we choose some special kernel functions and obtain some insightful results: (i) Time delay does not trigger the vegetation pattern formation, but can postpone the evolution of vegetation. In addition, in the absence of diffusion, time delay can induce the occurrence of stability switches, while in the presence of diffusion, spatially nonhomogeneous time-periodic solutions may emerge, but there are no stability switches; (ii) The spatial nonlocal interaction may trigger the pattern onset for small diffusion ratio of water and vegetation, and can change the number and size of isolated vegetation patches for large diffusion ratio. (iii) The interaction between time delay and spatial nonlocal competition may induce the emergence of traveling wave patterns, so that the vegetation remains periodic in space, but is oscillating in time. These results demonstrate that precipitation can significantly affect the growth and spatial distribution of vegetation.
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Affiliation(s)
- Cuihua Wang
- University of Shanghai for Science and Technology, Shanghai, 200093, People's Republic of China
| | - Hao Wang
- Department of Mathematical and Statistical Sciences, University of Alberta, Edmonton, AB, T6G2G1, Canada
| | - Sanling Yuan
- University of Shanghai for Science and Technology, Shanghai, 200093, People's Republic of China.
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Al Saadi F, Parra-Rivas P. Transitions between dissipative localized structures in the simplified Gilad-Meron model for dryland plant ecology. CHAOS (WOODBURY, N.Y.) 2023; 33:033129. [PMID: 37003806 DOI: 10.1063/5.0133576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Accepted: 02/15/2023] [Indexed: 06/19/2023]
Abstract
Spatially extended patterns and multistability of possible different states are common in many ecosystems, and their combination has an important impact on their dynamical behaviors. One potential combination involves tristability between a patterned state and two different uniform states. Using a simplified version of the Gilad-Meron model for dryland ecosystems, we study the organization, in bifurcation terms, of the localized structures arising in tristable regimes. These states are generally related to the concept of wave front locking and appear in the form of spots and gaps of vegetation. We find that the coexistence of localized spots and gaps, within tristable configurations, yields the appearance of hybrid states. We also study the emergence of spatiotemporal localized states consisting of a portion of a periodic pattern embedded in a uniform Hopf-like oscillatory background in a subcritical Turing-Hopf dynamical regime.
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Affiliation(s)
- Fahad Al Saadi
- Department of Systems Engineering, Military Technological College, Muscat, Oman
| | - Pedro Parra-Rivas
- Dipartimento di Ingegneria dell'Informazione, Elettronica e Telecomunicazioni, Sapienza Universitá di Roma, via Eudossiana 18, 00184 Rome, Italy
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Makris KC, Charisiadis P, Delplancke T, Efthymiou N, Giuliani A. Diurnal Nonlinear Recurrence Metrics of Skin Temperature and Their Association with Metabolic Hormones in Contrasting Climate Settings: A Randomized Cross-Over Trial. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:15195. [PMID: 36429912 PMCID: PMC9690349 DOI: 10.3390/ijerph192215195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/10/2022] [Revised: 11/04/2022] [Accepted: 11/08/2022] [Indexed: 06/16/2023]
Abstract
The urban overheating phenomenon in Mediterranean cities is a societal challenge with vast implications for the protection of public health. An additional analysis of the pilot TEMP randomized 2 × 2 cross-over trial was set up, using wearable sensor-based skin temperature measurements (n = 14). The study objectives were to: (i) assess the recurrence patterns of skin temperature measurements in individuals spending time in two climatologically contrasting settings (urban versus mountainous), and (ii) evaluate the association between the diurnal nonlinear recurrence quantification analysis (RQA) metrics and metabolic hormone levels. The intervention was a short-term stay (5-7 days) in a mountainous, climate-cooler setting (range 600-900 m altitude), which is about a 1 h drive from the main urban centres of Cyprus. The RQA analysis showed a blunting phenomenon on the nonlinear temporal dynamics of skin temperature time series observed in the urban setting. Compared with the mountainous setting, a more stable (and thus less adaptive) profile of skin temperature dynamics in the urban setting appeared, being less deterministic and with a smaller degree of complexity. No significant (p > 0.05) associations were observed between the leptin or cortisol and any of the skin temperature dynamical descriptors. However, there were marginal associations between the adiponectin and laminarity (beta = 0.24, 95%CI: -0.02, 0.50, p = 0.07) and with determinism (beta = 0.23, 95%CI: -0.037, 0.50, p = 0.09). We found dysregulations in skin temperature temporal dynamics of the study population while residing in the urban setting when compared with the cooler mountainous setting; these dysregulations took the form of reduced cycle duration and complexity, while skin temperature dynamics became less responsive to perturbations and less regular in magnitude. More research is needed to better understand heat stress temporal dynamics and their influence on human health. Trial registration: This trial is registered with ClinicalTrials.gov; number: NCT03625817.
