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Rucker HR, Kaçar B. Enigmatic evolution of microbial nitrogen fixation: insights from Earth's past. Trends Microbiol 2024; 32:554-564. [PMID: 37061455 DOI: 10.1016/j.tim.2023.03.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Revised: 03/16/2023] [Accepted: 03/20/2023] [Indexed: 04/17/2023]
Abstract
The evolution of nitrogen fixation undoubtedly altered nearly all corners of the biosphere, given the essential role of nitrogen in the synthesis of biomass. To date, there is no unified view on what planetary conditions gave rise to nitrogen fixation or how these conditions have sustained it evolutionarily. Intriguingly, the concentrations of metals that nitrogenases require to function have changed throughout Earth's history. In this review, we describe the interconnection of the metal and nitrogen cycles with nitrogenase evolution and the importance of ancient ecology in the formation of the modern nitrogen cycle. We argue that exploration of the nitrogen cycle's deep past will provide insights into humanity's immediate environmental challenges centered on nitrogen availability.
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Affiliation(s)
- Holly R Rucker
- Department of Bacteriology, University of Wisconsin, Madison, WI, USA
| | - Betül Kaçar
- Department of Bacteriology, University of Wisconsin, Madison, WI, USA.
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2
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Rodriguez LE, Altair T, Hermis NY, Jia TZ, Roche TP, Steller LH, Weber JM. Chapter 4: A Geological and Chemical Context for the Origins of Life on Early Earth. ASTROBIOLOGY 2024; 24:S76-S106. [PMID: 38498817 DOI: 10.1089/ast.2021.0139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/20/2024]
Abstract
Within the first billion years of Earth's history, the planet transformed from a hot, barren, and inhospitable landscape to an environment conducive to the emergence and persistence of life. This chapter will review the state of knowledge concerning early Earth's (Hadean/Eoarchean) geochemical environment, including the origin and composition of the planet's moon, crust, oceans, atmosphere, and organic content. It will also discuss abiotic geochemical cycling of the CHONPS elements and how these species could have been converted to biologically relevant building blocks, polymers, and chemical networks. Proposed environments for abiogenesis events are also described and evaluated. An understanding of the geochemical processes under which life may have emerged can better inform our assessment of the habitability of other worlds, the potential complexity that abiotic chemistry can achieve (which has implications for putative biosignatures), and the possibility for biochemistries that are vastly different from those on Earth.
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Affiliation(s)
- Laura E Rodriguez
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
- Lunar and Planetary Institute, Universities Space Research Association, Houston, Texas, USA. (Current)
| | - Thiago Altair
- Institute of Chemistry of São Carlos, Universidade de São Paulo, São Carlos, Brazil
- Department of Chemistry, College of the Atlantic, Bar Harbor, Maine, USA. (Current)
| | - Ninos Y Hermis
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
- Department of Physics and Space Sciences, University of Granada, Granada Spain. (Current)
| | - Tony Z Jia
- Earth-Life Science Institute, Tokyo Institute of Technology, Ookayama, Meguro-ku, Tokyo, Japan
- Blue Marble Space Institute of Science, Seattle, Washington, USA
| | - Tyler P Roche
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia, USA
| | - Luke H Steller
- Australian Centre for Astrobiology, and School of Biological, Earth and Environmental Sciences, University of New South Wales, Kensington, Australia
| | - Jessica M Weber
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
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Cueto-Díaz EJ, Gálvez-Martínez S, Colin-García M, Mateo-Martí E. A New Approach in Prebiotic Chemistry Studies: Proline Sorption Triggered by Mineral Surfaces Analysed Using XPS. Life (Basel) 2023; 13:life13040908. [PMID: 37109437 PMCID: PMC10141706 DOI: 10.3390/life13040908] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Revised: 03/24/2023] [Accepted: 03/28/2023] [Indexed: 04/01/2023] Open
Abstract
The role of minerals in the origin of life and prebiotic evolution remains unknown and controversial. Mineral surfaces have the potential to facilitate prebiotic polymerization due to their ability to adsorb and concentrate biomolecules that subsequently can catalyse reactions; however, the precise nature of the interaction between the mineral host and the guest biomolecule still needs to be understood. In this context, we spectroscopically characterized, using infrared, X-ray photoemission spectroscopy (XPS) and X-ray diffraction (XRD) techniques, the interaction between L-proline and montmorillonite, olivine, iron disulphide, and haematite (minerals of prebiotic interest), by evaluating their interaction from a liquid medium. This work provides insight into the chemical processes occurring between proline, the only cyclic amino acid, and this selection of minerals, each of them bearing a particular chemical and crystal structures. Proline was successfully adsorbed on montmorillonite, haematite, olivine, and iron disulphide in anionic and zwitterionic chemical forms, being the predominant form directly related to the mineral structure and composition. Silicates (montmorillonite) dominate adsorption, whereas iron oxides (haematite) show the lowest molecular affinity. This approach will help to understand structure-affinity relationship between the mineral surfaces and proline, one of the nine amino acids generated in the Miller-Urey experiment.
