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Dantas de Oliveira A, Rubio Maturana C, Zarzuela Serrat F, Carvalho BM, Sulleiro E, Prats C, Veiga A, Bosch M, Zulueta J, Abelló A, Sayrol E, Joseph-Munné J, López-Codina D. Development of a low-cost robotized 3D-prototype for automated optical microscopy diagnosis: An open-source system. PLoS One 2024; 19:e0304085. [PMID: 38905190 PMCID: PMC11192333 DOI: 10.1371/journal.pone.0304085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 05/07/2024] [Indexed: 06/23/2024] Open
Abstract
In a clinical context, conventional optical microscopy is commonly used for the visualization of biological samples for diagnosis. However, the availability of molecular techniques and rapid diagnostic tests are reducing the use of conventional microscopy, and consequently the number of experienced professionals starts to decrease. Moreover, the continuous visualization during long periods of time through an optical microscope could affect the final diagnosis results due to induced human errors and fatigue. Therefore, microscopy automation is a challenge to be achieved and address this problem. The aim of the study is to develop a low-cost automated system for the visualization of microbiological/parasitological samples by using a conventional optical microscope, and specially designed for its implementation in resource-poor settings laboratories. A 3D-prototype to automate the majority of conventional optical microscopes was designed. Pieces were built with 3D-printing technology and polylactic acid biodegradable material with Tinkercad/Ultimaker Cura 5.1 slicing softwares. The system's components were divided into three subgroups: microscope stage pieces, storage/autofocus-pieces, and smartphone pieces. The prototype is based on servo motors, controlled by Arduino open-source electronic platform, to emulate the X-Y and auto-focus (Z) movements of the microscope. An average time of 27.00 ± 2.58 seconds is required to auto-focus a single FoV. Auto-focus evaluation demonstrates a mean average maximum Laplacian value of 11.83 with tested images. The whole automation process is controlled by a smartphone device, which is responsible for acquiring images for further diagnosis via convolutional neural networks. The prototype is specially designed for resource-poor settings, where microscopy diagnosis is still a routine process. The coalescence between convolutional neural network predictive models and the automation of the movements of a conventional optical microscope confer the system a wide range of image-based diagnosis applications. The accessibility of the system could help improve diagnostics and provide new tools to laboratories worldwide.
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Affiliation(s)
- Allisson Dantas de Oliveira
- Computational Biology and Complex Systems Group, Physics Department, Universitat Politècnica de Catalunya (UPC), Castelldefels, Spain
- Microbiology Department, Vall d’Hebron Research Institute (VHIR), Vall d’Hebron University Hospital, Barcelona, Spain
| | - Carles Rubio Maturana
- Microbiology Department, Vall d’Hebron Research Institute (VHIR), Vall d’Hebron University Hospital, Barcelona, Spain
- Department of Microbiology and Genetics, Universitat Autònoma de Barcelona (UAB), Barcelona, Spain
| | - Francesc Zarzuela Serrat
- Microbiology Department, Vall d’Hebron Research Institute (VHIR), Vall d’Hebron University Hospital, Barcelona, Spain
| | - Bruno Motta Carvalho
- Department of Informatics and Applied Mathematics, Federal University of Rio Grande do Norte, Natal, Brazil
| | - Elena Sulleiro
- Microbiology Department, Vall d’Hebron Research Institute (VHIR), Vall d’Hebron University Hospital, Barcelona, Spain
- Department of Microbiology and Genetics, Universitat Autònoma de Barcelona (UAB), Barcelona, Spain
- CIBERINFEC, ISCIII- CIBER de Enfermedades Infecciosas, Instituto de Salud Carlos III, Madrid, Spain
| | - Clara Prats
- Computational Biology and Complex Systems Group, Physics Department, Universitat Politècnica de Catalunya (UPC), Castelldefels, Spain
| | | | | | | | - Alberto Abelló
- Database Technologies and Information Group, Service and Information Systems Engineering Department, Universitat Politècnica de Catalunya (UPC), Barcelona, Spain
| | - Elisa Sayrol
- Tecnocampus, Universitat Pompeu Fabra, Mataró, Spain
| | - Joan Joseph-Munné
- Microbiology Department, Vall d’Hebron Research Institute (VHIR), Vall d’Hebron University Hospital, Barcelona, Spain
| | - Daniel López-Codina
- Computational Biology and Complex Systems Group, Physics Department, Universitat Politècnica de Catalunya (UPC), Castelldefels, Spain
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Alexandrov A, Asada T, Borbone F, Tioukov V, De Lellis G. Super-resolution imaging for the detection of low-energy ion tracks in fine-grained nuclear emulsions. Sci Rep 2023; 13:22813. [PMID: 38129647 PMCID: PMC10739808 DOI: 10.1038/s41598-023-50208-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Accepted: 12/16/2023] [Indexed: 12/23/2023] Open
Abstract
We propose a new wide-field imaging method that exploits the Localized Surface Plasmon Resonance phenomenon to produce super-resolution images with an optical microscope equipped with a custom design polarization analyzer module. In this paper we describe the method and apply it to the analysis of low-energy carbon ion tracks implanted in a nuclear emulsion film. The result is then compared with the measurements of the same tracks carried out at an electronic microscope. The images set side by side show their close similarity. The resolution achieved with the current microscope setup is estimated to be about 50 nm.
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Affiliation(s)
- Andrey Alexandrov
- Università degli Studi di Napoli Federico II, I-80126, Naples, Italy.
- I.N.F.N. sezione di Napoli, I-80126, Naples, Italy.
| | - Takashi Asada
- Università degli Studi di Napoli Federico II, I-80126, Naples, Italy
- I.N.F.N. sezione di Napoli, I-80126, Naples, Italy
| | - Fabio Borbone
- Università degli Studi di Napoli Federico II, I-80126, Naples, Italy
| | | | - Giovanni De Lellis
- Università degli Studi di Napoli Federico II, I-80126, Naples, Italy
- I.N.F.N. sezione di Napoli, I-80126, Naples, Italy
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Abstract
We present an interferometric method suitable to measure particle masses and, where applicable to the particle and its corresponding antiparticle, their mass ratio in order to detect possible symmetry violations between matter and antimatter. The method is based on interferometric techniques tunable to the specific mass range of the particle under consideration. The case study of electron and positron is presented, following the recent observation of positron interferometry.
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