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Affiliation(s)
- Konstantinos C. Makris
- Cyprus International Institute for Environmental and Public Health, Cyprus University of Technology, 3041 Limassol, Cyprus
| | - Pantelis Charisiadis
- Cyprus International Institute for Environmental and Public Health, Cyprus University of Technology, 3041 Limassol, Cyprus
| | - Thibaut Delplancke
- Cyprus International Institute for Environmental and Public Health, Cyprus University of Technology, 3041 Limassol, Cyprus
| | - Nikolaos Efthymiou
- Cyprus International Institute for Environmental and Public Health, Cyprus University of Technology, 3041 Limassol, Cyprus
| | - Alessandro Giuliani
- Environment and Health Department, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161 Rome, Italy
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Belowground feedbacks as drivers of spatial self-organization and community assembly. Phys Life Rev 2021; 38:1-24. [PMID: 34334324 DOI: 10.1016/j.plrev.2021.07.002] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2021] [Accepted: 07/12/2021] [Indexed: 02/03/2023]
Abstract
Vegetation patterning in water-limited and other resource-limited ecosystems highlights spatial self-organization processes as potentially key drivers of community assembly. These processes provide insight into predictable landscape-level relationships between organisms and their abiotic environment in the form of regular and irregular patterns of biota and resources. However, two aspects have largely been overlooked; the roles played by plant - soil-biota feedbacks and allelopathy in spatial self-organization, and their potential contribution, along with plant-resource feedbacks, to community assembly through spatial self-organization. Here, we expand the drivers of spatial self-organization from a focus on plant-resource feedbacks to include plant - soil-biota feedbacks and allelopathy, and integrate concepts of nonlinear physics and community ecology to generate a new hypothesis. According to this hypothesis, below-ground processes can affect community assemblages through two types of spatial self-organization, global and local. The former occurs simultaneously across whole ecosystems, leading to self-organized patterns of biota, allelochemicals and resources, and niche partitioning. The latter occurs locally in ecotones, and determines ecotone structure and motion, invasion dynamics, and species coexistence. Studies of the two forms of spatial self-organization are important for understanding the organization of plant communities in drier climates which are likely to involve spatial patterning or re-patterning. Such studies are also important for developing new practices of ecosystem management, based on local manipulations at ecotones, to slow invasion dynamics or induce transitions from transitive to intransitive networks of interspecific interactions which increase species diversity.
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Edri Y, Meron E, Yochelis A. Spatial heterogeneity may form an inverse camel shaped Arnol'd tongue in parametrically forced oscillations. CHAOS (WOODBURY, N.Y.) 2020; 30:023120. [PMID: 32113250 DOI: 10.1063/1.5130618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2019] [Accepted: 01/23/2020] [Indexed: 06/10/2023]
Abstract
Frequency locking in forced oscillatory systems typically organizes in "V"-shaped domains in the plane spanned by the forcing frequency and amplitude, the so-called Arnol'd tongues. Here, we show that if the medium is spatially extended and monotonically heterogeneous, e.g., through spatially dependent natural frequency, the resonance tongues can also display "U" and "W" shapes; we refer to the latter as an "inverse camel" shape. We study the generic forced complex Ginzburg-Landau equation for damped oscillations under parametric forcing and, using linear stability analysis and numerical simulations, uncover the mechanisms that lead to these distinct resonance shapes. Additionally, we study the effects of discretization by exploring frequency locking of oscillator chains. Since we study a normal-form equation, the results are model-independent near the onset of oscillations and, therefore, applicable to inherently heterogeneous systems in general, such as the cochlea. The results are also applicable to controlling technological performances in various contexts, such as arrays of mechanical resonators, catalytic surface reactions, and nonlinear optics.
