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Oestreich WK, Oliver RY, Chapman MS, Go MC, McKenna MF. Listening to animal behavior to understand changing ecosystems. Trends Ecol Evol 2024:S0169-5347(24)00145-9. [PMID: 38972787 DOI: 10.1016/j.tree.2024.06.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 06/11/2024] [Accepted: 06/14/2024] [Indexed: 07/09/2024]
Abstract
Interpreting sound gives powerful insight into the health of ecosystems. Beyond detecting the presence of wildlife, bioacoustic signals can reveal their behavior. However, behavioral bioacoustic information is underused because identifying the function and context of animals' sounds remains challenging. A growing acoustic toolbox is allowing researchers to begin decoding bioacoustic signals by linking individual and population-level sensing. Yet, studies integrating acoustic tools for behavioral insight across levels of biological organization remain scarce. We aim to catalyze the emerging field of behavioral bioacoustics by synthesizing recent successes and rising analytical, logistical, and ethical challenges. Because behavior typically represents animals' first response to environmental change, we posit that behavioral bioacoustics will provide theoretical and applied insights into animals' adaptations to global change.
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Affiliation(s)
| | - Ruth Y Oliver
- Bren School of Environmental Science and Management, University of California Santa Barbara, Santa Barbara, CA, USA
| | - Melissa S Chapman
- National Center for Ecological Analysis and Synthesis, University of California Santa Barbara, Santa Barbara, CA, USA
| | - Madeline C Go
- Monterey Bay Aquarium Research Institute, Moss Landing, CA, USA
| | - Megan F McKenna
- Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, CO, USA
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Markolf M, Zinowsky M, Keller JK, Borys J, Cillov A, Schülke O. Toward Passive Acoustic Monitoring of Lemurs: Using an Affordable Open-Source System to Monitor Phaner Vocal Activity and Density. INT J PRIMATOL 2022. [DOI: 10.1007/s10764-022-00285-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
AbstractDeveloping new cost-effective methods for monitoring the distribution and abundance of species is essential for conservation biology. Passive acoustic monitoring (PAM) has long been used in marine mammals and has recently been postulated to be a promising method to improve monitoring of terrestrial wildlife as well. Because Madagascar’s lemurs are among the globally most threatened taxa, this study was designed to assess the applicability of an affordable and open-source PAM device to estimate the density of pale fork-marked lemurs (Phaner pallescens). Using 12 playback experiments and one fixed transect of four automated acoustic recorders during one night of the dry season in Kirindy Forest, we experimentally estimated the detection space for Phaner and other lemur vocalizations. Furthermore, we manually annotated more than 10,000 vocalizations of Phaner from a single location and used bout rates from previous studies to estimate density within the detection space. To truncate detections beyond 150 m, we applied a sound pressure level (SPL) threshold filtering out vocalizations below SPL 50 (dB re 20 μPa). During the dry season, vocalizations of Phaner can be detected with confidence beyond 150 m by a human listener. Within our fixed truncated detection area corresponding to an area of 0.07 km2 (detection radius of 150 m), we estimated 10.5 bouts per hour corresponding to a density of Phaner of 38.6 individuals/km2. Our density estimates are in line with previous estimates based on individually marked animals conducted in the same area. Our findings suggest that PAM also could be combined with distance sampling methods to estimate densities. We conclude that PAM is a promising method to improve the monitoring and conservation of Phaner and many other vocally active primates.
