Study of the bioremediatory capacity of wild yeasts

Yeast-driven valorization of agro-industrial wastewater: an overview

The intensive industrial and agricultural activities currently on-going worldwide to feed the growing human population have led to significant increase in the amount of wastewater produced. These effluents are high in phosphorus (P), nitrogen (N), chemical oxygen demand (COD), biochemical oxygen demand (BOD), and heavy metals. These compounds can provoke imbalance in the ecosystem with grievous consequences to both the environment and humans. Adequate treatment of these wastewaters is therefore of utmost importance to humanity. This can be achieved through valorization of these waste streams, which is based on biorefinery idea and concept of reduce, reuse, and recycle for sustainable circular economy. This concept uses innovative processes to produce value-added products from waste such as wastewater. Yeast-based wastewater treatment is currently on the rise given to the many characteristics of yeast cells. Yeasts are generally fast growing, and they are robust in terms of tolerance to stress and inhibitory compounds, in addition to their ability to metabolize a diverse range of substrates and create a diverse range of metabolites. Therefore, yeast cells possess the capacity to recover and transform agro-industrial wastewater nutrients into highly valuable metabolites. In addition to remediating the wastewater, numerous value-added products such as single cell oil (SCO), single cell proteins (SCPs), biofuels, organic acid, and aromatic compounds amongst others can be produced through fermentation of wastewater by yeast cells. This work thus brings to limelight the potential roles of yeast cells in reducing, reusing, and recycling of agro-industrial wastewaters while proffering solutions to some of the factors that limit yeast-mediated wastewater valorization.

Use of probiotic yeasts with biocontrol activity for fermentation of ewe's milk

BACKGROUND

There are sufficient scienctific studies that support the benefit that fermented dairy products produce in those who consume them. Traditionally, cow's milk has been the most commonly used milk but there is a growing interest in the development of new dairy products, substituting cow's milk with milk from other sources, as well as in the use of microorganisms in fermentation to replace artificial preservatives or treatments that may affect the chemical and organoleptic characteristics of the product. For these reasons, the aim of the present work was to understand the behavior of five potential probiotic yeasts during the fermentation of ewe's milk and to consider their potential use as biocontrol agents.

RESULTS

Saccharomyces cerevisiae 3 and Hanseniaspora osmophila 1056 provided the most promising kinetic parameters in the different salt, temperature and pH conditions tested in their technological characterization. The profiles of organic acids and volatile compounds after the fermentation period was noteworthy for contributing to the final aroma of the dairy product. Sensory analysis revealed the sour taste of all samples, and S. cerevisiae 3, Lachancea thermotolerans 1039, and H. osmophila 1056 stood out for an accentuated cheese flavor. In addition, all strains showed biocontrol activity; they reduced the mycelium of the mycotoxigenic molds.

CONCLUSION

Saccharomyces cerevisiae 3 and H. osmophila 1056 could be inoculated along with bacterial starters to provide a functional fermented beverage with improved flavor. These strains also have an added value as they act as biocontrol agents. © 2022 Society of Chemical Industry.

Adsorption of organic micropollutants on yeast: Batch experiment and modeling

Yeast is ubiquitous and may act as a solid phase in natural aquatic systems, which may affect the distribution of organic micropollutants (OMs). Therefore, it is important to understand the adsorption of OMs on yeast. Therefore, in this study, a predictive model for the adsorption values of OMs on the yeast was developed. For that, an isotherm experiment was performed to estimate the adsorption affinity of OMs on yeast (i.e., Saccharomyces cerevisiae). Afterwards, quantitative structure-activity relationship (QSAR) modeling was performed for the purpose of developing a prediction model and explaining the adsorption mechanism. For the modeling, empirical and in silico linear free energy relationship (LFER) descriptors were applied. The isotherm results showed that yeast adsorbs a wide range of OMs, but the magnitude of K_d strongly depends on the types of OMs. The measured log K_d values of the tested OMs ranged from -1.91 to 1.1. Additionally, it was confirmed that the K_d measured in distilled water is comparable to that measured in real anaerobic or aerobic wastewater (R² = 0.79). In QSAR modeling, the K_d value could be predicted by the LFER concept with an R² of 0.867 by empirical descriptors and an R² of 0.796 by in silico descriptors. The adsorption mechanisms of yeast for OMs were identified in individual correlations between log K_d and each descriptor: Dispersive interaction, hydrophobicity, hydrogen-bond donor, and cationic Coulombic interaction of OMs attract the adsorption, while the hydrogen-bond acceptor and anionic Coulombic interaction of OMs act as repulsive forces. The developed model can be used as an efficient method to estimate OM adsorption to yeast at a low level of concentration.

