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Kumar S, Suleski M, Craig JM, Kasprowicz AE, Sanderford M, Li M, Stecher G, Hedges SB. TimeTree 5: An Expanded Resource for Species Divergence Times. Mol Biol Evol 2022; 39:msac174. [PMID: 35932227 PMCID: PMC9400175 DOI: 10.1093/molbev/msac174] [Citation(s) in RCA: 429] [Impact Index Per Article: 143.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2022] [Revised: 07/28/2022] [Accepted: 08/03/2022] [Indexed: 12/04/2022] Open
Abstract
We present the fifth edition of the TimeTree of Life resource (TToL5), a product of the timetree of life project that aims to synthesize published molecular timetrees and make evolutionary knowledge easily accessible to all. Using the TToL5 web portal, users can retrieve published studies and divergence times between species, the timeline of a species' evolution beginning with the origin of life, and the timetree for a given evolutionary group at the desired taxonomic rank. TToL5 contains divergence time information on 137,306 species, 41% more than the previous edition. The TToL5 web interface is now ADA-compliant and mobile-friendly, a result of comprehensive source code refactoring. TToL5 also offers programmatic access to species divergence times and timelines through an application programming interface, which is accessible at timetree.temple.edu/api. TToL5 is publicly available at timetree.org.
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Affiliation(s)
- Sudhir Kumar
- Department of Biology, Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA
- Department of Biology, Temple University, Philadelphia, PA 19122, USA
- Center for Biodiversity, Temple University, Philadelphia, PA 19122, USA
- Center for Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah 22254, Saudi Arabia
| | - Michael Suleski
- Department of Biology, Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA
| | - Jack M Craig
- Department of Biology, Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA
- Department of Biology, Temple University, Philadelphia, PA 19122, USA
- Center for Biodiversity, Temple University, Philadelphia, PA 19122, USA
| | - Adrienne E Kasprowicz
- Department of Biology, Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA
- Department of Biology, Temple University, Philadelphia, PA 19122, USA
- Center for Biodiversity, Temple University, Philadelphia, PA 19122, USA
| | - Maxwell Sanderford
- Department of Biology, Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA
| | - Michael Li
- Department of Biology, Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA
| | - Glen Stecher
- Department of Biology, Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA
| | - S Blair Hedges
- Department of Biology, Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA
- Department of Biology, Temple University, Philadelphia, PA 19122, USA
- Center for Biodiversity, Temple University, Philadelphia, PA 19122, USA
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