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Affiliation(s)
- Yuval Edri
- Department of Solar Energy and Environmental Physics, Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben-Gurion 8499000, Israel
| | - Ehud Meron
- Department of Solar Energy and Environmental Physics, Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben-Gurion 8499000, Israel
| | - Arik Yochelis
- Department of Solar Energy and Environmental Physics, Blaustein Institutes for Desert Research (BIDR), Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben-Gurion 8499000, Israel
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Tzuk O, Ujjwal SR, Fernandez-Oto C, Seifan M, Meron E. Period doubling as an indicator for ecosystem sensitivity to climate extremes. Sci Rep 2019; 9:19577. [PMID: 31862940 PMCID: PMC6925204 DOI: 10.1038/s41598-019-56080-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Accepted: 11/13/2019] [Indexed: 11/21/2022] Open
Abstract
The predictions for a warmer and drier climate and for increased likelihood of climate extremes raise high concerns about the possible collapse of dryland ecosystems, and about the formation of new drylands where native species are less tolerant to water stress. Using a dryland-vegetation model for plant species that display different tradeoffs between fast growth and tolerance to droughts, we find that ecosystems subjected to strong seasonal variability, typical for drylands, exhibit a temporal period-doubling route to chaos that results in early collapse to bare soil. We further find that fast-growing plants go through period doubling sooner and span wider chaotic ranges than stress-tolerant plants. We propose the detection of period-doubling signatures in power spectra as early indicators of ecosystem collapse that outperform existing indicators in their ability to warn against climate extremes and capture the heightened vulnerability of newly-formed drylands. The proposed indicator is expected to apply to other types of ecosystems, such as consumer–resource and predator–prey systems. We conclude by delineating the conditions ecosystems should meet in order for the proposed indicator to apply.
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Affiliation(s)
- Omer Tzuk
- Department of Physics, Ben-Gurion University of the Negev, Beer-Sheva, 8410501, Israel.
| | - Sangeeta Rani Ujjwal
- Department of Solar Energy and Environmental Physics, SIDEER, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben-Gurion, 8499000, Israel
| | - Cristian Fernandez-Oto
- Department of Solar Energy and Environmental Physics, SIDEER, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben-Gurion, 8499000, Israel.,Complex Systems Group, Facultad de Ingeniería y Ciencias Aplicadas, Universidad de los Andes, Av. Mon. Alvaro del Portillo 12.455, Santiago, Chile
| | - Merav Seifan
- Mitrani Department of Desert Ecology, SIDEER, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben-Gurion, 8499000, Israel
| | - Ehud Meron
- Department of Physics, Ben-Gurion University of the Negev, Beer-Sheva, 8410501, Israel.,Department of Solar Energy and Environmental Physics, SIDEER, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben-Gurion, 8499000, Israel
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Eigentler L, Sherratt JA. Metastability as a Coexistence Mechanism in a Model for Dryland Vegetation Patterns. Bull Math Biol 2019; 81:2290-2322. [PMID: 31012031 DOI: 10.1007/s11538-019-00606-z] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2018] [Accepted: 04/11/2019] [Indexed: 11/25/2022]
Abstract
Vegetation patterns are a ubiquitous feature of water-deprived ecosystems. Despite the competition for the same limiting resource, coexistence of several plant species is commonly observed. We propose a two-species reaction-diffusion model based on the single-species Klausmeier model, to analytically investigate the existence of states in which both species coexist. Ecologically, the study finds that coexistence is supported if there is a small difference in the plant species' average fitness, measured by the ratio of a species' capabilities to convert water into new biomass to its mortality rate. Mathematically, coexistence is not a stable solution of the system, but both spatially uniform and patterned coexistence states occur as metastable states. In this context, a metastable solution in which both species coexist corresponds to a long transient (exceeding [Formula: see text] years in dimensional parameters) to a stable one-species state. This behaviour is characterised by the small size of a positive eigenvalue which has the same order of magnitude as the average fitness difference between the two species. Two mechanisms causing the occurrence of metastable solutions are established: a spatially uniform unstable equilibrium and a stable one-species pattern which is unstable to the introduction of a competitor. We further discuss effects of asymmetric interspecific competition (e.g. shading) on the metastability property.
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Affiliation(s)
- Lukas Eigentler
- Department of Mathematics, Maxwell Institute for Mathematical Sciences, Heriot-Watt University, Edinburgh, EH14 4AS, UK.
| | - Jonathan A Sherratt
- Department of Mathematics, Maxwell Institute for Mathematical Sciences, Heriot-Watt University, Edinburgh, EH14 4AS, UK
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