Occurrence of aflatoxins in water and decontamination strategies: A review

Aflatoxins are highly carcinogenic metabolites produced by some Aspergillus species and are the most prevalent mycotoxins. Although aflatoxins are commonly synthesized during fungal colonization in preharvest maize, cereals, and nuts, they can be transported by rainfall to surface water and are a common toxin found in wastewater from some food industries. Here, the occurrence of aflatoxins in bodies of water is reviewed for the first time, along with the decontamination methods. Aflatoxins have been detected in surface, wastewater and drinking water, including tap and bottled water. The specific sources of water contamination remain unclear, which is an important gap that must be addressed in future research. Two main kinds of decontamination methods have been reported, including degradation and adsorption. The best degradation rates were observed using gamma and UV irradiations, oxidoreductases and ozone, while the best adsorption abilities were observed with minerals, polyvinyl alcohol, durian peel and activated carbon. Synthetic polymers could be used as membranes in pipes to remove aflatoxins in water flows. Although most decontamination methods were screened using AFB₁, the other commonly found aflatoxins were not used in the screenings. Overall, the occurrence of aflatoxins in water could be a significant emerging public health concern largely ignored by local and international legislation. Numerous advances have been reported for the decontamination of aflatoxins in water; however, there is still a long way to go to put them into practice.

Development and applications of a CRISPR activation system for facile genetic overexpression in Candida albicans

For the fungal pathogen Candida albicans, genetic overexpression readily occurs via a diversity of genomic alterations, such as aneuploidy and gain-of-function mutations, with important consequences for host adaptation, virulence, and evolution of antifungal drug resistance. Given the important role of overexpression on C. albicans biology, it is critical to develop and harness tools that enable the analysis of genes expressed at high levels in the fungal cell. Here, we describe the development, optimization, and application of a novel, single-plasmid-based CRISPR activation (CRISPRa) platform for targeted genetic overexpression in C. albicans, which employs a guide RNA to target an activator complex to the promoter region of a gene of interest, thus driving transcriptional expression of that gene. Using this system, we demonstrate the ability of CRISPRa to drive high levels of gene expression in C. albicans, and we assess optimal guide RNA targeting for robust and constitutive overexpression. We further demonstrate the specificity of the system via RNA sequencing. We highlight the application of CRISPR activation to overexpress genes involved in pathogenesis and drug susceptibility, and contribute toward the identification of novel phenotypes. Consequently, this tool will facilitate a broad range of applications for the study of C. albicans genetic overexpression.

Use of Microwave Maceration in Red Winemaking: Effect on Fermentation and Chemical Composition of Red Wines

The objective of this study was to evaluate the effect of microwave treatment of crushed grapes on the yeast population of the must and on the development of alcoholic fermentation, as well as on the extraction of different compounds from the grapes such as polysaccharides and amino acids that can affect the organoleptic quality and stability of the wine. This study demonstrated for the first time the effect of the microwave treatment of grapes on native yeast species and their diversity, producing an increase in fermentation kinetics and a decrease in the lag phase. The microwave treatment produced a positive effect on the extraction of amino acids and polysaccharides from the grapes, resulting in significantly higher amounts of the main amino acids of the must and some major volatile compounds in the treated samples. The polysaccharides most affected by the microwave treatment were the PRAGs, the main polysaccharides liberated from grapes during the maceration.

Effects of ultrasound treatments on wine microorganisms

Ultrasound is one of the most promising non-thermal an emerging technique in food technology. The objective of the present work was to evaluate the effect of different ultrasonic treatments on the most important wine microbiota (Saccharomyces and non-Saccharomyces yeasts and lactic acid bacteria). Two stages were carried out: the assessment step, where six different ultrasonic treatments (with varying power, time, and pulses) were used on Saccharomyces cerevisiae, Brettanomyces spp., and Lactiplantibacillus plantarum; and the validation step, where two chosen ultrasonic treatments were used on Zigosaccharomyces bailli, Brettanomyces spp., Saccharomyces cerevisiae, Saccharomyces bayanus, Pichia membranifaciens, Schizosaccharomyces pombe, and Hanseniaspora osmophila. The most sensitive microorganism was Brettanomyces spp., and the most resistant was Lactiplantibacillus plantarum. Ultrasonic treatments had varying effects on vitality (delay of growth or maximum OD reduction) and on viability (reduction of microbial growth).

