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For: McClure RS, Lee JY, Chowdhury TR, Bottos EM, White RA 3rd, Kim YM, Nicora CD, Metz TO, Hofmockel KS, Jansson JK, Song HS. Integrated network modeling approach defines key metabolic responses of soil microbiomes to perturbations. Sci Rep 2020;10:10882. [PMID: 32616808 DOI: 10.1038/s41598-020-67878-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2020] [Accepted: 05/21/2020] [Indexed: 11/16/2022]  Open
Number Cited by Other Article(s)
1
Ghatak A, Chaturvedi P, Waldherr S, Subbarao GV, Weckwerth W. PANOMICS at the interface of root-soil microbiome and BNI. TRENDS IN PLANT SCIENCE 2023;28:106-122. [PMID: 36229336 DOI: 10.1016/j.tplants.2022.08.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Revised: 08/10/2022] [Accepted: 08/19/2022] [Indexed: 06/16/2023]
2
McClure R, Farris Y, Danczak R, Nelson W, Song HS, Kessell A, Lee JY, Couvillion S, Henry C, Jansson JK, Hofmockel KS. Interaction Networks Are Driven by Community-Responsive Phenotypes in a Chitin-Degrading Consortium of Soil Microbes. mSystems 2022;7:e0037222. [PMID: 36154140 PMCID: PMC9599572 DOI: 10.1128/msystems.00372-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Accepted: 08/24/2022] [Indexed: 12/24/2022]  Open
3
Zhu J, Chen G, Zhou J, Zeng Y, Cheng K, Cai Z. Dynamic patterns of quorum sensing signals in phycospheric microbes during a marine algal bloom. ENVIRONMENTAL RESEARCH 2022;212:113443. [PMID: 35550809 DOI: 10.1016/j.envres.2022.113443] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Revised: 04/26/2022] [Accepted: 05/04/2022] [Indexed: 06/15/2023]
4
Lee JY, Mitchell HD, Burnet MC, Wu R, Jenson SC, Merkley ED, Nakayasu ES, Nicora CD, Jansson JK, Burnum-Johnson KE, Payne SH. Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics. J Proteome Res 2022;21:2023-2035. [PMID: 35793793 PMCID: PMC9361346 DOI: 10.1021/acs.jproteome.2c00334] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
5
Kessell AK, McCullough HC, Auchtung JM, Bernstein HC, Song HS. Predictive interactome modeling for precision microbiome engineering. Curr Opin Chem Eng 2020. [DOI: 10.1016/j.coche.2020.08.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
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