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Aithal A, Dagar S, Rajamani S. Metals in Prebiotic Catalysis: A Possible Evolutionary Pathway for the Emergence of Metalloproteins. ACS OMEGA 2023; 8:5197-5208. [PMID: 36816708 PMCID: PMC9933472 DOI: 10.1021/acsomega.2c07635] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 01/12/2023] [Indexed: 06/07/2023]
Abstract
Proteinaceous catalysts found in extant biology are products of life that were potentially derived through prolonged periods of evolution. Given their complexity, it is reasonable to assume that they were not accessible to prebiotic chemistry as such. Nevertheless, the dependence of many enzymes on metal ions or metal-ligand cores suggests that catalysis relevant to biology could also be possible with just the metal centers. Given their availability on the Hadean/Archean Earth, it is fair to conjecture that metal ions could have constituted the first forms of catalysts. A slow increase of complexity that was facilitated through the provision of organic ligands and amino acids/peptides possibly allowed for further evolution and diversification, eventually demarcating them into specific functions. Herein, we summarize some key experimental developments and observations that support the possible roles of metal catalysts in shaping the origins of life. Further, we also discuss how they could have evolved into modern-day enzymes, with some suggestions for what could be the imminent next steps that researchers can pursue, to delineate the putative sequence of catalyst evolution during the early stages of life.
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Affiliation(s)
- Anuraag Aithal
- Department
of Biology, Indian Institute of Science
Education and Research, Pune, Maharashtra 411008, India
| | - Shikha Dagar
- Department
of Biology, Indian Institute of Science
Education and Research, Pune, Maharashtra 411008, India
| | - Sudha Rajamani
- Department
of Biology, Indian Institute of Science
Education and Research, Pune, Maharashtra 411008, India
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Heliso Dolla T, Matthews T, Wendy Maxakato N, Ndungu P, Montini T. Recent advances in transition metal sulfide-based electrocatalysts and photocatalysts for nitrogen fixation. J Electroanal Chem (Lausanne) 2023. [DOI: 10.1016/j.jelechem.2022.117049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Dagar S, Sarkar S, Rajamani S. Porphyrin in prebiotic catalysis: Ascertaining a route for the emergence of early metalloporphyrins. Chembiochem 2022; 23:e202200013. [PMID: 35233914 DOI: 10.1002/cbic.202200013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Revised: 02/15/2022] [Indexed: 11/09/2022]
Abstract
Metal ions are known to catalyze certain prebiotic reactions. However, the transition from metal ions to extant metalloenzymes remains unclear. Porphyrins are found ubiquitously in the catalytic core of many ancient metalloenzymes. In this study, we evaluated the influence of porphyrin-based organic scaffold, on the catalysis, emergence and putative molecular evolution of prebiotic metalloporphyrins. We studied the effect of porphyrins on the transition metal ion-mediated oxidation of hydroquinone (HQ). We report a change in the catalytic activity of the metal ions in the presence of porphyrin. This was observed to be facilitated by the coordination between metal ions and porphyrins or by the formation of non-coordinated complexes. The metal-porphyrin complexes also oxidized NADH, underscoring its versatility at oxidizing more than one substrate. Our study highlights the selective advantage that some of the metal ions would have had in the presence of porphyrin, underscoring their role in shaping the evolution of protometalloenzymes.
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Affiliation(s)
- Shikha Dagar
- IISER Pune: Indian Institute of Science Education Research Pune, Biology, IISER Pune, Dr. Homi Bhabha Road, Pashan, Pune, 411008, Pune, INDIA
| | - Susovan Sarkar
- IISER Pune: Indian Institute of Science Education Research Pune, Biology, Iiser Pune, Dr. Homi Bhabha Road, Pashan, Pune, 411008, Pune, INDIA
| | - Sudha Rajamani
- IISER Pune: Indian Institute of Science Education Research Pune, Biology, Dr. Homi Bhaba Rd, Pashan, Near NCL, 411008, Pune, INDIA
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Bonales LJ, Mateo-Martí E. Study of the Stability of Gly·MgSO 4·5H 2O under Simulated Martian Conditions by In Situ Raman Spectroscopy. ASTROBIOLOGY 2022; 22:75-86. [PMID: 34874753 DOI: 10.1089/ast.2021.0048] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Identification of spectroscopic fingerprints that correspond to relevant molecules/minerals in a Mars-like environment is a crucial search in astrobiology. Therefore, we studied the stability of Gly·MgSO4·5H2O under Mars-like surface conditions and compared it to the behavior of epsomite and glycine. Gly·MgSO4·5H2O has been identified as a molecule of astrobiological interest since an amino acid and water molecules, which are essential for life, are part of its structure. Furthermore, this compound may form by the interaction of sulfate minerals with glycine-bearing aqueous solutions, and both could be present on Mars. The main analyses were performed by using in situ Raman spectroscopy, a ground-breaking technique for NASA and ESA Mars planetary missions. We have integrated a Raman spectrometer in a Planetary Atmosphere and Surfaces Chamber (PASC) and have identified the processing of molecules exposed to a simulated martian atmosphere, UV irradiation, and temperature. Our results show that pressure is critical to provoke amorphization of Gly·MgSO4·5H2O, and the release of glycine from the compound; the stabilization effect at low temperature and stability of Gly·MgSO4·5H2O is greater than to glycine and epsomite. The strategy employed here allows us to evaluate the effect of diverse simulated martian environmental conditions on molecular preservation by using Raman spectroscopy.
