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Lee T, Kang D, Kim M, Choi S, Cheong DY, Roh S, Oh SH, Park I, Lee G. Hydrophobic Barriers for Directing Physarum polycephalum Propulsion and Navigation. ACS OMEGA 2023; 8:41649-41654. [PMID: 37970039 PMCID: PMC10634242 DOI: 10.1021/acsomega.3c05560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 10/06/2023] [Accepted: 10/12/2023] [Indexed: 11/17/2023]
Abstract
Physarum polycephalum (P. polycephalum) is a unicellular protist with unique properties, such as learning and remembering in its cultured environment without a brain or central nervous system. The organism has been extensively used in morphology, taxis, and positive feedback dynamics studies. However, the lack of standardization of materials and substrate designs used in P. polycephalum studies has significantly limited conducting such studies, increasing the cost and time. In this study, we introduce a method to control the direction and migration of P. polycephalum by drawing hydrophobic lines and patterns. Our study succeeded in controlling the movement of P. polycephalum by setting a variety of hydrophobic designs such as complete barrier, single-slit barrier, taper barrier, dumbbell barrier, and one-side-opened rectangular barrier, suggesting the effectiveness of the hydrophobic barrier in regulating the propulsion and navigation of the organisms. Moreover, we demonstrated that utilizing such geometric constraints can reduce the experimental time required for toxicity testing based on P. polycephalum by more than 300%. Our techniques open new possibilities for studying the biophysical properties and behaviors of P. polycephalum, while also facilitating toxicity testing.
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Affiliation(s)
- Taeha Lee
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
- Interdisciplinary
Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong 30019, South Korea
| | - Dain Kang
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
| | - Minsu Kim
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
| | - Sukyung Choi
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
| | - Da Yeon Cheong
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
- Interdisciplinary
Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong 30019, South Korea
| | - Seokbeom Roh
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
- Interdisciplinary
Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong 30019, South Korea
| | - Seung Hyeon Oh
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
| | - Insu Park
- Department
of Biomedical Engineering, Konyang University, Daejeon 35365, South Korea
| | - Gyudo Lee
- Department
of Biotechnology and Bioinformatics, Korea
University, Sejong 30019, South Korea
- Interdisciplinary
Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong 30019, South Korea
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Rolland A, Pasquier E, Malvezin P, Cassandra C, Dumas M, Dussutour A. Behavioural changes in slime moulds over time. Philos Trans R Soc Lond B Biol Sci 2023; 378:20220063. [PMID: 36802777 PMCID: PMC9939273 DOI: 10.1098/rstb.2022.0063] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Accepted: 10/21/2022] [Indexed: 02/21/2023] Open
Abstract
Changes in behaviour over the lifetime of single-cell organisms have primarily been investigated in response to environmental stressors. However, growing evidence suggests that unicellular organisms undergo behavioural changes throughout their lifetime independently of the external environment. Here we studied how behavioural performances across different tasks vary with age in the acellular slime mould Physarum polycephalum. We tested slime moulds aged from 1 week to 100 weeks. First, we showed that migration speed decreases with age in favourable and adverse environments. Second, we showed that decision making and learning abilities do not deteriorate with age. Third, we revealed that old slime moulds can recover temporarily their behavioural performances if they go throughout a dormant stage or if they fuse with a young congener. Last, we observed the response of slime mould facing a choice between cues released by clone mates of different age. We found that both old and young slime moulds are attracted preferentially toward cues left by young slime moulds. Although many studies have studied behaviour in unicellular organisms, few have taken the step of looking for changes in behaviour over the lifetime of individuals. This study extends our knowledge of the behavioural plasticity of single-celled organisms and establishes slime moulds as a promising model to investigate the effect of ageing on behaviour at the cellular level. This article is part of a discussion meeting issue 'Collective behaviour through time'.