Bioremediation potential and lead removal capacity of heavy metal-tolerant yeasts isolated from Dayet Oum Ghellaz Lake water (northwest of Algeria)

Seven metal-resistant yeast strains were isolated and selected from Dayet Oum Ghellaz Lake water (northwest of Algeria) known as a highly polluted area by lead and cadmium. The yeast strains were screened on the basis of their resistance to seven heavy metals Hg, Cr, Cd, Pb, Cu, Zn, and Fe and characterized by molecular and phylogenetic analysis. The sequencing of the D1/D2 domain of the 26S rRNA genes revealed the affiliation of the seven yeast isolates to Rhodotorula mucilaginosa, Clavispora lusitaniae, and Wickerhamomyces anomalus species. All yeast strains were halotolerant as they were able to grow in 10-15% NaCl. The yeast isolates were highly resistant to the studied heavy metals and exhibited different tolerance according to the metal type. The highest minimum inhibitory concentrations (MIC) were observed in R. mucilaginosa RO7 and W. anomalus WO2 strains which were then selected for lead removal assays. The present study is the first to investigate the lead elimination by W. anomalus. The lead uptake was significantly affected by biomass concentration in a reverse relationship, with purification percentages estimated at 98.15 ± 0.9% and 97.046 ± 0.47% and removal efficiency of 12.68 ± 0.91 and 15.55 ± 0.72 mg/g for W. anomalus WO2 and R. mucilaginosa RO7, respectively. The investigated metal-tolerant yeast strains proved to be promising candidates for bioremediation processes of heavy metals. This work amends the metal-resistant yeast bank with new strains having interesting abilities to resist to relatively high concentrations of toxic heavy metals and which can be used in the near future as low-cost biosorbents.

Proteomic profiling and glycomic analysis of the yeast cell wall in strains with Aflatoxin B1 elimination ability

The use of microorganisms for Aflatoxin B₁ elimination has been studied as a new alternative tool and it is known that cell wall carried out a critical role. For that reason, cell wall and soluble intracellular fraction of eight yeasts with AFB₁ detoxification capability were analysed. The quantitative and qualitative comparative label-free proteomic allowed the identification of diverse common constituent proteins, which revealed that putative cell wall proteins entailed less than 10% of the total proteome. It was possible to characterize different enzymes linked to cell wall polysaccharides biosynthesis as well as other proteins related with the cell wall organization and regulation. Additionally, the concentration of the principal polysaccharides was determined which permitted us to observe that β-glucans concentration was higher than mannans in most of the samples. In order to better understand the biosorption role of the cell wall against the AFB₁ , an antimycotic (Caspofungin) was used to damage the cell wall structure. This assay allowed the observation of an effect on the normal growth of those yeasts with damaged cell walls that were exposed to AFB₁ . This effect was not observed in yeast with intact cell walls, which may reveal a protective role of this structure against mycotoxins.

Biological Control and Mitigation of Aflatoxin Contamination in Commodities

Aflatoxins (AFs) are toxic secondary metabolites produced mostly by Aspergillus species. AF contamination entering the feed and food chain has been a crucial long-term issue for veterinarians, medicals, agroindustry experts, and researchers working in this field. Although different (physical, chemical, and biological) technologies have been developed, tested, and employed to mitigate the detrimental effects of mycotoxins, including AFs, universal methods are still not available to reduce AF levels in feed and food in the last decades. Possible biological control by bacteria, yeasts, and fungi, their excretes, the role of the ruminal degradation, pre-harvest biocontrol by competitive exclusion or biofungicides, and post-harvest technologies and practices based on biological agents currently used to alleviate the toxic effects of AFs are collected in this review. Pre-harvest biocontrol technologies can give us the greatest opportunity to reduce AF production on the spot. Together with post-harvest applications of bacteria or fungal cultures, these technologies can help us strictly reduce AF contamination without synthetic chemicals.