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Pérez-Fernández C, Ruiz-Bermejo M, Gálvez-Martínez S, Mateo-Martí E. An XPS study of HCN-derived films on pyrite surfaces: a prebiotic chemistry standpoint towards the development of protective coatings. RSC Adv 2021; 11:20109-20117. [PMID: 35479901 PMCID: PMC9033743 DOI: 10.1039/d1ra02658e] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Accepted: 05/12/2021] [Indexed: 11/21/2022] Open
Abstract
Traditionally, the effect of mineral surfaces on increasing molecular complexity has been considered a major issue in studies about the origin of life. In contrast, herein, the effects of organic films derived from cyanide over an important prebiotic mineral, pyrite, are considered. An XPS spectroscopy study was carried out to understand the surface chemistry of the HCN-derived polymer/pyrite system. As a result, the simulation of a plausible prebiotic alkaline hydrothermal environment led to the identification of an NH4CN-based film with protective corrosion properties that immediately prevented the oxidation of the highly reactive pyrite surface. In addition, the effect of coating with antioxidant properties was preserved over a relatively long time, and the polymeric film was very stable under ambient conditions. These results increase the great potential of HCN polymers for development as a cheap and easily produced new class of multifunctional polymeric materials that also show promising and attractive insights into prebiotic chemistry. Alkaline hydrothermal environment led to a NH4CN-based film with protective corrosion properties on the highly reactive pyrite surface.![]()
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Affiliation(s)
- Cristina Pérez-Fernández
- Centro de Astrobiología (INTA-CSIC), Dpto. Evolución Molecular Ctra. Torrejón-Ajalvir, km 4, Torrejón de Ardoz 28850 Madrid Spain
| | - Marta Ruiz-Bermejo
- Centro de Astrobiología (INTA-CSIC), Dpto. Evolución Molecular Ctra. Torrejón-Ajalvir, km 4, Torrejón de Ardoz 28850 Madrid Spain
| | - Santos Gálvez-Martínez
- Centro de Astrobiología (INTA-CSIC), Dpto. Evolución Molecular Ctra. Torrejón-Ajalvir, km 4, Torrejón de Ardoz 28850 Madrid Spain
| | - Eva Mateo-Martí
- Centro de Astrobiología (INTA-CSIC), Dpto. Evolución Molecular Ctra. Torrejón-Ajalvir, km 4, Torrejón de Ardoz 28850 Madrid Spain
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Li P, Gao S, Liu Q, Ding P, Wu Y, Wang C, Yu S, Liu W, Wang Q, Chen S. Recent Progress of the Design and Engineering of Bismuth Oxyhalides for Photocatalytic Nitrogen Fixation. ADVANCED ENERGY AND SUSTAINABILITY RESEARCH 2021. [DOI: 10.1002/aesr.202000097] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Peishen Li
- Laboratory for Micro-sized Functional Materials College of Elementary Education Department of Chemistry Capital Normal University Beijing 100048 China
- Beijing Innovation Center for Engineering Science and Advanced Technology (BIC-ESAT) Key Laboratory of Water and Sediment Sciences (Ministry of Education) College of Environmental Sciences and Engineering Peking University Beijing 100871 China
| | - Shuai Gao
- Laboratory for Micro-sized Functional Materials College of Elementary Education Department of Chemistry Capital Normal University Beijing 100048 China
| | - Qiming Liu
- Department of Chemistry and Biochemistry University of California 1156 High Street Santa Cruz CA 95064 USA
| | - Peiren Ding
- Laboratory for Micro-sized Functional Materials College of Elementary Education Department of Chemistry Capital Normal University Beijing 100048 China
| | - Yunyun Wu
- Laboratory for Micro-sized Functional Materials College of Elementary Education Department of Chemistry Capital Normal University Beijing 100048 China
| | - Changzheng Wang
- Beijing Key Laboratory of Functional Materials for Building Structure and Environmental Remediation Beijing University of Civil Engineering and Architecture Beijing 100044 China
| | - Shaobin Yu
- Beijing Key Laboratory of Functional Materials for Building Structure and Environmental Remediation Beijing University of Civil Engineering and Architecture Beijing 100044 China
| | - Wen Liu
- Beijing Innovation Center for Engineering Science and Advanced Technology (BIC-ESAT) Key Laboratory of Water and Sediment Sciences (Ministry of Education) College of Environmental Sciences and Engineering Peking University Beijing 100871 China
| | - Qiang Wang
- Laboratory for Micro-sized Functional Materials College of Elementary Education Department of Chemistry Capital Normal University Beijing 100048 China
| | - Shaowei Chen
- Department of Chemistry and Biochemistry University of California 1156 High Street Santa Cruz CA 95064 USA
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