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Affiliation(s)
- Angèle Rolland
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
| | - Emilie Pasquier
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
| | - Paul Malvezin
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
| | - Craig Cassandra
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
| | - Mathilde Dumas
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
| | - A. Dussutour
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse 31062, France
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Dhawale D, Kamboj VK, Anand P. An effective solution to numerical and multi-disciplinary design optimization problems using chaotic slime mold algorithm. ENGINEERING WITH COMPUTERS 2021; 38:2739-2777. [PMID: 34092833 PMCID: PMC8164690 DOI: 10.1007/s00366-021-01409-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Accepted: 04/20/2021] [Indexed: 05/24/2023]
Abstract
Slime mold algorithm (SMA) is a recently developed meta-heuristic algorithm that mimics the ability of a single-cell organism (slime mold) for finding the shortest paths between food centers to search or explore a better solution. It is noticed that entrapment in local minima is the most common problem of these meta-heuristic algorithms. Thus, to further enhance the exploitation phase of SMA, this paper introduces a novel chaotic algorithm in which sinusoidal chaotic function has been combined with the basic SMA. The resultant chaotic slime mold algorithm (CSMA) is applied to 23 extensively used standard test functions and 10 multidisciplinary design problems. To check the validity of the proposed algorithm, results of CSMA has been compared with other recently developed and well-known classical optimizers such as PSO, DE, SSA, MVO, GWO, DE, MFO, SCA, CS, TSA, PSO-DE, GA, HS, Ray and Sain, MBA, ACO, and MMA. Statistical results suggest that chaotic strategy facilitates SMA to provide better performance in terms of solution accuracy. The simulation result shows that the developed chaotic algorithm outperforms on almost all benchmark functions and multidisciplinary engineering design problems with superior convergence.
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Affiliation(s)
- Dinesh Dhawale
- School of Electronics and Electrical Engineering, Lovely Professional University, Phagwara, Punjab India
- Department of Electrical Engineering, Priyadarshini College of Engineering, Nagpur, Maharashtra India
| | - Vikram Kumar Kamboj
- School of Electronics and Electrical Engineering, Lovely Professional University, Phagwara, Punjab India
- Schulich School of Engineering, University of Calgary, Alberta, Canada
| | - Priyanka Anand
- Department of Electronics and Communication Engineering, Bhagat Phool Singh Mahila Vishwavidyalaya, Khanpur Kalan, Haryana India
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Patino-Ramirez F, Arson C, Dussutour A. Substrate and cell fusion influence on slime mold network dynamics. Sci Rep 2021; 11:1498. [PMID: 33452314 PMCID: PMC7810851 DOI: 10.1038/s41598-020-80320-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Accepted: 12/08/2020] [Indexed: 12/02/2022] Open
Abstract
The acellular slime mold Physarum polycephalum provides an excellent model to study network formation, as its network is remodelled constantly in response to mass gain/loss and environmental conditions. How slime molds networks are built and fuse to allow for efficient exploration and adaptation to environmental conditions is still not fully understood. Here, we characterize the network organization of slime molds exploring homogeneous neutral, nutritive and adverse environments. We developed a fully automated image analysis method to extract the network topology and followed the slime molds before and after fusion. Our results show that: (1) slime molds build sparse networks with thin veins in a neutral environment and more compact networks with thicker veins in a nutritive or adverse environment; (2) slime molds construct long, efficient and resilient networks in neutral and adverse environments, whereas in nutritive environments, they build shorter and more centralized networks; and (3) slime molds fuse rapidly and establish multiple connections with their clone-mates in a neutral environment, whereas they display a late fusion with fewer connections in an adverse environment. Our study demonstrates that slime mold networks evolve continuously via pruning and reinforcement, adapting to different environmental conditions.
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Affiliation(s)
- Fernando Patino-Ramirez
- School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA, 30309, USA.
| | - Chloé Arson
- School of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, GA, 30309, USA
| | - Audrey Dussutour
- Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse University, CNRS, UPS, Toulouse, France.
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