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Zhang L, Li C, Zhai Y, Feng L, Bai K, Zhang Z, Huang Y, Li T, Li D, Li H, Cui P, Chen D, Wang H, Yang X. Analysis of the vaginal microbiome of giant pandas using metagenomics sequencing. Microbiologyopen 2020; 9:e1131. [PMID: 33205903 PMCID: PMC7755806 DOI: 10.1002/mbo3.1131] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Revised: 10/03/2020] [Accepted: 10/07/2020] [Indexed: 12/30/2022] Open
Abstract
In this study, a total of 14 vaginal samples (GPV1‐14) from giant pandas were analyzed. These vaginal samples were divided into two groups as per the region and age of giant pandas. All the vaginal samples were analyzed using metagenomic sequencing. As per the outcomes of metagenomic analysis, Proteobacteria (39.04%), Firmicutes (5.27%), Actinobacteria (2.94%), and Basidiomycota (2.77%) were found to be the dominant phyla in the microbiome of the vaginal samples. At the genus level, Pseudomonas (21.90%) was found to be the most dominant genus, followed by Streptococcus (3.47%), Psychrobacter (1.89%), and Proteus (1.38%). Metastats analysis of the microbial species in the vaginal samples of giant pandas from Wolong Nature Reserve, Dujiangyan and Ningbo Youngor Zoo, and Ya'an Bifengxia Nature Reserve was found to be significantly different (p < 0.05). Age groups, that is, AGE1 (5‐10 years old) and AGE2 (11‐16 years old), also demonstrated significantly different inter‐group microbial species (p < 0.05). For the first time, Chlamydia and Neisseria gonorrhoeae were detected in giant pandas’ reproductive tract. GPV3 vaginal sample (2.63%) showed highest Chlamydia content followed by GPV14 (0.91%), and GPV7 (0.62%). GPV5 vaginal sample (7.17%) showed the highest Neisseria gonorrhoeae content, followed by GPV14 (7.02%), and GPV8 (6.50%). Furthermore, we employed eggNOG, CAZy, KEGG, and NCBI databases to investigate the functional significance of giant panda's vaginal microbial community. The outcomes indicated that giant panda's vaginal microbes were involved in biological processes. The data from this study will help in improving the reproductive health of giant pandas.
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Affiliation(s)
- Lan Zhang
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, College of Life Sciences, Sichuan University, Chengdu, PR China
| | - Caiwu Li
- China Conservation and Research Center for the Giant Panda, Key Laboratory of State Forestry and Grassland Administration on Conservation Biology of Rare Animals in the Giant Panda National Park, Qionglai Mountains Conservation Biology of Endangered Wild Animals and Plants National Permanent Scientific Research Base, Dujiangyan, PR China
| | - Yaru Zhai
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, College of Life Sciences, Sichuan University, Chengdu, PR China
| | - Lan Feng
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, College of Life Sciences, Sichuan University, Chengdu, PR China
| | - Keke Bai
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, College of Life Sciences, Sichuan University, Chengdu, PR China
| | - Zhizhong Zhang
- China Conservation and Research Center for the Giant Panda, Key Laboratory of State Forestry and Grassland Administration on Conservation Biology of Rare Animals in the Giant Panda National Park, Qionglai Mountains Conservation Biology of Endangered Wild Animals and Plants National Permanent Scientific Research Base, Dujiangyan, PR China
| | - Yan Huang
- China Conservation and Research Center for the Giant Panda, Key Laboratory of State Forestry and Grassland Administration on Conservation Biology of Rare Animals in the Giant Panda National Park, Qionglai Mountains Conservation Biology of Endangered Wild Animals and Plants National Permanent Scientific Research Base, Dujiangyan, PR China
| | - Ti Li
- China Conservation and Research Center for the Giant Panda, Key Laboratory of State Forestry and Grassland Administration on Conservation Biology of Rare Animals in the Giant Panda National Park, Qionglai Mountains Conservation Biology of Endangered Wild Animals and Plants National Permanent Scientific Research Base, Dujiangyan, PR China
| | - Desheng Li
- China Conservation and Research Center for the Giant Panda, Key Laboratory of State Forestry and Grassland Administration on Conservation Biology of Rare Animals in the Giant Panda National Park, Qionglai Mountains Conservation Biology of Endangered Wild Animals and Plants National Permanent Scientific Research Base, Dujiangyan, PR China
| | - Hao Li
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, College of Life Sciences, Sichuan University, Chengdu, PR China
| | - Pengfei Cui
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, College of Life Sciences, Sichuan University, Chengdu, PR China
| | - Danyu Chen
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, College of Life Sciences, Sichuan University, Chengdu, PR China
| | - Hongning Wang
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, College of Life Sciences, Sichuan University, Chengdu, PR China
| | - Xin Yang
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, College of Life Sciences, Sichuan University, Chengdu, PR China
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